MS013216 (gene) Bitter gourd (TR) v1

Overview
NameMS013216
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReticulon family protein
Locationscaffold459: 1266566 .. 1266883 (-)
RNA-Seq ExpressionMS013216
SyntenyMS013216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTATCCAATTCAAGAACTCATCGGTTATATCATTCCATCCAAATTTTCTTGGATGAGGGCCTCCCTTGGACCAATCAACCCAAGTAATGCTCCTATTACAATTCAACTGTGGCTCCAACATATTCACCAAAGTTGGTATGTAATGCTCGTCCATGTAGCAAGGGGGGAGGCAATGGCTCTTGAAGATCGGATAGTACCTCGTGTCGGAGACGATGCGGAGGGCAAGCTCGCGGTGTATCTCAAACCACTGGGAACCCTTTCGCCAATCGGTTACGTTCACCGCAGGCGACATTTTAGGGTTGTAGCGGCCGCGGCC

mRNA sequence

CCTTATCCAATTCAAGAACTCATCGGTTATATCATTCCATCCAAATTTTCTTGGATGAGGGCCTCCCTTGGACCAATCAACCCAAGTAATGCTCCTATTACAATTCAACTGTGGCTCCAACATATTCACCAAAGTTGGTATGTAATGCTCGTCCATGTAGCAAGGGGGGAGGCAATGGCTCTTGAAGATCGGATAGTACCTCGTGTCGGAGACGATGCGGAGGGCAAGCTCGCGGTGTATCTCAAACCACTGGGAACCCTTTCGCCAATCGGTTACGTTCACCGCAGGCGACATTTTAGGGTTGTAGCGGCCGCGGCC

Coding sequence (CDS)

CCTTATCCAATTCAAGAACTCATCGGTTATATCATTCCATCCAAATTTTCTTGGATGAGGGCCTCCCTTGGACCAATCAACCCAAGTAATGCTCCTATTACAATTCAACTGTGGCTCCAACATATTCACCAAAGTTGGTATGTAATGCTCGTCCATGTAGCAAGGGGGGAGGCAATGGCTCTTGAAGATCGGATAGTACCTCGTGTCGGAGACGATGCGGAGGGCAAGCTCGCGGTGTATCTCAAACCACTGGGAACCCTTTCGCCAATCGGTTACGTTCACCGCAGGCGACATTTTAGGGTTGTAGCGGCCGCGGCC

Protein sequence

PYPIQELIGYIIPSKFSWMRASLGPINPSNAPITIQLWLQHIHQSWYVMLVHVARGEAMALEDRIVPRVGDDAEGKLAVYLKPLGTLSPIGYVHRRRHFRVVAAAA
Homology
BLAST of MS013216 vs. NCBI nr
Match: KAA0058092.1 (hypothetical protein E6C27_scaffold274G004000 [Cucumis melo var. makuwa] >TYK28445.1 hypothetical protein E5676_scaffold629G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 0

Query: 1   PYPIQELIGYIIPSKFSWMRASLGPINPSNAPITIQLWLQHIHQSWYVMLVHVARGEAMA 60
           P  +++  G I   +   MRA+ GP++PS  P+ + L      + W V+LVHV R  A  
Sbjct: 17  PQSLKQFNGDIGSDEPGRMRAASGPVDPSQGPVGVGLRESDSDKGWKVVLVHVTRRFAEF 76

Query: 61  LEDRIVPRVGDDAEGKLAVYLKPLGTLSPIGYVHRRRHFRVVAAAA 107
           LED  +  +GDD  G  +V+ +PLGTL+P+  +    HF  VAA+A
Sbjct: 77  LEDGEILLIGDDLGGDGSVHFEPLGTLTPLMEIDYGAHFWAVAASA 122

BLAST of MS013216 vs. NCBI nr
Match: GER32793.1 (reticulon family protein [Striga asiatica])

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-07
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 0

Query: 1   PYPIQELIGYIIPSKFSWMRASLGPINPSNAPITI---QLWLQH-IHQSWYVMLVHVARG 60
           P P++E   +    + SW+  +  P++P    + +   +   +H  H+   V+LV VAR 
Sbjct: 92  PQPLEETRIHTSADELSWVGTTPRPVDPRQRSVGVPRRKTAREHAAHEGRKVVLVRVARP 151

Query: 61  EAMALEDRIVPRVGDDAEGKLAVYLKPLGTLSPIGYVHRRRHFRVVAAAA 107
            A+A E R V  VGDD E ++AV  +PLG L+P+G    R H   VAAAA
Sbjct: 152 LAIAFEGREVGGVGDDLECQVAVDREPLGALAPVGEAEGRGHVETVAAAA 201

BLAST of MS013216 vs. NCBI nr
Match: KAG7023305.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 21  ASLGPINPSNAPITIQLWLQHIHQSWYVMLVHVARGEAMALEDRIVPRVGDDAEGKLAVY 80
           A+ GP++PS  P+ I        +   V+LVHV RG A+  ED  V  VGD+  G+ +V 
Sbjct: 478 AAFGPVDPSQGPVGIGGGEVDSDEGGEVVLVHVTRGLAVLPEDGEVFLVGDNLGGEGSVN 537

Query: 81  LKPLGTLSPIGYVHRRRHFRVVAA 105
           L+PLG L+P+  V    H   VAA
Sbjct: 538 LEPLGALAPLVEVDCGAHLGFVAA 561

BLAST of MS013216 vs. NCBI nr
Match: PKA54109.1 (hypothetical protein AXF42_Ash018119 [Apostasia shenzhenica])

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = 0

Query: 1   PYPIQELIGYIIPSKFSWMRASLGPINPSNAPITIQ-LWLQHIHQSWYVMLVHVARGEAM 60
           P+P+Q+L G  +  K   M A+ GP++P  AP+  +       H    V++       A 
Sbjct: 24  PHPLQQLDGDRLAEKPRRMGAAGGPVDPREAPVGGKGAEADGGHGGQVVLVGEAVAAAAG 83

Query: 61  ALEDRIVPRVGDDAEGKLAVYLKPLGTLSPIGYVHRRRHFRVVAAAA 107
           A ED     VG+D EG++A  L+PLG L+P    +   H   VAAAA
Sbjct: 84  AAEDGEEEVVGNDVEGEVAAELEPLGALAPEARGNDASHEGAVAAAA 130

BLAST of MS013216 vs. ExPASy TrEMBL
Match: A0A5D3DYP5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00770 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.5e-10
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 0

Query: 1   PYPIQELIGYIIPSKFSWMRASLGPINPSNAPITIQLWLQHIHQSWYVMLVHVARGEAMA 60
           P  +++  G I   +   MRA+ GP++PS  P+ + L      + W V+LVHV R  A  
Sbjct: 17  PQSLKQFNGDIGSDEPGRMRAASGPVDPSQGPVGVGLRESDSDKGWKVVLVHVTRRFAEF 76

Query: 61  LEDRIVPRVGDDAEGKLAVYLKPLGTLSPIGYVHRRRHFRVVAAAA 107
           LED  +  +GDD  G  +V+ +PLGTL+P+  +    HF  VAA+A
Sbjct: 77  LEDGEILLIGDDLGGDGSVHFEPLGTLTPLMEIDYGAHFWAVAASA 122

BLAST of MS013216 vs. ExPASy TrEMBL
Match: A0A0A0LSQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024225 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0

Query: 1   PYPIQELIGYIIPSKFSWMRASLGPINPSNAPITIQLWLQHIHQSWYVMLVHVARGEAMA 60
           P P+++  G I  ++   + A+ GPI+PS  P+ + L     ++   V+LVHVAR  A  
Sbjct: 17  PQPLKQFKGDIGSNEPGRVSAASGPIDPSQGPVGVGLRESDSNKGGEVVLVHVARRFAKF 76

Query: 61  LEDRIVPRVGDDAEGKLAVYLKPLGTLSPIGYVHRRRHFRVVAAAA 107
           LED  +  VGDD  G  +V+ +PLGTL+P+  +    HF VVAA+A
Sbjct: 77  LEDGEILLVGDDLGGDGSVHFEPLGTLAPLMELDYWPHFWVVAASA 122

BLAST of MS013216 vs. ExPASy TrEMBL
Match: A0A5A7PIV6 (Reticulon family protein OS=Striga asiatica OX=4170 GN=STAS_08888 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 0

Query: 1   PYPIQELIGYIIPSKFSWMRASLGPINPSNAPITI---QLWLQH-IHQSWYVMLVHVARG 60
           P P++E   +    + SW+  +  P++P    + +   +   +H  H+   V+LV VAR 
Sbjct: 92  PQPLEETRIHTSADELSWVGTTPRPVDPRQRSVGVPRRKTAREHAAHEGRKVVLVRVARP 151

Query: 61  EAMALEDRIVPRVGDDAEGKLAVYLKPLGTLSPIGYVHRRRHFRVVAAAA 107
            A+A E R V  VGDD E ++AV  +PLG L+P+G    R H   VAAAA
Sbjct: 152 LAIAFEGREVGGVGDDLECQVAVDREPLGALAPVGEAEGRGHVETVAAAA 201

BLAST of MS013216 vs. ExPASy TrEMBL
Match: A0A2I0AEY0 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash018119 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = 0

Query: 1   PYPIQELIGYIIPSKFSWMRASLGPINPSNAPITIQ-LWLQHIHQSWYVMLVHVARGEAM 60
           P+P+Q+L G  +  K   M A+ GP++P  AP+  +       H    V++       A 
Sbjct: 24  PHPLQQLDGDRLAEKPRRMGAAGGPVDPREAPVGGKGAEADGGHGGQVVLVGEAVAAAAG 83

Query: 61  ALEDRIVPRVGDDAEGKLAVYLKPLGTLSPIGYVHRRRHFRVVAAAA 107
           A ED     VG+D EG++A  L+PLG L+P    +   H   VAAAA
Sbjct: 84  AAEDGEEEVVGNDVEGEVAAELEPLGALAPEARGNDASHEGAVAAAA 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0058092.11.5e-0937.74hypothetical protein E6C27_scaffold274G004000 [Cucumis melo var. makuwa] >TYK284... [more]
GER32793.12.5e-0736.36reticulon family protein [Striga asiatica][more]
KAG7023305.12.6e-0440.48LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2, par... [more]
PKA54109.17.4e-0434.58hypothetical protein AXF42_Ash018119 [Apostasia shenzhenica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DYP57.5e-1037.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LSQ52.8e-0939.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024225 PE=4 SV=1[more]
A0A5A7PIV61.2e-0736.36Reticulon family protein OS=Striga asiatica OX=4170 GN=STAS_08888 PE=4 SV=1[more]
A0A2I0AEY03.6e-0434.58Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash018119 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013216.1MS013216.1mRNA