MS013180 (gene) Bitter gourd (TR) v1

Overview


Name	MS013180
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ESCRT-related protein CHMP1B-like
Location	scaffold459: 968662 .. 969270 (-)
RNA-Seq Expression	MS013180
Synteny	MS013180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAATACGGAGAAATTGTTGAATCAGATCATGGAATTGAAATTTACGGCGAAATCACTGCAACGACAAGCGAGGAAGTGCGAGAAGGAGGAGAAGTCCGAGAAGCTTAAGATCAAGAAGGCTATGGAGAAGGGGAACATGGACGGGGCACGAATTTACGCTGAGAACGCGATCCGTAAGCGTACGGAGCAGATGAACTATCTCCGACTCGCTTCGCGGCTCGATGCCGTTGTGGCTCGTCTCGACACGCAGGCGAAGATGTCCACCATTAACAAGTCTATGGGCTCGATCGTCAAGTCCTTGGAAAGTACTTTGGCGACTGGTAATCTGCAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAGTTTGTGAACATGGAGGTCCAGGCTGAGTTTATGGAGAATGCGATGGCGGGTTCAACTTCTCTGTCCACTCCGGAGGGAGAGGTCAACACTTTGATGCAACAGGTAGCCGACGACTATGGATTGGAGGTTTCTGTGGGTCTCCCACAGCCAGCAGCTCACGCTGTGCCGACCAGGGAGACTGAGAAAATCGACGAGGAGGACTTATCGAGGCGGCTTGCTGAGCTTAAGGCCAGAGGG

mRNA sequence

ATGGGTAATACGGAGAAATTGTTGAATCAGATCATGGAATTGAAATTTACGGCGAAATCACTGCAACGACAAGCGAGGAAGTGCGAGAAGGAGGAGAAGTCCGAGAAGCTTAAGATCAAGAAGGCTATGGAGAAGGGGAACATGGACGGGGCACGAATTTACGCTGAGAACGCGATCCGTAAGCGTACGGAGCAGATGAACTATCTCCGACTCGCTTCGCGGCTCGATGCCGTTGTGGCTCGTCTCGACACGCAGGCGAAGATGTCCACCATTAACAAGTCTATGGGCTCGATCGTCAAGTCCTTGGAAAGTACTTTGGCGACTGGTAATCTGCAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAGTTTGTGAACATGGAGGTCCAGGCTGAGTTTATGGAGAATGCGATGGCGGGTTCAACTTCTCTGTCCACTCCGGAGGGAGAGGTCAACACTTTGATGCAACAGGTAGCCGACGACTATGGATTGGAGGTTTCTGTGGGTCTCCCACAGCCAGCAGCTCACGCTGTGCCGACCAGGGAGACTGAGAAAATCGACGAGGAGGACTTATCGAGGCGGCTTGCTGAGCTTAAGGCCAGAGGG

Coding sequence (CDS)

ATGGGTAATACGGAGAAATTGTTGAATCAGATCATGGAATTGAAATTTACGGCGAAATCACTGCAACGACAAGCGAGGAAGTGCGAGAAGGAGGAGAAGTCCGAGAAGCTTAAGATCAAGAAGGCTATGGAGAAGGGGAACATGGACGGGGCACGAATTTACGCTGAGAACGCGATCCGTAAGCGTACGGAGCAGATGAACTATCTCCGACTCGCTTCGCGGCTCGATGCCGTTGTGGCTCGTCTCGACACGCAGGCGAAGATGTCCACCATTAACAAGTCTATGGGCTCGATCGTCAAGTCCTTGGAAAGTACTTTGGCGACTGGTAATCTGCAGAAGATGTCGGAGACCATGGATCAATTTGAGAAGCAGTTTGTGAACATGGAGGTCCAGGCTGAGTTTATGGAGAATGCGATGGCGGGTTCAACTTCTCTGTCCACTCCGGAGGGAGAGGTCAACACTTTGATGCAACAGGTAGCCGACGACTATGGATTGGAGGTTTCTGTGGGTCTCCCACAGCCAGCAGCTCACGCTGTGCCGACCAGGGAGACTGAGAAAATCGACGAGGAGGACTTATCGAGGCGGCTTGCTGAGCTTAAGGCCAGAGGG

Protein sequence

MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVPTRETEKIDEEDLSRRLAELKARG

Homology

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BLAST of MS013180 vs. NCBI nr
Match: XP_022148096.1 (ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia])

HSP 1 Score: 372.1 bits (954), Expect = 3.1e-99
Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
           TRETEKIDE+DLSRRLAELKARG
Sbjct: 181 TRETEKIDEDDLSRRLAELKARG 203

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BLAST of MS013180 vs. NCBI nr
Match: XP_004146833.1 (ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-related protein CHMP1B-like [Cucumis melo] >KAA0061110.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa])

HSP 1 Score: 367.5 bits (942), Expect = 7.6e-98
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPAAHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
            RETEKIDE+DLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of MS013180 vs. NCBI nr
Match: KAE8651298.1 (hypothetical protein Csa_002473 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 7.6e-98
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPAAHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
            RETEKIDE+DLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of MS013180 vs. NCBI nr
Match: XP_022949550.1 (ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-related protein CHMP1B-like [Cucurbita maxima] >XP_023523585.1 ESCRT-related protein CHMP1B-like [Cucurbita pepo subsp. pepo] >KAG6606731.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036449.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366.7 bits (940), Expect = 1.3e-97
Identity = 198/203 (97.54%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
           TRETEKIDE+DL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of MS013180 vs. NCBI nr
Match: XP_038878614.1 (ESCRT-related protein CHMP1B-like [Benincasa hispida])

HSP 1 Score: 365.9 bits (938), Expect = 2.2e-97
Identity = 198/203 (97.54%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLE+TLATGNLQKMSETMD+
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLETTLATGNLQKMSETMDR 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPAAHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
            RETEKIDE+DLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of MS013180 vs. ExPASy Swiss-Prot
Match: Q9SSM4 (ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 2.9e-92
Identity = 179/203 (88.18%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI +LKFT+KSLQRQ+RKCEKEEK+EKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRLASRLDAVVARLDTQAKM+TI KSM +IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
           T+  EK+DE+DLSRRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of MS013180 vs. ExPASy Swiss-Prot
Match: Q8LE58 (ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 5.5e-91
Identity = 176/203 (86.70%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI ELKFT+KSLQRQARKCEKEE+SEKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM+TI KSM +IVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
           T+  EK++E+DL+RRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of MS013180 vs. ExPASy Swiss-Prot
Match: Q84VG1 (ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 5.9e-85
Identity = 173/205 (84.39%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+ QI +LKFT+KSLQRQARKCEKEEK +KLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNPEKLMTQIFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTE MNYLRLASRLDAVVARLDTQAKM  I KSM +IVKSL+S LATGNLQKMSETMD 
Sbjct: 61  KRTEHMNYLRLASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDN 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FE+QFVNMEVQAEFME AMAGSTSLSTPE EVN+LMQQVADDYGLEVSVGLPQ AAHA+P
Sbjct: 121 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQAAAHAIP 180

Query: 181 -TRETEK-IDEEDLSRRLAELKARG 204
             +E EK +DE+DLSRRLAELKARG
Sbjct: 181 AAKEKEKAVDEDDLSRRLAELKARG 205

[Close]

BLAST of MS013180 vs. ExPASy Swiss-Prot
Match: Q5E994 (Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-43
Identity = 96/200 (48.00%), Postives = 148/200 (74.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           M N EK    +  LKF AK L R A+KC+KEEK+EK KIKKA++KGNM+ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           ++ + +N+LR+++R+DAV AR+ T   M  + KSM  +VKS+++TL T NL+K+S  MD+
Sbjct: 61  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FE QF  ++VQ + ME+ M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct: 121 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSVG 180

Query: 181 TRETEKIDEEDLSRRLAELK 201
           T      ++++LS+RLA L+
Sbjct: 181 T-SVASAEQDELSQRLARLR 196

[Close]

BLAST of MS013180 vs. ExPASy Swiss-Prot
Match: Q7LBR1 (Charged multivesicular body protein 1b OS=Homo sapiens OX=9606 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.3e-43
Identity = 95/200 (47.50%), Postives = 147/200 (73.50%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           M N EK    +  LKF AK L R A+KC+KEEK+EK KIKKA++KGNM+ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           ++ + +N+LR+++R+DAV AR+ T   M  + KSM  +VKS+++TL T NL+K+S  MD+
Sbjct: 61  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FE QF  ++VQ + ME+ M+ +T+L+TP+ +V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct: 121 FEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVG 180

Query: 181 TRETEKIDEEDLSRRLAELK 201
           T      ++++LS+RLA L+
Sbjct: 181 T-SVASAEQDELSQRLARLR 196

[Close]

BLAST of MS013180 vs. ExPASy TrEMBL
Match: A0A6J1D4C5 (ESCRT-related protein CHMP1B-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016858 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.5e-99
Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
           TRETEKIDE+DLSRRLAELKARG
Sbjct: 181 TRETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of MS013180 vs. ExPASy TrEMBL
Match: A0A5A7V1A1 (ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00240 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.7e-98
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPAAHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
            RETEKIDE+DLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of MS013180 vs. ExPASy TrEMBL
Match: A0A0A0LIG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.7e-98
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPAAHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
            RETEKIDE+DLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of MS013180 vs. ExPASy TrEMBL
Match: A0A1S3BIE8 (ESCRT-related protein CHMP1B-like OS=Cucumis melo OX=3656 GN=LOC103490004 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.7e-98
Identity = 199/203 (98.03%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPAAHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
            RETEKIDE+DLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of MS013180 vs. ExPASy TrEMBL
Match: A0A6J1KC50 (ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.3e-98
Identity = 198/203 (97.54%), Postives = 202/203 (99.51%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMSTINK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
           TRETEKIDE+DL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of MS013180 vs. TAIR 10
Match: AT1G73030.1 (SNF7 family protein )

HSP 1 Score: 339.3 bits (869), Expect = 2.1e-93
Identity = 179/203 (88.18%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI +LKFT+KSLQRQ+RKCEKEEK+EKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRLASRLDAVVARLDTQAKM+TI KSM +IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
           T+  EK+DE+DLSRRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of MS013180 vs. TAIR 10
Match: AT1G17730.1 (vacuolar protein sorting 46.1 )

HSP 1 Score: 335.1 bits (858), Expect = 3.9e-92
Identity = 176/203 (86.70%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGNT+KL+NQI ELKFT+KSLQRQARKCEKEE+SEKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM+TI KSM +IVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180
           FEKQFVNMEVQAEFM+NAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 TRETEKIDEEDLSRRLAELKARG 204
           T+  EK++E+DL+RRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of MS013180 vs. TAIR 10
Match: AT5G44560.1 (SNF7 family protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.1e-05
Identity = 44/201 (21.89%), Postives = 84/201 (41.79%), Query Frame = 0


Query: 13  ELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLA 72
           E+    + ++R+    + EEK    +IKK  + GN    +I A   +R R +  N     
Sbjct: 20  EMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSR 79

Query: 73  SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQA 132
           +++  V          ++I+  M    K++ +        K ++ +  F+KQ   +++  
Sbjct: 80  AQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTI 139

Query: 133 EFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQ-------------PAAHAV 192
           E M  A+  +      E E   L  QV D+ G+ V+  L               PA+ A 
Sbjct: 140 EMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAA 199

Query: 193 PTRETEKIDEEDLSRRLAELK 201
             + +E  + ++L +RLA L+
Sbjct: 200 TNKNSESSEVDELEKRLASLR 220

[Close]

BLAST of MS013180 vs. TAIR 10
Match: AT5G22950.1 (SNF7 family protein )

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-05
Identity = 50/203 (24.63%), Postives = 93/203 (45.81%), Query Frame = 0


Query: 13  ELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLA 72
           +L+   ++++RQ R  +KEE++ +  IK+A ++ +M  A+  A+  +  R          
Sbjct: 24  KLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENK 83

Query: 73  SRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQK---MSETMDQFEKQFVNME 132
           ++++++   L    +   I +++G + KS E      NL K   M+ TM +F K+     
Sbjct: 84  AQMNSISMHL---GESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAG 143

Query: 133 VQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLP---------QPAAHAVP 192
           V  EF+  A+  +      E E++  + +V      E +  LP          PA  A  
Sbjct: 144 VIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKAST 203

Query: 193 TRETEKIDE-EDLSRRLAELKAR 203
           +RE E + E  D    L E++AR
Sbjct: 204 SREEEAVAEGVDDEEELEEIRAR 223

[Close]

BLAST of MS013180 vs. TAIR 10
Match: AT5G44560.2 (SNF7 family protein )

HSP 1 Score: 45.4 bits (106), Expect = 6.2e-05
Identity = 43/195 (22.05%), Postives = 82/195 (42.05%), Query Frame = 0


Query: 19  KSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLASRLDAV 78
           + ++R+    + EEK    +IKK  + GN    +I A   +R R +  N     +++  V
Sbjct: 6   RGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGV 65

Query: 79  VARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQFEKQFVNMEVQAEFMENA 138
                     ++I+  M    K++ +        K ++ +  F+KQ   +++  E M  A
Sbjct: 66  TTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEA 125

Query: 139 MAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQ-------------PAAHAVPTRETE 198
           +  +      E E   L  QV D+ G+ V+  L               PA+ A   + +E
Sbjct: 126 IDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSE 185

Query: 199 KIDEEDLSRRLAELK 201
             + ++L +RLA L+
Sbjct: 186 SSEVDELEKRLASLR 200

The following BLAST results are available for this feature:

BLAST of MS013180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148096.1	3.1e-99	99.51	ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia]	[more]
XP_004146833.1	7.6e-98	98.03	ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-...	[more]
KAE8651298.1	7.6e-98	98.03	hypothetical protein Csa_002473 [Cucumis sativus]	[more]
XP_022949550.1	1.3e-97	97.54	ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-rel...	[more]
XP_038878614.1	2.2e-97	97.54	ESCRT-related protein CHMP1B-like [Benincasa hispida]	[more]

BLAST of MS013180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSM4	2.9e-92	88.18	ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1	[more]
Q8LE58	5.5e-91	86.70	ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1	[more]
Q84VG1	5.9e-85	84.39	ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE...	[more]
Q5E994	1.5e-43	48.00	Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1	[more]
Q7LBR1	4.3e-43	47.50	Charged multivesicular body protein 1b OS=Homo sapiens OX=9606 GN=CHMP1B PE=1 SV...	[more]

BLAST of MS013180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4C5	1.5e-99	99.51	ESCRT-related protein CHMP1B-like isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5A7V1A1	3.7e-98	98.03	ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0LIG8	3.7e-98	98.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1	[more]
A0A1S3BIE8	3.7e-98	98.03	ESCRT-related protein CHMP1B-like OS=Cucumis melo OX=3656 GN=LOC103490004 PE=4 S...	[more]
A0A6J1KC50	6.3e-98	97.54	ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE...	[more]

BLAST of MS013180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73030.1	2.1e-93	88.18	SNF7 family protein	[more]
AT1G17730.1	3.9e-92	86.70	vacuolar protein sorting 46.1	[more]
AT5G44560.1	2.1e-05	21.89	SNF7 family protein	[more]
AT5G22950.1	4.7e-05	24.63	SNF7 family protein	[more]
AT5G44560.2	6.2e-05	22.05	SNF7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..45
None	No IPR available	COILS	Coil	Coil	coord: 111..138
None	No IPR available	COILS	Coil	Coil	coord: 182..202
None	No IPR available	GENE3D	6.10.140.1230		coord: 3..173 e-value: 4.3E-39 score: 136.2
None	No IPR available	PANTHER	PTHR10476:SF57	ESCRT-RELATED PROTEIN CHMP1A-RELATED	coord: 5..203
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 5..203
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 11..173 e-value: 4.1E-12 score: 46.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013180.1	MS013180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport