MS013196 (gene) Bitter gourd (TR) v1

Overview
NameMS013196
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold459: 1131714 .. 1131899 (-)
RNA-Seq ExpressionMS013196
SyntenyMS013196
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGAAAATGGAGGTGGCAAATGATTTTATCCAAGATACATGCAATAAATTTGAAGAATGGAAGGAGCTTTGTATTTCTGTGGTGGATTCTGATGTTTGCGAAGATTTGAAATCAAATATGATTGGTCTTCTCACCATATTTGTCAATCAAAGTTTATATGCCATCATTGATAATCATTCTTACCTT

mRNA sequence

TCGAAAATGGAGGTGGCAAATGATTTTATCCAAGATACATGCAATAAATTTGAAGAATGGAAGGAGCTTTGTATTTCTGTGGTGGATTCTGATGTTTGCGAAGATTTGAAATCAAATATGATTGGTCTTCTCACCATATTTGTCAATCAAAGTTTATATGCCATCATTGATAATCATTCTTACCTT

Coding sequence (CDS)

TCGAAAATGGAGGTGGCAAATGATTTTATCCAAGATACATGCAATAAATTTGAAGAATGGAAGGAGCTTTGTATTTCTGTGGTGGATTCTGATGTTTGCGAAGATTTGAAATCAAATATGATTGGTCTTCTCACCATATTTGTCAATCAAAGTTTATATGCCATCATTGATAATCATTCTTACCTT

Protein sequence

SKMEVANDFIQDTCNKFEEWKELCISVVDSDVCEDLKSNMIGLLTIFVNQSLYAIIDNHSYL
Homology
BLAST of MS013196 vs. NCBI nr
Match: KAG6599042.1 (hypothetical protein SDJN03_08820, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 2  KMEVANDFIQDTCNKFEEWKELCISVVDSDVCEDLKSNMIGLLTIFVNQSLYAIIDNHSY 61
          +MEVANDF+ DTCNK EE K+LC SV+ SD  +DLK+N+  LLTIF+NQ+L  ++D+HSY
Sbjct: 26 EMEVANDFVHDTCNKTEELKDLCNSVIGSDPRDDLKTNLTSLLTIFINQTLRVVVDDHSY 85

Query: 62 L 63
          L
Sbjct: 86 L 86

BLAST of MS013196 vs. NCBI nr
Match: KAG6599036.1 (hypothetical protein SDJN03_08814, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 4.3e-12
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 0

Query: 3  MEVANDFIQDTCNKFEEWKELCISVVDSDVCEDLKSNMIGLLTIFVNQSLYAIIDNHSYL 62
          M+  NDFIQDTCN+ E++K+LCISV+DSD  EDLK N +  L IF+N++L  IID+HSYL
Sbjct: 1  MKAPNDFIQDTCNRTEDFKDLCISVIDSDPREDLKLNSMDFLVIFINRTLQVIIDDHSYL 60

BLAST of MS013196 vs. NCBI nr
Match: KAG6585821.1 (hypothetical protein SDJN03_18554, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 8.2e-11
Identity = 32/61 (52.46%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 2  KMEVANDFIQDTCNKFEEWKELCISVVDSDVCEDLKSNMIGLLTIFVNQSLYAIIDNHSY 61
          +M+  +DF + TC++  E K+LCISV++S+ CEDLKSN+ G L IF+N++L+ +ID+HSY
Sbjct: 24 EMKAGSDFTRATCDRTSELKDLCISVINSNPCEDLKSNLTGFLAIFINETLHVVIDDHSY 83

Query: 62 L 63
          L
Sbjct: 84 L 84

BLAST of MS013196 vs. NCBI nr
Match: XP_022137307.1 (uncharacterized protein LOC111008804 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 7.7e-09
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 2  KMEVANDFIQDTCNKF-EEWKELCISVVDSDVCEDLKSNMIGLLTIFVNQSLYAIIDNHS 61
          K+ VAN F+ +TCNKF EE+ ++CI V+DSD  +DLK N+ GLL IF+N S+    DNH 
Sbjct: 6  KLSVANSFVNNTCNKFEEEFIKVCIDVIDSDPHQDLKLNLSGLLAIFINHSIDNATDNHL 65

Query: 62 YL 63
          YL
Sbjct: 66 YL 67

BLAST of MS013196 vs. NCBI nr
Match: KAG6572151.1 (putative pectinesterase/pectinesterase inhibitor 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 4   EVANDFIQDTCNKF--EEWKELCISVVDSDVCEDLKSNMIGLLTIFVNQSLYAIIDNHSY 63
           E  + F+ DTCNKF  E+  +LCI  +DSD  EDLKSN+ G+L IFVN S     DN ++
Sbjct: 334 ETRSTFVHDTCNKFQIEQLYKLCIPEIDSDPREDLKSNLTGILIIFVNHSFSNFNDNIAF 393

BLAST of MS013196 vs. ExPASy TrEMBL
Match: A0A6J1C7W5 (uncharacterized protein LOC111008804 OS=Momordica charantia OX=3673 GN=LOC111008804 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-09
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 2  KMEVANDFIQDTCNKF-EEWKELCISVVDSDVCEDLKSNMIGLLTIFVNQSLYAIIDNHS 61
          K+ VAN F+ +TCNKF EE+ ++CI V+DSD  +DLK N+ GLL IF+N S+    DNH 
Sbjct: 6  KLSVANSFVNNTCNKFEEEFIKVCIDVIDSDPHQDLKLNLSGLLAIFINHSIDNATDNHL 65

Query: 62 YL 63
          YL
Sbjct: 66 YL 67

BLAST of MS013196 vs. ExPASy TrEMBL
Match: A0A5D3BJB5 (Putative invertase inhibitor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004170 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 7  NDFIQDTCNKFEEWKELCISVVDSDVCEDLKSNMIGLLTIFVNQSLYAIIDNHSYL 63
          NDF++ TCN+  E K LC+S + S+   DLKSN+ GLL IFVNQS+    ++ S+L
Sbjct: 29 NDFVRHTCNRTHELKNLCLSQISSEPRNDLKSNLTGLLMIFVNQSISNFKNDISFL 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6599042.13.9e-1362.30hypothetical protein SDJN03_08820, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6599036.14.3e-1261.67hypothetical protein SDJN03_08814, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585821.18.2e-1152.46hypothetical protein SDJN03_18554, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022137307.17.7e-0954.84uncharacterized protein LOC111008804 [Momordica charantia][more]
KAG6572151.11.4e-0550.82putative pectinesterase/pectinesterase inhibitor 7, partial [Cucurbita argyrospe... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C7W53.7e-0954.84uncharacterized protein LOC111008804 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A5D3BJB51.1e-0550.00Putative invertase inhibitor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013196.1MS013196.1mRNA