MS013261 (gene) Bitter gourd (TR) v1

Overview


Name	MS013261
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein-like protein
Location	scaffold459: 1655069 .. 1655512 (-)
RNA-Seq Expression	MS013261
Synteny	MS013261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAATCACCACCACTCCCAAATTCTCTCCCCCAAGCCAACAGCACTGCAACCCCCATGAGTTCTTCAGGAACCCAGAGGAGGAAGCTTCCTACTCCACAGGAACTCGTATCCCACTACGAATCCCAAGGCCTTAATTCTCATGATGCTTCAATCAAGGTAATAGAGGACCTTCAGAATGCTCTCTTCAGGATCGTCTCCTCCGGCAGAGGCAAAAAGGACAAGCTTCTGGTCGAGACCTCGAAAAAGATCGATGCCACTATTAGCCGTGTTGCCATTCTGGACCTCAAGTTGGACTCGAAGCCGGGCTACGCCGAGACTTTTGCTATAGGATTGGCTTCTGGGTCTGTTTTGAAAGGGGTTGGGAGTGTGATGCCGCATGTTTTTGGGGCTCTCGCCAATATTTGGAGCTCTGTCAGTAATGCTACGAAGCATTCTTCT

mRNA sequence

ATGGGGGAATCACCACCACTCCCAAATTCTCTCCCCCAAGCCAACAGCACTGCAACCCCCATGAGTTCTTCAGGAACCCAGAGGAGGAAGCTTCCTACTCCACAGGAACTCGTATCCCACTACGAATCCCAAGGCCTTAATTCTCATGATGCTTCAATCAAGGTAATAGAGGACCTTCAGAATGCTCTCTTCAGGATCGTCTCCTCCGGCAGAGGCAAAAAGGACAAGCTTCTGGTCGAGACCTCGAAAAAGATCGATGCCACTATTAGCCGTGTTGCCATTCTGGACCTCAAGTTGGACTCGAAGCCGGGCTACGCCGAGACTTTTGCTATAGGATTGGCTTCTGGGTCTGTTTTGAAAGGGGTTGGGAGTGTGATGCCGCATGTTTTTGGGGCTCTCGCCAATATTTGGAGCTCTGTCAGTAATGCTACGAAGCATTCTTCT

Coding sequence (CDS)

ATGGGGGAATCACCACCACTCCCAAATTCTCTCCCCCAAGCCAACAGCACTGCAACCCCCATGAGTTCTTCAGGAACCCAGAGGAGGAAGCTTCCTACTCCACAGGAACTCGTATCCCACTACGAATCCCAAGGCCTTAATTCTCATGATGCTTCAATCAAGGTAATAGAGGACCTTCAGAATGCTCTCTTCAGGATCGTCTCCTCCGGCAGAGGCAAAAAGGACAAGCTTCTGGTCGAGACCTCGAAAAAGATCGATGCCACTATTAGCCGTGTTGCCATTCTGGACCTCAAGTTGGACTCGAAGCCGGGCTACGCCGAGACTTTTGCTATAGGATTGGCTTCTGGGTCTGTTTTGAAAGGGGTTGGGAGTGTGATGCCGCATGTTTTTGGGGCTCTCGCCAATATTTGGAGCTCTGTCAGTAATGCTACGAAGCATTCTTCT

Protein sequence

MGESPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQNALFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLKGVGSVMPHVFGALANIWSSVSNATKHSS

Homology

[Close]

BLAST of MS013261 vs. NCBI nr
Match: XP_022148109.1 (uncharacterized protein LOC111016865 [Momordica charantia])

HSP 1 Score: 281.6 bits (719), Expect = 4.0e-72
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MGESPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQ 60
           MGESPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQ
Sbjct: 1   MGESPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQ 60

Query: 61  NALFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLK 120
           NALFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLK
Sbjct: 61  NALFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLK 120

Query: 121 GVGSVMPHVFGALANIWSSVSNATKHSS 149
           GVGSVMPHVFGALANIWSSVSNATKHSS
Sbjct: 121 GVGSVMPHVFGALANIWSSVSNATKHSS 148

[Close]

BLAST of MS013261 vs. NCBI nr
Match: XP_038893730.1 (uncharacterized protein LOC120082569 [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 5.1e-59
Identity = 125/150 (83.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MGE--SPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIED 60
           MGE  S   PNSLPQ NSTA PM+SSGT+RRK P+PQEL+SHYESQGL SHDASIKVIED
Sbjct: 1   MGESHSSAPPNSLPQDNSTANPMTSSGTRRRKPPSPQELISHYESQGLTSHDASIKVIED 60

Query: 61  LQNALFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSV 120
           LQNALFRI+SSGRGKKDKLLVETS+KIDAT +R+AILDLKLDSKPGYAE+FA+GLASGSV
Sbjct: 61  LQNALFRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAESFALGLASGSV 120

Query: 121 LKGVGSVMPHVFGALANIWSSVSNATKHSS 149
           L G+G+VMPHVFGAL NIWSSVSN TKHSS
Sbjct: 121 LSGIGTVMPHVFGALTNIWSSVSNLTKHSS 150

[Close]

BLAST of MS013261 vs. NCBI nr
Match: XP_022980748.1 (uncharacterized protein LOC111480022 [Cucurbita maxima])

HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 122/145 (84.14%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 4   SPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQNAL 63
           SP   NSLPQ N+TATPM+SSG QRRKLP+PQELVSHYESQGL SHDASIKVIEDLQNAL
Sbjct: 6   SPATQNSLPQDNNTATPMASSGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNAL 65

Query: 64  FRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLKGVG 123
            RI+SSGRGKKDKLLV+TS+KIDAT +R+AILDLKLDSKPGYA+TFA+GLASGSVL G+G
Sbjct: 66  VRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIG 125

Query: 124 SVMPHVFGALANIWSSVSNATKHSS 149
           +VMPHVFGALANIWSSVS  TKHSS
Sbjct: 126 AVMPHVFGALANIWSSVSKFTKHSS 150

[Close]

BLAST of MS013261 vs. NCBI nr
Match: XP_022955496.1 (uncharacterized protein LOC111457504 [Cucurbita moschata])

HSP 1 Score: 231.1 bits (588), Expect = 6.2e-57
Identity = 121/146 (82.88%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 4   SPPLPNSLPQANSTATPMSSS-GTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQNA 63
           SP   NSLPQ N+TATPM+SS G QRRKLP+PQELVSHYESQGL SHDASIKVIEDLQNA
Sbjct: 6   SPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNA 65

Query: 64  LFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLKGV 123
           L RI+SSGRGKKDKLLV+TS+KIDAT +R+AILDLKLDSKPGYA+TFA+GLASGSVL G+
Sbjct: 66  LVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGI 125

Query: 124 GSVMPHVFGALANIWSSVSNATKHSS 149
           G+VMPHVFGA+ANIWSSVS  TKHSS
Sbjct: 126 GAVMPHVFGAIANIWSSVSKFTKHSS 151

[Close]

BLAST of MS013261 vs. NCBI nr
Match: XP_023527033.1 (uncharacterized protein LOC111790380 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 4.0e-56
Identity = 121/146 (82.88%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 4   SPPLPNSLPQANSTATPMSSS-GTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQNA 63
           SP   NSL Q N+TATPM+SS G QRRKLP+PQELVSHYESQGL SHDASIKVIEDLQNA
Sbjct: 6   SPATQNSLHQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNA 65

Query: 64  LFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLKGV 123
           L RI+SSGRGKKDKLLV+TS+KIDAT +R+AILDLKLDSKPGYA+TFA+GLASGSVL G+
Sbjct: 66  LVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGI 125

Query: 124 GSVMPHVFGALANIWSSVSNATKHSS 149
           G+VMPHVFGALANIWSSVS  TKHSS
Sbjct: 126 GAVMPHVFGALANIWSSVSKFTKHSS 151

[Close]

BLAST of MS013261 vs. ExPASy TrEMBL
Match: A0A6J1D308 (uncharacterized protein LOC111016865 OS=Momordica charantia OX=3673 GN=LOC111016865 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MGESPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQ 60
           MGESPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQ
Sbjct: 1   MGESPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQ 60

Query: 61  NALFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLK 120
           NALFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLK
Sbjct: 61  NALFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLK 120

Query: 121 GVGSVMPHVFGALANIWSSVSNATKHSS 149
           GVGSVMPHVFGALANIWSSVSNATKHSS
Sbjct: 121 GVGSVMPHVFGALANIWSSVSNATKHSS 148

[Close]

BLAST of MS013261 vs. ExPASy TrEMBL
Match: A0A6J1J075 (uncharacterized protein LOC111480022 OS=Cucurbita maxima OX=3661 GN=LOC111480022 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.1e-59
Identity = 122/145 (84.14%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 4   SPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQNAL 63
           SP   NSLPQ N+TATPM+SSG QRRKLP+PQELVSHYESQGL SHDASIKVIEDLQNAL
Sbjct: 6   SPATQNSLPQDNNTATPMASSGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNAL 65

Query: 64  FRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLKGVG 123
            RI+SSGRGKKDKLLV+TS+KIDAT +R+AILDLKLDSKPGYA+TFA+GLASGSVL G+G
Sbjct: 66  VRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGIG 125

Query: 124 SVMPHVFGALANIWSSVSNATKHSS 149
           +VMPHVFGALANIWSSVS  TKHSS
Sbjct: 126 AVMPHVFGALANIWSSVSKFTKHSS 150

[Close]

BLAST of MS013261 vs. ExPASy TrEMBL
Match: A0A6J1GTX5 (uncharacterized protein LOC111457504 OS=Cucurbita moschata OX=3662 GN=LOC111457504 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.0e-57
Identity = 121/146 (82.88%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 4   SPPLPNSLPQANSTATPMSSS-GTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQNA 63
           SP   NSLPQ N+TATPM+SS G QRRKLP+PQELVSHYESQGL SHDASIKVIEDLQNA
Sbjct: 6   SPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIEDLQNA 65

Query: 64  LFRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLKGV 123
           L RI+SSGRGKKDKLLV+TS+KIDAT +R+AILDLKLDSKPGYA+TFA+GLASGSVL G+
Sbjct: 66  LVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSVLNGI 125

Query: 124 GSVMPHVFGALANIWSSVSNATKHSS 149
           G+VMPHVFGA+ANIWSSVS  TKHSS
Sbjct: 126 GAVMPHVFGAIANIWSSVSKFTKHSS 151

[Close]

BLAST of MS013261 vs. ExPASy TrEMBL
Match: A0A5A7VAF7 (Putative ribosomal-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00060 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 111/144 (77.08%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 4   SPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQNAL 63
           SP  PNSLPQA    +P   S   RRK P+PQEL+SHYESQG  SHDASIKVI+DLQNAL
Sbjct: 6   SPAPPNSLPQAQHNISPAVRS---RRKPPSPQELISHYESQGHTSHDASIKVIDDLQNAL 65

Query: 64  FRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLKGVG 123
           F+I+SSGRGKKDKLL+ETS+KIDAT SR+A+LDLKLDSKPGYAETFA+GLASGSVL G+G
Sbjct: 66  FKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNGLG 125

Query: 124 SVMPHVFGALANIWSSVSNATKHS 148
           +VMPHVFGAL NIWSSV+N TKHS
Sbjct: 126 TVMPHVFGALTNIWSSVTNLTKHS 146

[Close]

BLAST of MS013261 vs. ExPASy TrEMBL
Match: A0A1S4DV46 (uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 111/144 (77.08%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 4   SPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQNAL 63
           SP  PNSLPQA    +P   S   RRK P+PQEL+SHYESQG  SHDASIKVI+DLQNAL
Sbjct: 6   SPAPPNSLPQAQHNISPAVRS---RRKPPSPQELISHYESQGHTSHDASIKVIDDLQNAL 65

Query: 64  FRIVSSGRGKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLKGVG 123
           F+I+SSGRGKKDKLL+ETS+KIDAT SR+A+LDLKLDSKPGYAETFA+GLASGSVL G+G
Sbjct: 66  FKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNGLG 125

Query: 124 SVMPHVFGALANIWSSVSNATKHS 148
           +VMPHVFGAL NIWSSV+N TKHS
Sbjct: 126 TVMPHVFGALTNIWSSVTNLTKHS 146

[Close]

BLAST of MS013261 vs. TAIR 10
Match: AT1G16790.1 (ribosomal protein-related )

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-30
Identity = 73/148 (49.32%), Postives = 97/148 (65.54%), Query Frame = 0


Query: 3   ESPPLPNSLPQANSTATPMSSSGTQRRKLPTPQELVSHYESQGLNSHDASIKVIEDLQNA 62
           + P  PN+  +  S     S      +K PTP EL+SHY+ +GL   +ASIKVIEDLQNA
Sbjct: 2   KQPATPNAAEETKSEQKQKS------KKFPTPTELISHYQKRGLEPAEASIKVIEDLQNA 61

Query: 63  LFRIVSSGR--GKKDKLLVETSKKIDATISRVAILDLKLDSKPGYAETFAIGLASGSVLK 122
           L R+VSS R    KDKL+ + ++KIDA   R+A++D KL++KPGY ETFA+GLASG+ L 
Sbjct: 62  LVRVVSSSRNASSKDKLVTD-ARKIDAINGRLAVVDAKLETKPGYVETFALGLASGATLN 121

Query: 123 GVGSVMPHVFGALANIWSSVSNATKHSS 149
           G+ +V PHV   +  IWS+V   T  SS
Sbjct: 122 GISAVWPHVTRGIGQIWSAVRIGTDPSS 142

The following BLAST results are available for this feature:

BLAST of MS013261 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148109.1	4.0e-72	100.00	uncharacterized protein LOC111016865 [Momordica charantia]	[more]
XP_038893730.1	5.1e-59	83.33	uncharacterized protein LOC120082569 [Benincasa hispida]	[more]
XP_022980748.1	1.5e-58	84.14	uncharacterized protein LOC111480022 [Cucurbita maxima]	[more]
XP_022955496.1	6.2e-57	82.88	uncharacterized protein LOC111457504 [Cucurbita moschata]	[more]
XP_023527033.1	4.0e-56	82.88	uncharacterized protein LOC111790380 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS013261 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D308	1.9e-72	100.00	uncharacterized protein LOC111016865 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1J075	7.1e-59	84.14	uncharacterized protein LOC111480022 OS=Cucurbita maxima OX=3661 GN=LOC111480022...	[more]
A0A6J1GTX5	3.0e-57	82.88	uncharacterized protein LOC111457504 OS=Cucurbita moschata OX=3662 GN=LOC1114575...	[more]
A0A5A7VAF7	1.4e-51	77.08	Putative ribosomal-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4DV46	1.4e-51	77.08	uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=...	[more]

BLAST of MS013261 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16790.1	3.1e-30	49.32	ribosomal protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013261.1	MS013261.1	mRNA