MS013131 (gene) Bitter gourd (TR) v1

Overview


Name	MS013131
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	photosystem I reaction center subunit VI, chloroplastic-like
Location	scaffold459: 418694 .. 419540 (-)
RNA-Seq Expression	MS013131
Synteny	MS013131

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTAGCAACCTTAGCTGCCGTCCAGCCGGTCGCCGTAAAGGGTCTCGCCGGAAGCTCCATTGCCGGAACCAGGCTCCCCCTCAAGCCCTCTCGCCAGAGCTTCAGACCCAAAAACTTCAGGTGCCAAAATCTTCTCTTTTTTTGCCTTTTTTTTTTGGTTGTCTTATTTTGCTCCGAAATTATCTGAATTTTTCTGGGTTTCTTCTTGTTTTTCTTAGGGCTGGTGCTGTGGTGGCCAAGTACGGAGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGGTTTGTCTTTGCTTTAATGAATAACGAAAAAGGGCCAGAGCAGAACAGAACATAACAGAGGAATTGTTGTTTCTTTCTTTTACTTTTGAGTGATCTTGATGTGTTTGGTAGTGCTTTTTAAATCAGCAATTTTAGTATAAGTACTAATGTTTAATGACAAATCACTTTAAAAGTACTTATCTTCTCGTGCCACTATTACTTCAATCCAAATATAATGATTCTAACAGATTGTGAAGATTTAGAGTTCAGTTATATCTCTGTTGCTGCTTTGGTTGGATTGAACTTGCTATTGACTTATTTTGGTACATTTTTTCCAGAGCAAATTCTTTGAAACTTTTGCTGCTCCATTCACCAAGAGAGGATTATTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCCACTCTTGCCTATTTCAGTGCCACAGCCCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTCCCACCAAAACTCGGGCCGCGTGGCAAGATC

mRNA sequence

ATGGCTTCCTTAGCAACCTTAGCTGCCGTCCAGCCGGTCGCCGTAAAGGGTCTCGCCGGAAGCTCCATTGCCGGAACCAGGCTCCCCCTCAAGCCCTCTCGCCAGAGCTTCAGACCCAAAAACTTCAGGGCTGGTGCTGTGGTGGCCAAGTACGGAGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAAACTTTTGCTGCTCCATTCACCAAGAGAGGATTATTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCCACTCTTGCCTATTTCAGTGCCACAGCCCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTCCCACCAAAACTCGGGCCGCGTGGCAAGATC

Coding sequence (CDS)

ATGGCTTCCTTAGCAACCTTAGCTGCCGTCCAGCCGGTCGCCGTAAAGGGTCTCGCCGGAAGCTCCATTGCCGGAACCAGGCTCCCCCTCAAGCCCTCTCGCCAGAGCTTCAGACCCAAAAACTTCAGGGCTGGTGCTGTGGTGGCCAAGTACGGAGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGCAACACCACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAAACTTTTGCTGCTCCATTCACCAAGAGAGGATTATTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCCACTCTTGCCTATTTCAGTGCCACAGCCCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTCCCACCAAAACTCGGGCCGCGTGGCAAGATC

Protein sequence

MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Homology

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BLAST of MS013131 vs. NCBI nr
Match: XP_022153665.1 (photosystem I reaction center subunit VI, chloroplastic-like [Momordica charantia])

HSP 1 Score: 285.4 bits (729), Expect = 2.7e-73
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

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BLAST of MS013131 vs. NCBI nr
Match: XP_011651500.1 (photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus] >KGN58074.1 hypothetical protein Csa_023410 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 3.6e-70
Identity = 136/144 (94.44%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPV VKGL GSS+AG +LPL+PSRQ+FRPKNF+AGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of MS013131 vs. NCBI nr
Match: XP_022955723.1 (photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata] >XP_022979288.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 275.0 bits (702), Expect = 3.6e-70
Identity = 136/144 (94.44%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPV VKGL GSS+AGT+LPL+PSRQSFRPK+F+AGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of MS013131 vs. NCBI nr
Match: KAG7018324.1 (Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.9 bits (699), Expect = 8.1e-70
Identity = 135/144 (93.75%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPV VKGL GSS+AGT+LPL+P+RQSFRPK+F+AGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of MS013131 vs. NCBI nr
Match: KAG6581890.1 (Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.9 bits (699), Expect = 8.1e-70
Identity = 135/144 (93.75%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPV VKGL GSS+AGT+LPL+P+RQSFRPK+F+AGAVVAKYGDKSVYFDL
Sbjct: 468 MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 527

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 528 EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 587

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 588 APDDVLPIKKGPQLPPKLGPRGKI 611

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BLAST of MS013131 vs. ExPASy Swiss-Prot
Match: P22179 (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAH PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.0e-62
Identity = 118/144 (81.94%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP  +KGLAGSSIAGT+L +KP+RQSF+  N R+GA+VAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA 
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           AP DVLPI +GPQ PPKLGPRGKI
Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144

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BLAST of MS013131 vs. ExPASy Swiss-Prot
Match: Q9SUI6 (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.5e-60
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP  AVKGL GSS+AG +L +KPSRQSF+ K+ RAGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of MS013131 vs. ExPASy Swiss-Prot
Match: O04006 (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris OX=3711 GN=PSAH PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.6e-60
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MASLATLAAVQPV-AVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP  AVKGL GSS+ G +L +KPSRQSF+PK+ RAGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           ++  DVLPIK+GPQ  PKLGPRGK+
Sbjct: 121 SSTGDVLPIKRGPQEKPKLGPRGKL 145

[Close]

BLAST of MS013131 vs. ExPASy Swiss-Prot
Match: Q9SUI7 (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-59
Identity = 114/145 (78.62%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFD 60
           MASLAT+AAV+P  A+KGL GSS+AG +L +KPSR SF+PK+ RA  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of MS013131 vs. ExPASy Swiss-Prot
Match: A2Y7D9 (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=PSAH PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.9e-53
Identity = 108/142 (76.06%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 4   LATLAAVQPVAVKGLAGSSIAGTRLPLKPS-RQSFRPKNFRAGAVVAKYGDKSVYFDLED 63
           +A+L AVQPVAVKGLAGSSI+G +L ++PS R   R       AVVAKYG+KSVYFDLED
Sbjct: 1   MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLED 60

Query: 64  LGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAP 123
           +GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFLLLGGG+ +AY SA+A 
Sbjct: 61  IGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASAS 120

Query: 124 DDVLPIKKGPQLPPKLGPRGKI 145
            D+LPIKKGPQLPP  GPRGKI
Sbjct: 121 PDLLPIKKGPQLPPTPGPRGKI 142

[Close]

BLAST of MS013131 vs. ExPASy TrEMBL
Match: A0A6J1DHG2 (photosystem I reaction center subunit VI, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111021119 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of MS013131 vs. ExPASy TrEMBL
Match: A0A6J1IVS0 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479056 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.8e-70
Identity = 136/144 (94.44%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPV VKGL GSS+AGT+LPL+PSRQSFRPK+F+AGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of MS013131 vs. ExPASy TrEMBL
Match: A0A0A0LAW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483830 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.8e-70
Identity = 136/144 (94.44%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPV VKGL GSS+AG +LPL+PSRQ+FRPKNF+AGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of MS013131 vs. ExPASy TrEMBL
Match: A0A6J1GUS6 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457635 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.8e-70
Identity = 136/144 (94.44%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPV VKGL GSS+AGT+LPL+PSRQSFRPK+F+AGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of MS013131 vs. ExPASy TrEMBL
Match: A0A5D3C9C3 (Photosystem I reaction center subunit VI OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G001000 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.1e-70
Identity = 135/144 (93.75%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP  VKGL GSS+AG +LPL+PSRQSFRPKNF+AGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of MS013131 vs. TAIR 10
Match: AT1G52230.1 (photosystem I subunit H2 )

HSP 1 Score: 232.3 bits (591), Expect = 2.5e-61
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP  AVKGL GSS+AG +L +KPSRQSF+ K+ RAGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of MS013131 vs. TAIR 10
Match: AT3G16140.1 (photosystem I subunit H-1 )

HSP 1 Score: 230.3 bits (586), Expect = 9.6e-61
Identity = 114/145 (78.62%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MASLATLAAVQP-VAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFD 60
           MASLAT+AAV+P  A+KGL GSS+AG +L +KPSR SF+PK+ RA  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

The following BLAST results are available for this feature:

BLAST of MS013131 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153665.1	2.7e-73	100.00	photosystem I reaction center subunit VI, chloroplastic-like [Momordica charanti...	[more]
XP_011651500.1	3.6e-70	94.44	photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus] >KGN58...	[more]
XP_022955723.1	3.6e-70	94.44	photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata...	[more]
KAG7018324.1	8.1e-70	93.75	Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argy...	[more]
KAG6581890.1	8.1e-70	93.75	Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of MS013131 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P22179	1.0e-62	81.94	Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9SUI6	3.5e-60	80.69	Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thalian...	[more]
O04006	4.6e-60	80.69	Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris O...	[more]
Q9SUI7	1.3e-59	78.62	Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thalian...	[more]
A2Y7D9	1.9e-53	76.06	Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. i...	[more]

BLAST of MS013131 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHG2	1.3e-73	100.00	photosystem I reaction center subunit VI, chloroplastic-like OS=Momordica charan...	[more]
A0A6J1IVS0	1.8e-70	94.44	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A0A0LAW4	1.8e-70	94.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483830 PE=3 SV=1	[more]
A0A6J1GUS6	1.8e-70	94.44	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A5D3C9C3	5.1e-70	93.75	Photosystem I reaction center subunit VI OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of MS013131 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52230.1	2.5e-61	80.69	photosystem I subunit H2	[more]
AT3G16140.1	9.6e-61	78.62	photosystem I subunit H-1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004928	Photosystem I PsaH, reaction centre subunit VI	PFAM	PF03244	PSI_PsaH	coord: 7..144 e-value: 2.7E-71 score: 237.6
IPR004928	Photosystem I PsaH, reaction centre subunit VI	PANTHER	PTHR34787	PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-2, CHLOROPLASTIC	coord: 1..144
None	No IPR available	GENE3D	1.20.5.220		coord: 98..120 e-value: 2.5E-11 score: 45.1
None	No IPR available	PANTHER	PTHR34787:SF6	PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-1, CHLOROPLASTIC-LIKE	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013131.1	MS013131.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009538	photosystem I reaction center