MS013182 (gene) Bitter gourd (TR) v1

Overview


Name	MS013182
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L28-2-like
Location	scaffold459: 981993 .. 983345 (+)
RNA-Seq Expression	MS013182
Synteny	MS013182

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGGTTTCGGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTGAAGGAGTTCGGCAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGCCCAACAACTTATACAATCTCAACTCCTACAAGCATTCTGGTAAGGCGTCCTAAATCATCTTATTATTAGGGTTTTTTGTCTAAATGTGGAGCGGGATCGTAAATATGTTCTGTCGTTATTATTTGGAGGTTTTTGAATGATTGATTTGTATTGGGGAAAAGGATTAAGCAGAGGAAATTGAAATAATTAGAATGTTGCTTGCTTTGATTCTCTCAAGCTCGTTTGAAGATGGCCTAAAAGATGCTGGGTTTATTGTTTGGATGATCTGATCAGTTAGAGGTTTTCTGGATATATAATGCATTCTGGATTTGGGGGGAGGGGCCAGCAAACTGATGTATATAGATTCATGTGAATTATTTCAACTACCATCCCCGTTTCTTCAGCTTGATTACTTGTTTTTGGCTGTGGATTTATTAATTATATACATGAACGTCCGTAGGTGCACTATGAATGATCAGTTACGTTGTTGGTTTTAGTTTTACTAAATGTATTCAAATCGTTATTTTGTGCTTGGGATTACATGCTTGGCCTTTGATTAATTAGTTTCCTTTGACCAATTCTATATCCGTGTGTGCGGGAAAAAAGTATTAGAATTCAAGACTGCTTGGTTTTCCTTGGTTTGAGTAATTTTGGTTTACTTTTCTTACATATTACAATTCTAGAAACATTTAAATTTATTTTTGGAACTTTATTGGTAGTGGTAAGTGAAGTATCAGAGGGTTTTTTTATGTGAGATCGAAGAGAAAACATTGAATTAGGTTTATCTCTAGAAGTTCAATGAGATTCTTGTGTTTTAGGCCTGGCCAACAAGAAAACTGTTACAATTCAACCTGGAGGTAAAGATCAATCCATTTTGCTTGCAACAACGAAGAGCAAGAAACAGAACAAACCTGCTTCATTGCTTCATAAATCTTTGATGAAGAAGGAATTCCGTAGGATGGCAAAGGCTGTAACAAACCAGGTATTTTAAGGTTCAGGCATTTAGTATCTCATTTTTAGCTTCCCCTGGTCAACTACACTTGTGACACATACTCCCGTTTAGCAAAGTATTACCCCTTAATTCTTTCGAGTATTTTATACTGTTGAAATATCGACGTTAACCCCCCTCCGGGATGCAGGTGGCCGATAACTACTACAGGCCAGACCTGAAGAAGGCTGCCCTAGCAAGATTGAGCGCTGTGAACAGAAGCCTTAAGGTTGCTAAGTCTGGGGTCAAGAAGAGGAACAGGCAAGCGTTGAGGAAG

mRNA sequence

ATGGCGGCGGTTTCGGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTGAAGGAGTTCGGCAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGCCCAACAACTTATACAATCTCAACTCCTACAAGCATTCTGGCCTGGCCAACAAGAAAACTGTTACAATTCAACCTGGAGGTAAAGATCAATCCATTTTGCTTGCAACAACGAAGAGCAAGAAACAGAACAAACCTGCTTCATTGCTTCATAAATCTTTGATGAAGAAGGAATTCCGTAGGATGGCAAAGGCTGTAACAAACCAGGTGGCCGATAACTACTACAGGCCAGACCTGAAGAAGGCTGCCCTAGCAAGATTGAGCGCTGTGAACAGAAGCCTTAAGGTTGCTAAGTCTGGGGTCAAGAAGAGGAACAGGCAAGCGTTGAGGAAG

Coding sequence (CDS)

ATGGCGGCGGTTTCGGGACAACTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTGAAGGAGTTCGGCAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGCCCAACAACTTATACAATCTCAACTCCTACAAGCATTCTGGCCTGGCCAACAAGAAAACTGTTACAATTCAACCTGGAGGTAAAGATCAATCCATTTTGCTTGCAACAACGAAGAGCAAGAAACAGAACAAACCTGCTTCATTGCTTCATAAATCTTTGATGAAGAAGGAATTCCGTAGGATGGCAAAGGCTGTAACAAACCAGGTGGCCGATAACTACTACAGGCCAGACCTGAAGAAGGCTGCCCTAGCAAGATTGAGCGCTGTGAACAGAAGCCTTAAGGTTGCTAAGTCTGGGGTCAAGAAGAGGAACAGGCAAGCGTTGAGGAAG

Protein sequence

MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQPGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQALRK

Homology

[Close]

BLAST of MS013182 vs. NCBI nr
Match: XP_022148100.1 (60S ribosomal protein L28-2-like [Momordica charantia])

HSP 1 Score: 276.9 bits (707), Expect = 9.7e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALRK 147
           RLSAVNRSLKVAKSGVKKRNRQALRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALRK 146

[Close]

BLAST of MS013182 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 271.2 bits (692), Expect = 5.3e-69
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALR 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALK 145

[Close]

BLAST of MS013182 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida])

HSP 1 Score: 268.1 bits (684), Expect = 4.5e-68
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALR 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALK 145

[Close]

BLAST of MS013182 vs. NCBI nr
Match: XP_004146830.1 (60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein Csa_000918 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.2e-67
Identity = 140/145 (96.55%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+S LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALR 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALK 145

[Close]

BLAST of MS013182 vs. NCBI nr
Match: XP_022956223.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022980747.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023529098.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7018296.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.6 bits (675), Expect = 5.0e-67
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVSGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQS+LLATTKSKKQNKP+SLLHKSL+KKEF +MAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALR 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALK 145

[Close]

BLAST of MS013182 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 8.6e-54
Identity = 107/143 (74.83%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA V GQLIWEIVKRNN FLVK+FGRG A VQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of MS013182 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-52
Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA V GQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of MS013182 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 3   AVSGQLIWEIVKRNNSFLVK--EFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 62
           +VS  LIW++++ NN FLVK  EFG    G+QF++EP N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 63  PGGKDQSILLATTKSKKQNKPASLLHKSLM-KKEFRRMAKAVTNQVADNYYRPDLKKAAL 122
                  +L+  T  K   KPA L  K ++     R+  K++  ++    YR DL K ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 123 ARLSAVNRSLKVAKS 135
           AR SA+  S +  K+
Sbjct: 122 ARASAILSSQRPKKT 132

[Close]

BLAST of MS013182 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.7e-14
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 0


Query: 4   VSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQPGG 63
           +S  L W I++ NN+FLVK   +      FSKEPNN+ NLNSY+++GL  KK V +    
Sbjct: 1   MSSHLNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENP 60

Query: 64  KDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLS 123
             +   +   K+K  NKPA    +   K   RR    V   +  N+YR DL KA L R S
Sbjct: 61  DRKGFTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRAS 120

Query: 124 AVNRSLKVAKSGVKKRNRQALRK 147
           A+ RS +  K+   K+ + A+ K
Sbjct: 121 AILRSQRPIKA---KKPKAAVAK 137

[Close]

BLAST of MS013182 vs. ExPASy Swiss-Prot
Match: Q3T0L7 (60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-13
Identity = 42/127 (33.07%), Postives = 73/127 (57.48%), Query Frame = 0


Query: 4   VSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQPGG 63
           +S  L W +V+  +SFL+K   +      +S EPNNL   NS++++GL ++KTV ++P  
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAA 60

Query: 64  KDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALARLS 123
             + +++   +   Q KPA+   ++ + K  R    ++ + +  N YRPDL+ AA+ R S
Sbjct: 61  DGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRAS 120

Query: 124 AVNRSLK 131
           A+ RS K
Sbjct: 121 AILRSQK 122

[Close]

BLAST of MS013182 vs. ExPASy TrEMBL
Match: A0A6J1D200 (60S ribosomal protein L28-2-like OS=Momordica charantia OX=3673 GN=LOC111016861 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALRK 147
           RLSAVNRSLKVAKSGVKKRNRQALRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALRK 146

[Close]

BLAST of MS013182 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.6e-69
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALR 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALK 145

[Close]

BLAST of MS013182 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.6e-69
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+SLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALR 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALK 145

[Close]

BLAST of MS013182 vs. ExPASy TrEMBL
Match: A0A0A0LIG3 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849920 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 140/145 (96.55%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQSILLATTKSKKQNKP+S LHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALR 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALK 145

[Close]

BLAST of MS013182 vs. ExPASy TrEMBL
Match: A0A6J1IS47 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111480021 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.4e-67
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVSGQL+WEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
           PGGKDQS+LLATTKSKKQNKP+SLLHKSL+KKEF +MAKAVTNQVADNYYRPDLKKAALA
Sbjct: 61  PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALR 146
           RLSAVNRSLKVAKSGVKKRNRQAL+
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALK 145

[Close]

BLAST of MS013182 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 211.1 bits (536), Expect = 6.1e-55
Identity = 107/143 (74.83%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA V GQLIWEIVKRNN FLVK+FGRG A VQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of MS013182 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 211.1 bits (536), Expect = 6.1e-55
Identity = 107/143 (74.83%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA V GQLIWEIVKRNN FLVK+FGRG A VQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
             GKDQ ++L TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of MS013182 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 207.2 bits (526), Expect = 8.8e-54
Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA V GQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of MS013182 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 207.2 bits (526), Expect = 8.8e-54
Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA V GQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of MS013182 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 207.2 bits (526), Expect = 8.8e-54
Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVSGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60
           MA V GQLIWEIVK NN FLVK+FGRG + VQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILLATTKSKKQNKPASLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120
              KDQ+++LATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of MS013182 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148100.1	9.7e-71	100.00	60S ribosomal protein L28-2-like [Momordica charantia]	[more]
XP_008447584.1	5.3e-69	97.93	PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDI...	[more]
XP_038886678.1	4.5e-68	97.24	60S ribosomal protein L28-2-like [Benincasa hispida]	[more]
XP_004146830.1	2.2e-67	96.55	60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein C...	[more]
XP_022956223.1	5.0e-67	94.48	60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022980747.1 60S riboso...	[more]

BLAST of MS013182 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	8.6e-54	74.83	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	1.2e-52	74.13	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
O14069	3.0e-14	36.30	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
Q962T2	8.7e-14	37.76	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
Q3T0L7	2.5e-13	33.07	60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3	[more]

BLAST of MS013182 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D200	4.7e-71	100.00	60S ribosomal protein L28-2-like OS=Momordica charantia OX=3673 GN=LOC111016861 ...	[more]
A0A1S3BIE3	2.6e-69	97.93	60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV...	[more]
A0A5D3BXS0	2.6e-69	97.93	60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0LIG3	1.1e-67	96.55	Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849...	[more]
A0A6J1IS47	2.4e-67	94.48	60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111480021 PE=...	[more]

BLAST of MS013182 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	6.1e-55	74.83	Ribosomal L28e protein family	[more]
AT4G29410.2	6.1e-55	74.83	Ribosomal L28e protein family	[more]
AT2G19730.1	8.8e-54	74.13	Ribosomal L28e protein family	[more]
AT2G19730.2	8.8e-54	74.13	Ribosomal L28e protein family	[more]
AT2G19730.3	8.8e-54	74.13	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 3.3E-36 score: 124.5
None	No IPR available	GENE3D	3.30.390.110		coord: 5..133 e-value: 3.5E-46 score: 158.7
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..145
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013182.1	MS013182.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome