MS013230 (gene) Bitter gourd (TR) v1

Overview


Name	MS013230
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein 3, chloroplastic-like
Location	scaffold459: 1397821 .. 1400043 (+)
RNA-Seq Expression	MS013230
Synteny	MS013230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTATCCATGGCAGTTCAGCTTCAGCCCAACATCAATTTCTGTCTCAATACCTTCAATTTCCCTGCTCAGAACGCCACTTCAAAACCCTTTCAAGTTCTTTTTCCTGTGAAGCAAAGAACCACCGCCTCCTACTCCTTGTCTCCCTCTTCTTCGACCTCTTCCTGCATTGCCCACTCGCATTCTTTTTCTGGATTGAAATTCAGGCGCCAAAACTTTAGAAATCTCGAAGTCTCTGCTCCAGCTGCGGCCACCGAAGCTGTAGAAGCTGCTTCAGAATCGCCCGTCGTTGATGATTCCGACTCCGTGTCTTCTCCTGTTAAGGAGGTATCTCTCTTCTCACCTATATGCTTGTTCTGTTTAGTGAGCTGAAATTAATTCTTGTTTTGTTTACTTGATTGGGGTTGTTCAAAACTTGGGGGAGAGCAAGGGGAAGTTTAGTAAAGAAACAGCATCATTGTTGTTAAGTTAATGGAGAGAGGGACGGATTAAATTGGTGAACTTGGTTTGTCTTCCTCCATCTCTGGTATAGAACTCGGTTAGTTGAAACCTTGTCGTATTTATTGAAACTGTACCACGAAAACACTTGAATTCTTTGAAACCCAATTGCCCACTATAATTTGGTTCGTGGAGTAGACTTATTATTTCTATACAATGATGAAAGGTGTGATGTAAACGAATGCTCTGTGAGTTACATTTGAGGAAAATACTAATGAGAATGCTGGTGTTGATTTTGACGAAAACCTAAATGATAACTAAATTTCGAATGAACATATGGAAGAAGATCAATTCTAACCCTCTAGTTAGATGATTGAGGCAACTTTAACCTTAAAATGTTAAATCTCATTAACTGAGCCTTATGTTTGAATAAACAATGAATTAATACCATCGTTGGTTGAGTTGCTATTTCCTTTAGGTTTGTGGTTAGATGTGTGCGTTGTTGTGAAGGAATTGGGATGTGTTATTTTTGTGAATGGTCATTTTTATTGTTGGCTTCAGCAATTCTTTTGGTTGGATTTGGATGCTTTGGTGTTGGGTTGCAGGTATGTCTTTGGTTGTTTGACTTTGTGACTGGATTTGGGTGTCTCATCGCTGAGTTTGGTATTTTGTAGTTGAAAAATTTGAGTGCTTTACTTTCTGAATTTTGAGTGATTTCTTAGTTGCCTTCTTAGCAATTTTTTAGTTTGATTTTGAGGAGGATGTTAACTTCACCAATTATTCAAGTTTGGGACTTAATTTCATGAATCAAGAACTTTAAGATTAAAATTAACTCACCTAGCTAAGTTCACGTGGAAATTTTTTTTTTAAGGGGATGTTTTTAGTTGTTGTTAAGCTTAGGTCTATGAAGTGTAAGATTGGGAAGCTTAGATTTGTTTAATTTGTATTTAGATTTTGCTAAAGAACAAGTTATAAATTTTGCATAGAGTACCTTTGGTTCAATTTCAAAAGGTGGTTTTATAGTTTGGATTTATGTAACTCATGGAATTAGCAAATTCATAACCTAGAATAAGACTTATAACTTGGATATACGAGTAAGCTCACATACTAAATATAGGCTTACCTCTTGACGTTGAGCTGCACAAATCTAACTTGTGTGTCAAACACGTCTTTTATGTAACACAATACAATATTTAGAACAACTCTAATGATAAATATTTTTTAAAACAAACCCATGCAGTAATCATATTATTTCTCCTGATCTTTACTTTACCGATATTAGAGTCTTAGAGAAAATCTCCCTCTCTTTGAATCAATGTCAAATACTGATTTTATAACAGAGAATTTCTTTGTTATTCTCATTATTTTTATGTAGCAAAATGCAAAGATAATTTGGATTTGGATTTTATAGTTCCCTTTTGCTTATACAAATGAAATGTTGAGCAAAATAGATTTATTATGGAGGTCTCATGCAAAATAAATGTTCACTTTTTGACGTTGTAGAAGCTTGGAGTCGTTGTGAAACCGATGGAAAAGTCGAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGCATTGCACTTGATCAGATGATTCCTGGTCATGGTACTATTCCTCTTAGTCCATACTACTTCTGGCCTCGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAACCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTTAATCAGGCAACTGATATCATCAATTTGTGGCAGCAGGGTGGTGGCAATCTGGCT

mRNA sequence

ATGATGTTATCCATGGCAGTTCAGCTTCAGCCCAACATCAATTTCTGTCTCAATACCTTCAATTTCCCTGCTCAGAACGCCACTTCAAAACCCTTTCAAGTTCTTTTTCCTGTGAAGCAAAGAACCACCGCCTCCTACTCCTTGTCTCCCTCTTCTTCGACCTCTTCCTGCATTGCCCACTCGCATTCTTTTTCTGGATTGAAATTCAGGCGCCAAAACTTTAGAAATCTCGAAGTCTCTGCTCCAGCTGCGGCCACCGAAGCTGTAGAAGCTGCTTCAGAATCGCCCGTCGTTGATGATTCCGACTCCGTGTCTTCTCCTGTTAAGGAGAAGCTTGGAGTCGTTGTGAAACCGATGGAAAAGTCGAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGCATTGCACTTGATCAGATGATTCCTGGTCATGGTACTATTCCTCTTAGTCCATACTACTTCTGGCCTCGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAACCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTTAATCAGGCAACTGATATCATCAATTTGTGGCAGCAGGGTGGTGGCAATCTGGCT

Coding sequence (CDS)

ATGATGTTATCCATGGCAGTTCAGCTTCAGCCCAACATCAATTTCTGTCTCAATACCTTCAATTTCCCTGCTCAGAACGCCACTTCAAAACCCTTTCAAGTTCTTTTTCCTGTGAAGCAAAGAACCACCGCCTCCTACTCCTTGTCTCCCTCTTCTTCGACCTCTTCCTGCATTGCCCACTCGCATTCTTTTTCTGGATTGAAATTCAGGCGCCAAAACTTTAGAAATCTCGAAGTCTCTGCTCCAGCTGCGGCCACCGAAGCTGTAGAAGCTGCTTCAGAATCGCCCGTCGTTGATGATTCCGACTCCGTGTCTTCTCCTGTTAAGGAGAAGCTTGGAGTCGTTGTGAAACCGATGGAAAAGTCGAGGCTTGTGCTAAAGTTCATATGGATGGAGAAGAACATTGGCATTGCACTTGATCAGATGATTCCTGGTCATGGTACTATTCCTCTTAGTCCATACTACTTCTGGCCTCGGAAAGATGCATGGGAAGAGCTCAAAGTTTTACTTGAGAGCAAACCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTTAATCAGGCAACTGATATCATCAATTTGTGGCAGCAGGGTGGTGGCAATCTGGCT

Protein sequence

MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAHSHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPMEKSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA

Homology

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BLAST of MS013230 vs. NCBI nr
Match: XP_022148098.1 (30S ribosomal protein 3, chloroplastic-like [Momordica charantia])

HSP 1 Score: 390.6 bits (1002), Expect = 8.4e-105
Identity = 199/202 (98.51%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPNINFCLNT NFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 61  SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
           SH FSG KFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 203
           MIILLNQATDIINLWQQGGGNL
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of MS013230 vs. NCBI nr
Match: XP_023522262.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.3 bits (817), Expect = 2.4e-83
Identity = 168/203 (82.76%), Postives = 178/203 (87.68%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN+NFCLNT  F + NATSKP+QV F +KQRTTA    SPSSS SSCIA 
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPYQVPFSLKQRTTA--LSSPSSSISSCIAD 60

Query: 61  SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            +S SGLK RRQ+FR L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  VYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNLA 204
           MIILLNQATDIINLWQQGGG+LA
Sbjct: 181 MIILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of MS013230 vs. NCBI nr
Match: KAG6607038.1 (30S ribosomal protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 316.2 bits (809), Expect = 2.0e-82
Identity = 167/203 (82.27%), Postives = 177/203 (87.19%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN NFCLNT  F + NATSKP+Q+ F +KQRTTA    SPSSS SSCIA 
Sbjct: 18  MMLSMAVQLQPNFNFCLNTPTFSSHNATSKPYQLPFALKQRTTA--LSSPSSSISSCIAD 77

Query: 61  SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            +S SGLK RRQ+FR L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 78  VYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 137

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 138 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 197

Query: 181 MIILLNQATDIINLWQQGGGNLA 204
           MIILLNQATDIINLWQQGGG+LA
Sbjct: 198 MIILLNQATDIINLWQQGGGSLA 218

[Close]

BLAST of MS013230 vs. NCBI nr
Match: XP_022997676.1 (30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 5.8e-82
Identity = 166/203 (81.77%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN+NFCLNT  F + NATSKP QV F +KQRT A    SPSSS SSCIA 
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNA--LSSPSSSISSCIAD 60

Query: 61  SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            +S SGLK RRQ+F+ L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  VYSVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNLA 204
           MIILLNQATDIINLWQQGGG+LA
Sbjct: 181 MIILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of MS013230 vs. NCBI nr
Match: XP_038875586.1 (30S ribosomal protein 3, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 314.3 bits (804), Expect = 7.6e-82
Identity = 164/203 (80.79%), Postives = 170/203 (83.74%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN+NFC NT NF AQ ATSKPFQV F VKQR+T          +SSCI +
Sbjct: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRST----------SSSCITN 60

Query: 61  SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            HS S  K R QNFR L++SA A A EA EAA ES V DDSDS SSPVKEKLGVVVKPME
Sbjct: 61  LHSVSASKLRHQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNLA 204
           MIILLNQATDIINLWQQGGGNLA
Sbjct: 181 MIILLNQATDIINLWQQGGGNLA 193

[Close]

BLAST of MS013230 vs. ExPASy Swiss-Prot
Match: P82412 (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-47
Identity = 115/202 (56.93%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 2   MLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAHS 61
           MLSMAV  QPNIN       + +   + KPF+               +P+ +       S
Sbjct: 1   MLSMAV--QPNINAIAKPSIYQSPKLSLKPFK---------------TPAFANPKPFFSS 60

Query: 62  HSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPMEK 121
            SFS LK  ++N  +L V AP   ++     +E  + DD        KEKL V+VKPM+K
Sbjct: 61  PSFSQLK--KKNNWSLFV-APETISDVAIMGNEVDIDDD----LLVNKEKLKVLVKPMDK 120

Query: 122 SRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQM 181
            RLVLKFIWMEKNIG+ALDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQM
Sbjct: 121 PRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQM 178

Query: 182 IILLNQATDIINLWQQGGGNLA 204
           IILLNQATDIINLWQQ GGNLA
Sbjct: 181 IILLNQATDIINLWQQSGGNLA 178

[Close]

BLAST of MS013230 vs. ExPASy Swiss-Prot
Match: O48609 (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.8e-40
Identity = 94/170 (55.29%), Postives = 110/170 (64.71%), Query Frame = 0


Query: 41  RTTASYSLSPSSSTSSCIAHSHSFSGLKFRRQNFRNLEVSAPAAATEAVEA-------AS 100
           R   S     + S+SS + H      LK RR   R+L     AAA  AVEA         
Sbjct: 17  RPRVSLPRPSTPSSSSSLVH------LKSRRPPLRSLRSLTAAAAAAAVEAGEPYFGLGD 76

Query: 101 ESPVVDDSDSVSSPVKEKLGVVVKPMEKSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSP 160
           + P+  + D+ +    E+  V V   +   LVLKFIWMEKNIGIALDQM+PG G+IPLSP
Sbjct: 77  DEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSP 136

Query: 161 YYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 204
           YYFWPRKDAWEEL+  LE K WISQKQMIILLNQATDIINLWQQGGG+L+
Sbjct: 137 YYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLS 180

[Close]

BLAST of MS013230 vs. ExPASy Swiss-Prot
Match: Q9SX22 (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.2e-39
Identity = 92/163 (56.44%), Postives = 111/163 (68.10%), Query Frame = 0


Query: 44  ASYSLSPSSSTSSCIAH----SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVD 103
           +S +LS +S  SS I+     S + S   F  Q  + + V        A E  +   V  
Sbjct: 3   SSMALSSTSLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTG 62

Query: 104 DSDSVSSPVKEKLGVVVKPMEKSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPR 163
              S ++P  ++   VVKP EKSR+VLKF+WMEKNIG+ LDQ +PGHGTIPLSPY+FWPR
Sbjct: 63  IDTSDNTP--QQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPR 122

Query: 164 KDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 203
           KDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 123 KDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of MS013230 vs. ExPASy Swiss-Prot
Match: Q9LFV0 (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.0e-38
Identity = 96/201 (47.76%), Postives = 124/201 (61.69%), Query Frame = 0


Query: 5   MAVQLQPNINFCLNTFNFPAQNATSKPF-QVLFPVKQRTTASYSLSPSSSTSSCIAHSHS 64
           MAVQ   + +F   T + P+Q  +SKP   +    K + ++  SLS S+     I   HS
Sbjct: 1   MAVQANQSASFGFRTAS-PSQKLSSKPIAHISLSTKLKPSSRPSLSCSTWNQGQIPARHS 60

Query: 65  FSGLKFRRQNFRNLEVSAPAAATEAVE-AASESPVVDDSDSVSSPVKEKLGVVVKPMEKS 124
                        +    P+  T + E   SESP +          K+K+ V+VKP+EK 
Sbjct: 61  CIN--------PGIFAYPPSNLTFSHELPESESPPLG---------KKKMRVLVKPLEKP 120

Query: 125 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 184
           ++VLKF+WM+K+IG+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   +
Sbjct: 121 KVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRV 180

Query: 185 ILLNQATDIINLWQQGGGNLA 204
            LLNQATDIINLWQ  GG+L+
Sbjct: 181 FLLNQATDIINLWQSSGGDLS 183

[Close]

BLAST of MS013230 vs. ExPASy Swiss-Prot
Match: P51351 (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-22
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 122 SRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQM 181
           S+  LK +W+E NI IA+DQ++ G+GT PL+ Y+FWPR DAWEELK  LESKPWI+++  
Sbjct: 2   SKFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDR 61

Query: 182 IILLNQATDIINLWQQGG 200
           I LLN+ T++IN WQ+ G
Sbjct: 62  IELLNKTTEVINYWQEEG 78

[Close]

BLAST of MS013230 vs. ExPASy TrEMBL
Match: A0A6J1D356 (30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016859 PE=3 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.1e-105
Identity = 199/202 (98.51%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPNINFCLNT NFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 61  SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
           SH FSG KFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNL 203
           MIILLNQATDIINLWQQGGGNL
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of MS013230 vs. ExPASy TrEMBL
Match: A0A6J1K853 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492568 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.8e-82
Identity = 166/203 (81.77%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN+NFCLNT  F + NATSKP QV F +KQRT A    SPSSS SSCIA 
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNA--LSSPSSSISSCIAD 60

Query: 61  SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            +S SGLK RRQ+F+ L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  VYSVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNLA 204
           MIILLNQATDIINLWQQGGG+LA
Sbjct: 181 MIILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of MS013230 vs. ExPASy TrEMBL
Match: A0A1S3CF24 (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 6.3e-82
Identity = 167/203 (82.27%), Postives = 173/203 (85.22%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN++FC NT NF AQ A SKPFQ+ F VKQRTTA          SSCI +
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPA-SKPFQLPFAVKQRTTA----------SSCIPN 60

Query: 61  SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            HS  GLK RRQN R  E+SA A +TEAVEAASES V DDSDSVSSPVKEKLGVVVKPME
Sbjct: 61  FHSVFGLKLRRQNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNLA 204
           MIILLNQATDIINLWQQGGGNLA
Sbjct: 181 MIILLNQATDIINLWQQGGGNLA 192

[Close]

BLAST of MS013230 vs. ExPASy TrEMBL
Match: A0A6J1GBD3 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111452451 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.1e-81
Identity = 165/203 (81.28%), Postives = 175/203 (86.21%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAV L PN NFCLNT  F + NATSKP+Q+ F +KQRTTA    SPSSS SSCIA 
Sbjct: 1   MMLSMAVHLPPNFNFCLNTSTFSSHNATSKPYQLPFALKQRTTA--LSSPSSSISSCIAD 60

Query: 61  SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            +S SGLK RRQ+FR L+VSA AAA +AV+A SESPV DDS S SSP KEKLGVVVKPME
Sbjct: 61  VYSVSGLKLRRQSFRTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPME 120

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 181 MIILLNQATDIINLWQQGGGNLA 204
           MIILLNQATDIINLWQQGGG+LA
Sbjct: 181 MIILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of MS013230 vs. ExPASy TrEMBL
Match: A0A0A0L9T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.2e-80
Identity = 164/203 (80.79%), Postives = 172/203 (84.73%), Query Frame = 0


Query: 1   MMLSMAVQLQPNINFCLNTFNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60
           MMLSMAVQLQPN+NFC NT NF AQ A SKPF++ F V+QRTTA          SSCI +
Sbjct: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTA----------SSCIPN 81

Query: 61  SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120
            H+  GL+ RRQNFR  E+SA AA  EAVEAASE  V DDSDSVSSPVKEKLGVVVKPME
Sbjct: 82  FHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPME 141

Query: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 142 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 201

Query: 181 MIILLNQATDIINLWQQGGGNLA 204
           MIILLNQATDIINLWQQGGGNLA
Sbjct: 202 MIILLNQATDIINLWQQGGGNLA 213

[Close]

BLAST of MS013230 vs. TAIR 10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-40
Identity = 92/163 (56.44%), Postives = 111/163 (68.10%), Query Frame = 0


Query: 44  ASYSLSPSSSTSSCIAH----SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVD 103
           +S +LS +S  SS I+     S + S   F  Q  + + V        A E  +   V  
Sbjct: 3   SSMALSSTSLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTG 62

Query: 104 DSDSVSSPVKEKLGVVVKPMEKSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPR 163
              S ++P  ++   VVKP EKSR+VLKF+WMEKNIG+ LDQ +PGHGTIPLSPY+FWPR
Sbjct: 63  IDTSDNTP--QQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPR 122

Query: 164 KDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 203
           KDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 123 KDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of MS013230 vs. TAIR 10
Match: AT1G68590.2 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 161.4 bits (407), Expect = 7.7e-40
Identity = 90/163 (55.21%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 44  ASYSLSPSSSTSSCIAH----SHSFSGLKFRRQNFRNLEVSAPAAATEAVEAASESPVVD 103
           +S +LS +S  SS I+     S + S   F  Q  + + V        A E  +   V  
Sbjct: 3   SSMALSSTSLCSSFISQHPKLSITASPPLFHTQTTKPISVKRKIITLAAPETLTAETVTG 62

Query: 104 DSDSVSSPVKEKLGVVVKPMEKSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPR 163
              S ++P +      +KP EKSR+VLKF+WMEKNIG+ LDQ +PGHGTIPLSPY+FWPR
Sbjct: 63  IDTSDNTPQQ-----TIKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPR 122

Query: 164 KDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 203
           KDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 123 KDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 160

[Close]

BLAST of MS013230 vs. TAIR 10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 158.7 bits (400), Expect = 5.0e-39
Identity = 96/201 (47.76%), Postives = 124/201 (61.69%), Query Frame = 0


Query: 5   MAVQLQPNINFCLNTFNFPAQNATSKPF-QVLFPVKQRTTASYSLSPSSSTSSCIAHSHS 64
           MAVQ   + +F   T + P+Q  +SKP   +    K + ++  SLS S+     I   HS
Sbjct: 1   MAVQANQSASFGFRTAS-PSQKLSSKPIAHISLSTKLKPSSRPSLSCSTWNQGQIPARHS 60

Query: 65  FSGLKFRRQNFRNLEVSAPAAATEAVE-AASESPVVDDSDSVSSPVKEKLGVVVKPMEKS 124
                        +    P+  T + E   SESP +          K+K+ V+VKP+EK 
Sbjct: 61  CIN--------PGIFAYPPSNLTFSHELPESESPPLG---------KKKMRVLVKPLEKP 120

Query: 125 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 184
           ++VLKF+WM+K+IG+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   +
Sbjct: 121 KVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRV 180

Query: 185 ILLNQATDIINLWQQGGGNLA 204
            LLNQATDIINLWQ  GG+L+
Sbjct: 181 FLLNQATDIINLWQSSGGDLS 183

The following BLAST results are available for this feature:

BLAST of MS013230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148098.1	8.4e-105	98.51	30S ribosomal protein 3, chloroplastic-like [Momordica charantia]	[more]
XP_023522262.1	2.4e-83	82.76	30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6607038.1	2.0e-82	82.27	30S ribosomal protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022997676.1	5.8e-82	81.77	30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima]	[more]
XP_038875586.1	7.6e-82	80.79	30S ribosomal protein 3, chloroplastic-like [Benincasa hispida]	[more]

BLAST of MS013230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82412	1.7e-47	56.93	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
O48609	9.8e-40	55.29	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
Q9SX22	2.2e-39	56.44	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
Q9LFV0	7.0e-38	47.76	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
P51351	3.2e-22	57.69	Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=...	[more]

BLAST of MS013230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D356	4.1e-105	98.51	30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1K853	2.8e-82	81.77	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3CF24	6.3e-82	82.27	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A6J1GBD3	1.1e-81	81.28	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A0A0L9T8	1.2e-80	80.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1	[more]

BLAST of MS013230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68590.1	1.6e-40	56.44	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.2	7.7e-40	55.21	Ribosomal protein PSRP-3/Ycf65	[more]
AT5G15760.1	5.0e-39	47.76	Ribosomal protein PSRP-3/Ycf65	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	3.30.390.140		coord: 123..201 e-value: 3.1E-33 score: 115.7
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 151..197 e-value: 1.1E-26 score: 92.7
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..203
None	No IPR available	PANTHER	PTHR35108:SF1	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 2..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013230.1	MS013230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome