MS013426 (gene) Bitter gourd (TR) v1

Overview
NameMS013426
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionKxDL domain-containing protein
Locationscaffold402: 1440852 .. 1440956 (+)
RNA-Seq ExpressionMS013426
SyntenyMS013426
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAGGAGCATGAAATCAAGAATTTTGGCTACTTACCCTGATGCATTTCCAGATGAGTCAACGAGTGAAGCTCTTGACAGGAGACCAGACCTTGAAATGCCTCAG

mRNA sequence

GTCAGGAGCATGAAATCAAGAATTTTGGCTACTTACCCTGATGCATTTCCAGATGAGTCAACGAGTGAAGCTCTTGACAGGAGACCAGACCTTGAAATGCCTCAG

Coding sequence (CDS)

GTCAGGAGCATGAAATCAAGAATTTTGGCTACTTACCCTGATGCATTTCCAGATGAGTCAACGAGTGAAGCTCTTGACAGGAGACCAGACCTTGAAATGCCTCAG

Protein sequence

VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ
Homology
BLAST of MS013426 vs. NCBI nr
Match: XP_023541035.1 (kxDL motif-containing protein 1 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023541036.1 kxDL motif-containing protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 4.3e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RSMKSRILATYPDAFPDESTSEALDRRPDLE PQ
Sbjct: 90  IRSMKSRILATYPDAFPDESTSEALDRRPDLERPQ 124

BLAST of MS013426 vs. NCBI nr
Match: XP_022994923.1 (kxDL motif-containing protein 1 [Cucurbita maxima])

HSP 1 Score: 70.1 bits (170), Expect = 4.3e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RSMKSRILATYPDAFPDESTSEALDRRPDLE PQ
Sbjct: 90  IRSMKSRILATYPDAFPDESTSEALDRRPDLERPQ 124

BLAST of MS013426 vs. NCBI nr
Match: XP_022954848.1 (kxDL motif-containing protein 1 [Cucurbita moschata] >KAG6573400.1 KxDL motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012563.1 KxDL motif-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.1 bits (170), Expect = 4.3e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RSMKSRILATYPDAFPDESTSEALDRRPDLE PQ
Sbjct: 90  IRSMKSRILATYPDAFPDESTSEALDRRPDLERPQ 124

BLAST of MS013426 vs. NCBI nr
Match: XP_008460924.1 (PREDICTED: kxDL motif-containing protein 1 [Cucumis melo] >XP_008460925.1 PREDICTED: kxDL motif-containing protein 1 [Cucumis melo] >KAA0045516.1 kxDL motif-containing protein 1 [Cucumis melo var. makuwa] >TYK02105.1 kxDL motif-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 7.4e-09
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RSMKSRILATYPDAFPDESTSEALDRRPDLE+P+
Sbjct: 90  IRSMKSRILATYPDAFPDESTSEALDRRPDLEIPR 124

BLAST of MS013426 vs. NCBI nr
Match: XP_004150678.1 (kxDL motif-containing protein 1 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RSMKS+ILATYPDAFPDESTSEALDRRPDLE+P+
Sbjct: 90  IRSMKSKILATYPDAFPDESTSEALDRRPDLEIPR 124

BLAST of MS013426 vs. ExPASy TrEMBL
Match: A0A6J1K6F6 (kxDL motif-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111490503 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RSMKSRILATYPDAFPDESTSEALDRRPDLE PQ
Sbjct: 90  IRSMKSRILATYPDAFPDESTSEALDRRPDLERPQ 124

BLAST of MS013426 vs. ExPASy TrEMBL
Match: A0A6J1GS89 (kxDL motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111456987 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RSMKSRILATYPDAFPDESTSEALDRRPDLE PQ
Sbjct: 90  IRSMKSRILATYPDAFPDESTSEALDRRPDLERPQ 124

BLAST of MS013426 vs. ExPASy TrEMBL
Match: A0A1S3CER9 (kxDL motif-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103499662 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-09
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RSMKSRILATYPDAFPDESTSEALDRRPDLE+P+
Sbjct: 90  IRSMKSRILATYPDAFPDESTSEALDRRPDLEIPR 124

BLAST of MS013426 vs. ExPASy TrEMBL
Match: A0A5A7TTR7 (KxDL motif-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00930 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-09
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RSMKSRILATYPDAFPDESTSEALDRRPDLE+P+
Sbjct: 90  IRSMKSRILATYPDAFPDESTSEALDRRPDLEIPR 124

BLAST of MS013426 vs. ExPASy TrEMBL
Match: A0A0A0LK01 (KxDL domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G299930 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-09
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RSMKS+ILATYPDAFPDESTSEALDRRPDLE+P+
Sbjct: 90  IRSMKSKILATYPDAFPDESTSEALDRRPDLEIPR 124

BLAST of MS013426 vs. TAIR 10
Match: AT3G29130.1 (CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371); Has 135 Blast hits to 135 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-11
Identity = 28/35 (80.00%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RS+KS+ILATYPDAFPD+STS+A DRRPDLE+PQ
Sbjct: 85  LRSIKSKILATYPDAFPDDSTSDAFDRRPDLELPQ 119

BLAST of MS013426 vs. TAIR 10
Match: AT3G29130.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371). )

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-11
Identity = 28/35 (80.00%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 1   VRSMKSRILATYPDAFPDESTSEALDRRPDLEMPQ 36
           +RS+KS+ILATYPDAFPD+STS+A DRRPDLE+PQ
Sbjct: 134 LRSIKSKILATYPDAFPDDSTSDAFDRRPDLELPQ 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023541035.14.3e-0994.29kxDL motif-containing protein 1 isoform X2 [Cucurbita pepo subsp. pepo] >XP_0235... [more]
XP_022994923.14.3e-0994.29kxDL motif-containing protein 1 [Cucurbita maxima][more]
XP_022954848.14.3e-0994.29kxDL motif-containing protein 1 [Cucurbita moschata] >KAG6573400.1 KxDL motif-co... [more]
XP_008460924.17.4e-0991.43PREDICTED: kxDL motif-containing protein 1 [Cucumis melo] >XP_008460925.1 PREDIC... [more]
XP_004150678.11.6e-0888.57kxDL motif-containing protein 1 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1K6F62.1e-0994.29kxDL motif-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111490503 PE=3... [more]
A0A6J1GS892.1e-0994.29kxDL motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111456987 PE... [more]
A0A1S3CER93.6e-0991.43kxDL motif-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103499662 PE=3 SV=... [more]
A0A5A7TTR73.6e-0991.43KxDL motif-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A0A0LK018.0e-0988.57KxDL domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G299930 PE=3 S... [more]
Match NameE-valueIdentityDescription
AT3G29130.12.9e-1180.00CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371)... [more]
AT3G29130.22.9e-1180.00FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013426.1MS013426.1mRNA