MS013425 (gene) Bitter gourd (TR) v1

Overview


Name	MS013425
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	KxDL domain-containing protein
Location	scaffold402: 1439771 .. 1440219 (+)
RNA-Seq Expression	MS013425
Synteny	MS013425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGCGGGCGGAGGAGGAGTCGATAAGAGCAGCCTCGGAGGAGCTCTCTCGTGAGTTCAAAACTTTGATGAGCACTGATGATTTGAGTTCTCTCAATCATTTGCAGCACCTCATGTAAGCTCTCTTTCTCTCTGCGTTGCGTATTTGAGAACAAATTTGACGGATTATGATCCAAATTGAGCCTCTTAACCGACTTGATCGTCGTAGTATTTGGTATTTCTTTTGATAATTTGAAGAATGTTCAAGTGTTGTGATTACTATGAATCATTTGTTTGAGTCGTTTATTGCAGATTGGGGAGATTGCAGGATAGCAACGCAGTCCTCTCTCATTTTAACGAGTTTTCGGAGCATTGCTTTGCTGAGGTGTCTGGAGATCTATCTAGAAATACTCGTCTTTTAAAGTCTATGAAATCTGACCTTGATTACATATTTCAGAAAATTAGG

mRNA sequence

ATGGAGCAGCGGGCGGAGGAGGAGTCGATAAGAGCAGCCTCGGAGGAGCTCTCTCGTGAGTTCAAAACTTTGATGAGCACTGATGATTTGAGTTCTCTCAATCATTTGCAGCACCTCATATTGGGGAGATTGCAGGATAGCAACGCAGTCCTCTCTCATTTTAACGAGTTTTCGGAGCATTGCTTTGCTGAGGTGTCTGGAGATCTATCTAGAAATACTCGTCTTTTAAAGTCTATGAAATCTGACCTTGATTACATATTTCAGAAAATTAGG

Coding sequence (CDS)

ATGGAGCAGCGGGCGGAGGAGGAGTCGATAAGAGCAGCCTCGGAGGAGCTCTCTCGTGAGTTCAAAACTTTGATGAGCACTGATGATTTGAGTTCTCTCAATCATTTGCAGCACCTCATATTGGGGAGATTGCAGGATAGCAACGCAGTCCTCTCTCATTTTAACGAGTTTTCGGAGCATTGCTTTGCTGAGGTGTCTGGAGATCTATCTAGAAATACTCGTCTTTTAAAGTCTATGAAATCTGACCTTGATTACATATTTCAGAAAATTAGG

Protein sequence

MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEHCFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR

Homology

[Close]

BLAST of MS013425 vs. NCBI nr
Match: XP_004150678.1 (kxDL motif-containing protein 1 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 5.7e-37
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60
          MEQRAE ESIR ASEELS+EFKTLM+TDDL+SLNHLQHLILGRLQDSNAVLSHFNEFSEH
Sbjct: 1  MEQRAEGESIRVASEELSQEFKTLMNTDDLNSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60

Query: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR 92
          CFAEVSGDLSRNTRLL SMKSDLDYIFQKIR
Sbjct: 61 CFAEVSGDLSRNTRLLNSMKSDLDYIFQKIR 91

[Close]

BLAST of MS013425 vs. NCBI nr
Match: KAE8651972.1 (hypothetical protein Csa_006049 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 5.7e-37
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60
          MEQRAE ESIR ASEELS+EFKTLM+TDDL+SLNHLQHLILGRLQDSNAVLSHFNEFSEH
Sbjct: 1  MEQRAEGESIRVASEELSQEFKTLMNTDDLNSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60

Query: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR 92
          CFAEVSGDLSRNTRLL SMKSDLDYIFQKIR
Sbjct: 61 CFAEVSGDLSRNTRLLNSMKSDLDYIFQKIR 91

[Close]

BLAST of MS013425 vs. NCBI nr
Match: XP_022954848.1 (kxDL motif-containing protein 1 [Cucurbita moschata] >KAG6573400.1 KxDL motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012563.1 KxDL motif-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60
          MEQRAE ESIR ASEELSREFKTL+ TDDL+SLNHLQHLILGRLQDSNAVLSHFNEFSEH
Sbjct: 1  MEQRAEGESIRVASEELSREFKTLIKTDDLNSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60

Query: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR 92
          CFAEVSGDLSRNTRLLKSMKSDLDYIF KIR
Sbjct: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFLKIR 91

[Close]

BLAST of MS013425 vs. NCBI nr
Match: XP_022994923.1 (kxDL motif-containing protein 1 [Cucurbita maxima])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60
          MEQRAE ESIR ASEELS+EFKTL+ TDDL+SLNHLQHLILGRLQDSNAVLSHFNEFSEH
Sbjct: 1  MEQRAEGESIRVASEELSQEFKTLIKTDDLNSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60

Query: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR 92
          CFAEVSGDLSRNTRLLKSMKSDLDYIF KIR
Sbjct: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFLKIR 91

[Close]

BLAST of MS013425 vs. NCBI nr
Match: XP_038902517.1 (kxDL motif-containing protein 1 [Benincasa hispida] >XP_038902518.1 kxDL motif-containing protein 1 [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 6.3e-36
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60
          MEQRAE ESIR ASEELS+EFKTLM+ DDL+SLNHLQHLILGRLQDSNAVLSHFNEFSEH
Sbjct: 1  MEQRAEGESIRIASEELSQEFKTLMNNDDLNSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60

Query: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR 92
          C+AEVSGDLSRNTRLL SMKSDLDYIFQKIR
Sbjct: 61 CYAEVSGDLSRNTRLLNSMKSDLDYIFQKIR 91

[Close]

BLAST of MS013425 vs. ExPASy Swiss-Prot
Match: Q9VTY4 (KxDL motif-containing protein CG10681 OS=Drosophila melanogaster OX=7227 GN=CG10681 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 25/80 (31.25%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 12  AASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEHCFAEVSGDLSR 71
           +A+E   +    +++  D+ ++   Q  +L R + +N +L + N  S+      S D  R
Sbjct: 28  SAAEAFIQSLAGMVNQGDVETMIRAQKQMLQRFEKTNEMLLNCNALSQSRLKSASEDFKR 87

Query: 72  NTRLLKSMKSDLDYIFQKIR 92
           + + L  MK DLDYIF+KIR
Sbjct: 88  HVKCLSEMKKDLDYIFRKIR 107

[Close]

BLAST of MS013425 vs. ExPASy TrEMBL
Match: A0A0A0LK01 (KxDL domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G299930 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60
          MEQRAE ESIR ASEELS+EFKTLM+TDDL+SLNHLQHLILGRLQDSNAVLSHFNEFSEH
Sbjct: 1  MEQRAEGESIRVASEELSQEFKTLMNTDDLNSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60

Query: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR 92
          CFAEVSGDLSRNTRLL SMKSDLDYIFQKIR
Sbjct: 61 CFAEVSGDLSRNTRLLNSMKSDLDYIFQKIR 91

[Close]

BLAST of MS013425 vs. ExPASy TrEMBL
Match: A0A6J1GS89 (kxDL motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111456987 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.2e-37
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60
          MEQRAE ESIR ASEELSREFKTL+ TDDL+SLNHLQHLILGRLQDSNAVLSHFNEFSEH
Sbjct: 1  MEQRAEGESIRVASEELSREFKTLIKTDDLNSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60

Query: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR 92
          CFAEVSGDLSRNTRLLKSMKSDLDYIF KIR
Sbjct: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFLKIR 91

[Close]

BLAST of MS013425 vs. ExPASy TrEMBL
Match: A0A6J1K6F6 (kxDL motif-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111490503 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60
          MEQRAE ESIR ASEELS+EFKTL+ TDDL+SLNHLQHLILGRLQDSNAVLSHFNEFSEH
Sbjct: 1  MEQRAEGESIRVASEELSQEFKTLIKTDDLNSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60

Query: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR 92
          CFAEVSGDLSRNTRLLKSMKSDLDYIF KIR
Sbjct: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFLKIR 91

[Close]

BLAST of MS013425 vs. ExPASy TrEMBL
Match: A0A1S3CER9 (kxDL motif-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103499662 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.2e-36
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60
          MEQRAE ESIR ASEELS+EFKTLM+ DDL+SLNHLQHLILGRLQDSNAVLSHFNEFSEH
Sbjct: 1  MEQRAEGESIRVASEELSQEFKTLMNNDDLNSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60

Query: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR 92
          CFA VSGDLSRNTRLL SMKSDLDYIFQKIR
Sbjct: 61 CFAAVSGDLSRNTRLLNSMKSDLDYIFQKIR 91

[Close]

BLAST of MS013425 vs. ExPASy TrEMBL
Match: A0A5A7TTR7 (KxDL motif-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00930 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.2e-36
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MEQRAEEESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60
          MEQRAE ESIR ASEELS+EFKTLM+ DDL+SLNHLQHLILGRLQDSNAVLSHFNEFSEH
Sbjct: 1  MEQRAEGESIRVASEELSQEFKTLMNNDDLNSLNHLQHLILGRLQDSNAVLSHFNEFSEH 60

Query: 61 CFAEVSGDLSRNTRLLKSMKSDLDYIFQKIR 92
          CFA VSGDLSRNTRLL SMKSDLDYIFQKIR
Sbjct: 61 CFAAVSGDLSRNTRLLNSMKSDLDYIFQKIR 91

[Close]

BLAST of MS013425 vs. TAIR 10
Match: AT3G29130.1 (CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371); Has 135 Blast hits to 135 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 127.1 bits (318), Expect = 7.2e-30
Identity = 62/85 (72.94%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 7  EESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEHCFAEVS 66
          EE+IRAAS+E+S EFKTL+  +DL+SL HLQHLILGRLQDSNAVLSH+NEF+E+CF++VS
Sbjct: 2  EETIRAASQEVSNEFKTLVKVEDLNSLRHLQHLILGRLQDSNAVLSHYNEFAENCFSDVS 61

Query: 67 GDLSRNTRLLKSMKSDLDYIFQKIR 92
           + +R+TRLLKSMK+DLDYIF K+R
Sbjct: 62 LEFARSTRLLKSMKADLDYIFLKLR 86

[Close]

BLAST of MS013425 vs. TAIR 10
Match: AT3G29130.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371). )

HSP 1 Score: 127.1 bits (318), Expect = 7.2e-30
Identity = 62/85 (72.94%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 7   EESIRAASEELSREFKTLMSTDDLSSLNHLQHLILGRLQDSNAVLSHFNEFSEHCFAEVS 66
           EE+IRAAS+E+S EFKTL+  +DL+SL HLQHLILGRLQDSNAVLSH+NEF+E+CF++VS
Sbjct: 51  EETIRAASQEVSNEFKTLVKVEDLNSLRHLQHLILGRLQDSNAVLSHYNEFAENCFSDVS 110

Query: 67  GDLSRNTRLLKSMKSDLDYIFQKIR 92
            + +R+TRLLKSMK+DLDYIF K+R
Sbjct: 111 LEFARSTRLLKSMKADLDYIFLKLR 135

The following BLAST results are available for this feature:

BLAST of MS013425 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150678.1	5.7e-37	93.41	kxDL motif-containing protein 1 [Cucumis sativus]	[more]
KAE8651972.1	5.7e-37	93.41	hypothetical protein Csa_006049 [Cucumis sativus]	[more]
XP_022954848.1	1.3e-36	93.41	kxDL motif-containing protein 1 [Cucurbita moschata] >KAG6573400.1 KxDL motif-co...	[more]
XP_022994923.1	3.7e-36	92.31	kxDL motif-containing protein 1 [Cucurbita maxima]	[more]
XP_038902517.1	6.3e-36	91.21	kxDL motif-containing protein 1 [Benincasa hispida] >XP_038902518.1 kxDL motif-c...	[more]

BLAST of MS013425 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VTY4	1.3e-04	31.25	KxDL motif-containing protein CG10681 OS=Drosophila melanogaster OX=7227 GN=CG10...	[more]

BLAST of MS013425 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK01	2.8e-37	93.41	KxDL domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G299930 PE=3 S...	[more]
A0A6J1GS89	6.2e-37	93.41	kxDL motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111456987 PE...	[more]
A0A6J1K6F6	1.8e-36	92.31	kxDL motif-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111490503 PE=3...	[more]
A0A1S3CER9	5.2e-36	91.21	kxDL motif-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103499662 PE=3 SV=...	[more]
A0A5A7TTR7	5.2e-36	91.21	KxDL motif-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MS013425 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29130.1	7.2e-30	72.94	CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371)...	[more]
AT3G29130.2	7.2e-30	72.94	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019371	Uncharacterised domain KxDL	PFAM	PF10241	KxDL	coord: 21..91 e-value: 2.1E-18 score: 66.4
IPR039843	KxDL motif-containing protein 1-like	PANTHER	PTHR13511	UNCHARACTERIZED	coord: 4..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013425.1	MS013425.1	mRNA