MS013228 (gene) Bitter gourd (TR) v1

Overview
NameMS013228
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionconserved peptide upstream open reading frame 11
Locationscaffold459: 1393635 .. 1393808 (+)
RNA-Seq ExpressionMS013228
SyntenyMS013228
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGAATGATTTAATGGAGTCTAAAGGTGGCAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCTCCCCTCGGTTACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACGTATGTTCCTACTTTTTA

mRNA sequence

GCGAATGATTTAATGGAGTCTAAAGGTGGCAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCTCCCCTCGGTTACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACGTATGTTCCTACTTTTTA

Coding sequence (CDS)

GCGAATGATTTAATGGAGTCTAAAGGTGGCAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCTCCCCTCGGTTACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACGTATGTTCCTACTTTTTA

Protein sequence

ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVCSYFL
Homology
BLAST of MS013228 vs. NCBI nr
Match: KAE8650573.1 (hypothetical protein Csa_010068 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 53
          ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN
Sbjct: 10 ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 61

BLAST of MS013228 vs. NCBI nr
Match: KAG7036737.1 (S-adenosylmethionine decarboxylase proenzyme, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0

Query: 1  ANDLMESKGGKKK-SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV 54
          ANDLMESKGGKKK SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN+
Sbjct: 34 ANDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNM 87

BLAST of MS013228 vs. NCBI nr
Match: TKY69456.1 (S-adenosyl-l-methionine decarboxylase leader peptide [Spatholobus suberectus])

HSP 1 Score: 96.7 bits (239), Expect = 7.1e-17
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 2  NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 53
          N+LMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRP+GGIKKFRSAAYSN
Sbjct: 39 NELMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSN 89

BLAST of MS013228 vs. NCBI nr
Match: KAG6607040.1 (Uridine kinase-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 9.3e-17
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 2   NDLMESKGGKKK-SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 53
           NDLMESKGGKKK SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN
Sbjct: 545 NDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 596

BLAST of MS013228 vs. NCBI nr
Match: KAG7017910.1 (hypothetical protein SDJN02_19776, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 9.3e-17
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 1   ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 53
           ANDLMESKGGKKK SSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN
Sbjct: 97  ANDLMESKGGKKK-SSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 147

BLAST of MS013228 vs. ExPASy TrEMBL
Match: A0A0A0LAP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271350 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.2e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 53
          ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN
Sbjct: 35 ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 86

BLAST of MS013228 vs. ExPASy TrEMBL
Match: A0A059ADW4 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01448 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0

Query: 2   NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVC 55
           N+LMESKGGKKK   SSSSKSLFYEAPLGYSIED+RPHGGIKKFRSAAYSNVC
Sbjct: 78  NELMESKGGKKK---SSSSKSLFYEAPLGYSIEDLRPHGGIKKFRSAAYSNVC 127

BLAST of MS013228 vs. ExPASy TrEMBL
Match: A0A1R3J120 (Adenosylmethionine decarboxylase OS=Corchorus capsularis OX=210143 GN=CCACVL1_08337 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 2  NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVCS 56
          NDLMESKGGKKK   SSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN+ S
Sbjct: 7  NDLMESKGGKKK---SSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNMAS 57

BLAST of MS013228 vs. ExPASy TrEMBL
Match: A0A6A5NYN2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00025433 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-16
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0

Query: 2  NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 53
          NDLMESKGGKKKSSSSSS  SLFYEAPLGYSIEDVRP+GGI+KFRSAAYSN
Sbjct: 10 NDLMESKGGKKKSSSSSSKSSLFYEAPLGYSIEDVRPNGGIEKFRSAAYSN 60

BLAST of MS013228 vs. ExPASy TrEMBL
Match: A0A151QZ93 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_043309 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.5e-16
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 2  NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV 54
          N+LMESKGGKKK SSSSSSKSLFYEAPLGYSIED+RP+GGIKKFRSAAYSNV
Sbjct: 4  NELMESKGGKKK-SSSSSSKSLFYEAPLGYSIEDIRPNGGIKKFRSAAYSNV 54

BLAST of MS013228 vs. TAIR 10
Match: AT3G25572.1 (conserved peptide upstream open reading frame 11 )

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-16
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 5  MESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNV 54
          ME+KGGKKKSS+SSS  SLF+EAPL YSIEDVRP+GGIKKFRSAAYSN+
Sbjct: 1  METKGGKKKSSNSSSRDSLFFEAPLRYSIEDVRPNGGIKKFRSAAYSNI 49

BLAST of MS013228 vs. TAIR 10
Match: AT3G02468.1 (conserved peptide upstream open reading frame 9 )

HSP 1 Score: 80.1 bits (196), Expect = 6.5e-16
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 4  LMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNVCS 56
          +MESKGGKKKSSSSS   SLFYEAPLGYSIEDVRP+GGIKKF+S+ YSN CS
Sbjct: 1  MMESKGGKKKSSSSS---SLFYEAPLGYSIEDVRPNGGIKKFKSSVYSN-CS 48

BLAST of MS013228 vs. TAIR 10
Match: AT5G15948.1 (conserved peptide upstream open reading frame 10 )

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 5  MESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSN 53
          MESK G KKSSS+S   SL YEAPLGYSIEDVRP GGIKKF+S+ YSN
Sbjct: 1  MESKAGNKKSSSNS---SLCYEAPLGYSIEDVRPFGGIKKFKSSVYSN 45

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650573.11.7e-18100.00hypothetical protein Csa_010068 [Cucumis sativus][more]
KAG7036737.12.5e-1796.30S-adenosylmethionine decarboxylase proenzyme, partial [Cucurbita argyrosperma su... [more]
TKY69456.17.1e-1796.08S-adenosyl-l-methionine decarboxylase leader peptide [Spatholobus suberectus][more]
KAG6607040.19.3e-1798.08Uridine kinase-like protein 2, chloroplastic, partial [Cucurbita argyrosperma su... [more]
KAG7017910.19.3e-1798.08hypothetical protein SDJN02_19776, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LAP28.2e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271350 PE=4 SV=1[more]
A0A059ADW41.7e-1690.57Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01... [more]
A0A1R3J1202.2e-1690.74Adenosylmethionine decarboxylase OS=Corchorus capsularis OX=210143 GN=CCACVL1_08... [more]
A0A6A5NYN23.8e-1692.16Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00025433 PE=4 SV=1[more]
A0A151QZ938.5e-1692.31Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_043309 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT3G25572.11.3e-1683.67conserved peptide upstream open reading frame 11 [more]
AT3G02468.16.5e-1682.69conserved peptide upstream open reading frame 9 [more]
AT5G15948.11.1e-1277.08conserved peptide upstream open reading frame 10 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012511S-adenosyl-l-methionine decarboxylase leader peptidePFAMPF08132AdoMetDC_leadercoord: 5..53
e-value: 4.5E-27
score: 93.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR35727:SF7SUBFAMILY NOT NAMEDcoord: 1..54
NoneNo IPR availablePANTHERPTHR35727BNAA05G33520D PROTEINcoord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013228.1MS013228.1mRNA