MS013403 (gene) Bitter gourd (TR) v1

Overview


Name	MS013403
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	F-box protein
Location	scaffold402: 1091684 .. 1091886 (+)
RNA-Seq Expression	MS013403
Synteny	MS013403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTCTCTCTGAAGGTGATCTATTGCATCATTTCCTCCTGGCCAAAACTCTTTATCCTCGCTTTCTTCAAGTTCCTCGTCAAATCCTTATTCGATTTGATTTCCCCAATTCTGTCCAATCCAAATCCCATAACTCCCCTGCACAGATCCAACACCTGCAAAATGAGTTTCCGACTGCAGATCTTCAGGTCGAGAGGGTCGTG

mRNA sequence

TCCCTCTCTCTGAAGGTGATCTATTGCATCATTTCCTCCTGGCCAAAACTCTTTATCCTCGCTTTCTTCAAGTTCCTCGTCAAATCCTTATTCGATTTGATTTCCCCAATTCTGCAATCCAAATCCCATAACTCCCCTGCACAGATCCAACACCTGCAAAATGAGTTTCCGACTGCAGATCTTCAGGTCGAGAGGGTCGTG

Coding sequence (CDS)

TCCCTCTCTCTGAAGGTGATCTATTGCATCATTTCCTCCTGGCCAAAACTCTTTATCCTCGCTTTCTTCAAGTTCCTCGTCAAATCCTTATTCGATTTGATTTCCCCAATTCTGCAATCCAAATCCCATAACTCCCCTGCACAGATCCAACACCTGCAAAATGAGTTTCCGACTGCAGATCTTCAGGTCGAGAGGGTCGTG

Protein sequence

SLSLKVIYCIISSWPKLFILAFFKFLVKSLFDLISPILQSKSHNSPAQIQHLQNEFPTADLQVERVV

Homology

[Close]

BLAST of MS013403 vs. NCBI nr
Match: XP_004150662.2 (F-box protein At1g22220 isoform X1 [Cucumis sativus] >KAE8652925.1 hypothetical protein Csa_017755 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 47/81 (58.02%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1   SLSLKVIYCIIS------SWPKLFILAFFKFLVKSLFDLISPI-LQSKSHNSPAQ----- 60
           SLSLKV  C+IS      S    F+L+FFK ++KS  DL+SPI LQS+S NSPAQ     
Sbjct: 72  SLSLKV-DCVISSDSDSDSHQNSFLLSFFKSVLKSFLDLLSPILLQSESQNSPAQILRQF 131

Query: 61  --IQHLQNEFPTADLQVERVV 68
             IQHLQ EFPT DL+VERVV
Sbjct: 132 RRIQHLQIEFPTTDLKVERVV 151

[Close]

BLAST of MS013403 vs. NCBI nr
Match: XP_031737839.1 (F-box protein At1g22220 isoform X2 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 47/81 (58.02%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1   SLSLKVIYCIIS------SWPKLFILAFFKFLVKSLFDLISPI-LQSKSHNSPAQ----- 60
           SLSLKV  C+IS      S    F+L+FFK ++KS  DL+SPI LQS+S NSPAQ     
Sbjct: 72  SLSLKV-DCVISSDSDSDSHQNSFLLSFFKSVLKSFLDLLSPILLQSESQNSPAQILRQF 131

Query: 61  --IQHLQNEFPTADLQVERVV 68
             IQHLQ EFPT DL+VERVV
Sbjct: 132 RRIQHLQIEFPTTDLKVERVV 151

[Close]

BLAST of MS013403 vs. NCBI nr
Match: XP_008445343.1 (PREDICTED: F-box protein At1g22220 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1   SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA---- 60
           SLSL  + C+IS        S    F+L+FFK +VKS  DL+SPIL QS++ NSPA    
Sbjct: 68  SLSL-TVDCVISSDSDSDSDSDQNSFLLSFFKSVVKSFLDLLSPILVQSETQNSPAQILR 127

Query: 61  ---QIQHLQNEFPTADLQVERVV 68
              QIQHLQ EFPT DL+VERVV
Sbjct: 128 QFLQIQHLQIEFPTTDLKVERVV 149

[Close]

BLAST of MS013403 vs. NCBI nr
Match: KAA0064831.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1   SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA---- 60
           SLSL  + C+IS        S    F+L+FFK +VKS  DL+SPIL QS++ NSPA    
Sbjct: 50  SLSL-TVDCVISSDSDSDSDSDQNSFLLSFFKSVVKSFLDLLSPILVQSETQNSPAQILR 109

Query: 61  ---QIQHLQNEFPTADLQVERVV 68
              QIQHLQ EFPT DL+VERVV
Sbjct: 110 QFLQIQHLQIEFPTTDLKVERVV 131

[Close]

BLAST of MS013403 vs. NCBI nr
Match: XP_023002829.1 (F-box protein At1g78100-like [Cucurbita maxima])

HSP 1 Score: 60.1 bits (144), Expect = 8.6e-06
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1   SLSLKVIYCIIS----SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPAQ------- 60
           SL LKV  C+IS    S    F+  FFK +VKS FDLISPIL QS+S NSPAQ       
Sbjct: 56  SLFLKV-DCVISSDSDSDENSFLYGFFKSVVKSFFDLISPILVQSESQNSPAQILRQFIR 115

Query: 61  IQHLQNEFPTADLQVERV 67
           IQ L+ EFPT DL+VER+
Sbjct: 116 IQRLEIEFPTGDLKVERI 132

[Close]

BLAST of MS013403 vs. ExPASy TrEMBL
Match: A0A0A0LN04 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G307320 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.8e-08
Identity = 47/81 (58.02%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1   SLSLKVIYCIIS------SWPKLFILAFFKFLVKSLFDLISPI-LQSKSHNSPAQ----- 60
           SLSLKV  C+IS      S    F+L+FFK ++KS  DL+SPI LQS+S NSPAQ     
Sbjct: 72  SLSLKV-DCVISSDSDSDSHQNSFLLSFFKSVLKSFLDLLSPILLQSESQNSPAQILRQF 131

Query: 61  --IQHLQNEFPTADLQVERVV 68
             IQHLQ EFPT DL+VERVV
Sbjct: 132 RRIQHLQIEFPTTDLKVERVV 151

[Close]

BLAST of MS013403 vs. ExPASy TrEMBL
Match: A0A5A7VGI7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001430 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1   SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA---- 60
           SLSL  + C+IS        S    F+L+FFK +VKS  DL+SPIL QS++ NSPA    
Sbjct: 50  SLSL-TVDCVISSDSDSDSDSDQNSFLLSFFKSVVKSFLDLLSPILVQSETQNSPAQILR 109

Query: 61  ---QIQHLQNEFPTADLQVERVV 68
              QIQHLQ EFPT DL+VERVV
Sbjct: 110 QFLQIQHLQIEFPTTDLKVERVV 131

[Close]

BLAST of MS013403 vs. ExPASy TrEMBL
Match: A0A1S3BC00 (F-box protein At1g22220 OS=Cucumis melo OX=3656 GN=LOC103488404 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1   SLSLKVIYCIIS--------SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPA---- 60
           SLSL  + C+IS        S    F+L+FFK +VKS  DL+SPIL QS++ NSPA    
Sbjct: 68  SLSL-TVDCVISSDSDSDSDSDQNSFLLSFFKSVVKSFLDLLSPILVQSETQNSPAQILR 127

Query: 61  ---QIQHLQNEFPTADLQVERVV 68
              QIQHLQ EFPT DL+VERVV
Sbjct: 128 QFLQIQHLQIEFPTTDLKVERVV 149

[Close]

BLAST of MS013403 vs. ExPASy TrEMBL
Match: A0A6J1KRK0 (F-box protein At1g78100-like OS=Cucurbita maxima OX=3661 GN=LOC111496576 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.1e-06
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1   SLSLKVIYCIIS----SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPAQ------- 60
           SL LKV  C+IS    S    F+  FFK +VKS FDLISPIL QS+S NSPAQ       
Sbjct: 56  SLFLKV-DCVISSDSDSDENSFLYGFFKSVVKSFFDLISPILVQSESQNSPAQILRQFIR 115

Query: 61  IQHLQNEFPTADLQVERV 67
           IQ L+ EFPT DL+VER+
Sbjct: 116 IQRLEIEFPTGDLKVERI 132

[Close]

BLAST of MS013403 vs. ExPASy TrEMBL
Match: A0A6J1GI01 (F-box protein At1g22220-like OS=Cucurbita moschata OX=3662 GN=LOC111454360 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.1e-06
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1   SLSLKVIYCIIS----SWPKLFILAFFKFLVKSLFDLISPIL-QSKSHNSPAQ------- 60
           SL LKV  C+IS    S    F+  FFK +VKS FDLISPIL QS+S NSPAQ       
Sbjct: 56  SLFLKV-DCVISSDSDSDENSFLYGFFKSVVKSFFDLISPILVQSESQNSPAQILRQFIR 115

Query: 61  IQHLQNEFPTADLQVERV 67
           IQ L+ EFPT DL+VER+
Sbjct: 116 IQRLEIEFPTGDLKVERI 132

The following BLAST results are available for this feature:

BLAST of MS013403 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150662.2	1.2e-07	58.02	F-box protein At1g22220 isoform X1 [Cucumis sativus] >KAE8652925.1 hypothetical ...	[more]
XP_031737839.1	1.2e-07	58.02	F-box protein At1g22220 isoform X2 [Cucumis sativus]	[more]
XP_008445343.1	2.9e-06	54.22	PREDICTED: F-box protein At1g22220 [Cucumis melo]	[more]
KAA0064831.1	2.9e-06	54.22	F-box protein [Cucumis melo var. makuwa]	[more]
XP_023002829.1	8.6e-06	56.41	F-box protein At1g78100-like [Cucurbita maxima]	[more]

BLAST of MS013403 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN04	5.8e-08	58.02	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G307320 PE=4 ...	[more]
A0A5A7VGI7	1.4e-06	54.22	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001430 ...	[more]
A0A1S3BC00	1.4e-06	54.22	F-box protein At1g22220 OS=Cucumis melo OX=3656 GN=LOC103488404 PE=4 SV=1	[more]
A0A6J1KRK0	4.1e-06	56.41	F-box protein At1g78100-like OS=Cucurbita maxima OX=3661 GN=LOC111496576 PE=4 SV...	[more]
A0A6J1GI01	4.1e-06	56.41	F-box protein At1g22220-like OS=Cucurbita moschata OX=3662 GN=LOC111454360 PE=4 ...	[more]

BLAST of MS013403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013403.1	MS013403.1	mRNA