MS013112 (gene) Bitter gourd (TR) v1

Overview


Name	MS013112
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Auxin-responsive protein
Location	scaffold459: 308128 .. 308406 (-)
RNA-Seq Expression	MS013112
Synteny	MS013112

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTGGTGGGTTGGCCACCGGTTCGCTCGTACCGGCGGAGGAACAGTTTTAGGGAGAAGGATGAATCTGAAACAACGACGAAGATGTCGTACGTGAAAGTAAGCTTGGACGGAGTGCCATTTCTTCGGAAACTTGATTTGGTAACGGTGGCGGGGTACGCCGATCTCGGCGGGGCGATGGAGAAGCTCTTTGGTTGCTCCATTGGATGCTCTAAATATACTATGACTTATGAAGATAGAGATGGAGATTGGATGTTGGTTGGGGACGTCCCTTGGAAG

mRNA sequence

CAGGTGGTGGGTTGGCCACCGGTTCGCTCGTACCGGCGGAGGAACAGTTTTAGGGAGAAGGATGAATCTGAAACAACGACGAAGATGTCGTACGTGAAAGTAAGCTTGGACGGAGTGCCATTTCTTCGGAAACTTGATTTGGTAACGGTGGCGGGGTACGCCGATCTCGGCGGGGCGATGGAGAAGCTCTTTGGTTGCTCCATTGGATGCTCTAAATATACTATGACTTATGAAGATAGAGATGGAGATTGGATGTTGGTTGGGGACGTCCCTTGGAAG

Coding sequence (CDS)

CAGGTGGTGGGTTGGCCACCGGTTCGCTCGTACCGGCGGAGGAACAGTTTTAGGGAGAAGGATGAATCTGAAACAACGACGAAGATGTCGTACGTGAAAGTAAGCTTGGACGGAGTGCCATTTCTTCGGAAACTTGATTTGGTAACGGTGGCGGGGTACGCCGATCTCGGCGGGGCGATGGAGAAGCTCTTTGGTTGCTCCATTGGATGCTCTAAATATACTATGACTTATGAAGATAGAGATGGAGATTGGATGTTGGTTGGGGACGTCCCTTGGAAG

Protein sequence

QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK

Homology

[Close]

BLAST of MS013112 vs. NCBI nr
Match: XP_022153621.1 (auxin-induced protein 22A-like [Momordica charantia])

HSP 1 Score: 198.4 bits (503), Expect = 2.8e-47
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM
Sbjct: 50  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 109

Query: 61  EKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK 94
           EKLFGCSIGCSKYT+TYEDRDGDWMLVGDVPWK
Sbjct: 110 EKLFGCSIGCSKYTITYEDRDGDWMLVGDVPWK 142

[Close]

BLAST of MS013112 vs. NCBI nr
Match: NP_001275532.1 (auxin-induced protein AUX22-like [Cucumis sativus] >KGN58114.1 hypothetical protein Csa_017439 [Cucumis sativus] >BAA85820.1 Aux/IAA protein [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-29
Identity = 70/101 (69.31%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFR---EKDESETTTKMS-----YVKVSLDGVPFLRKLDLVTVAG 60
           QVVGWPPV SYRRRNSF+   E+ ESE    M      YVKVS +G PFLRK+DL  V G
Sbjct: 61  QVVGWPPVCSYRRRNSFKGKGEQCESEEIMNMGMKKQMYVKVSFEGTPFLRKVDLGMVKG 120

Query: 61  YADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK 94
           Y DL GAMEKLFG  IGC +YT+TYEDRDGDWMLVGDVPWK
Sbjct: 121 YGDLVGAMEKLFGSPIGCYEYTVTYEDRDGDWMLVGDVPWK 161

[Close]

BLAST of MS013112 vs. NCBI nr
Match: XP_008447487.1 (PREDICTED: auxin-induced protein AUX22-like [Cucumis melo] >KAA0050762.1 auxin-induced protein AUX22-like [Cucumis melo var. makuwa] >TYK20441.1 auxin-induced protein AUX22-like [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 2.0e-29
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESET-------TTKMSYVKVSLDGVPFLRKLDLVTVAGY 60
           QVVGWPPV SYR+R+SF+ K E E+         K  YVKVS +G PFLRK+DL  V GY
Sbjct: 61  QVVGWPPVCSYRQRSSFKGKGECESEGIMNMGMKKQMYVKVSFEGTPFLRKVDLGMVKGY 120

Query: 61  ADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK 94
            DL GAMEKLFG  IGC +YT+TYEDRDGDWMLVGDVPWK
Sbjct: 121 GDLVGAMEKLFGSPIGCYEYTVTYEDRDGDWMLVGDVPWK 160

[Close]

BLAST of MS013112 vs. NCBI nr
Match: XP_038903795.1 (auxin-induced protein AUX22-like [Benincasa hispida])

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETT-------TKMSYVKVSLDGVPFLRKLDLVTVAGY 60
           QVVGWPPV SYR+RNSF+ K E + +        K  YVKVS +G PFLRK+DL  V GY
Sbjct: 57  QVVGWPPVCSYRQRNSFKGKGECDKSEGIIMGMKKQMYVKVSFEGTPFLRKVDLGMVKGY 116

Query: 61  ADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK 94
            DL  AMEKLFG SIG S+YT+TYEDRDGDWMLVGDVPWK
Sbjct: 117 GDLVRAMEKLFGSSIGGSEYTVTYEDRDGDWMLVGDVPWK 156

[Close]

BLAST of MS013112 vs. NCBI nr
Match: XP_023525675.1 (auxin-induced protein AUX22-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-28
Identity = 66/96 (68.75%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETT---TKMSYVKVSLDGVPFLRKLDLVTVAGYADLG 60
           QVVGWPPV SYRRRNSFREK+E E      K  YVKV ++G  F+RK+DL  V GY +L 
Sbjct: 46  QVVGWPPVCSYRRRNSFREKEECEGIMGGRKKMYVKVRVEGEAFVRKVDLGMVKGYGELV 105

Query: 61  GAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK 94
            AMEKLFG  IGCS+ T+TYEDRDGDWMLVGDVPWK
Sbjct: 106 DAMEKLFGTPIGCSQCTITYEDRDGDWMLVGDVPWK 141

[Close]

BLAST of MS013112 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-24
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           Q+VGWPPVRSYR+ N   +K+ESE   +  YVKVS+DG P+LRK+DL    GY++L  A+
Sbjct: 64  QIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKAL 123

Query: 61  EKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVPWK 94
           E +F  S+G          S +  TYED+DGDWML+GDVPW+
Sbjct: 124 EVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWE 165

[Close]

BLAST of MS013112 vs. ExPASy Swiss-Prot
Match: P32293 (Auxin-induced protein 22A OS=Vigna radiata var. radiata OX=3916 GN=AUX22A PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-23
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           QVVGWPPV SYR++NS  E       +KM YVKVS+DG PFLRK+DL    GY+DL  A+
Sbjct: 64  QVVGWPPVCSYRKKNSVNE------ASKM-YVKVSMDGAPFLRKMDLGMHKGYSDLAFAL 123

Query: 61  EKLFGC--------SIGCSKYTMTYEDRDGDWMLVGDVPWK 94
           EKLFGC        ++   ++   YED+DGDWMLVGDVPW+
Sbjct: 124 EKLFGCYGMVEALKNVENGEHVPIYEDKDGDWMLVGDVPWE 157

[Close]

BLAST of MS013112 vs. ExPASy Swiss-Prot
Match: O24409 (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana OX=3702 GN=IAA19 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-23
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           QVVGWPPV SYR++NS   K+ S T   + YVKVS+DGVP+LRK+DL +  GY DL  A+
Sbjct: 70  QVVGWPPVCSYRKKNSC--KEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDDLAFAL 129

Query: 61  EKLFGC-SIGCS-------KYTMTYEDRDGDWMLVGDVPW 93
           +KLFG   IG +       +Y   YED+DGDWML GDVPW
Sbjct: 130 DKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPW 167

[Close]

BLAST of MS013112 vs. ExPASy Swiss-Prot
Match: P13088 (Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-23
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           QVVGWPPV SYR++NS      +E  +KM YVKVS+DG PFLRK+DL    GY+DL  A+
Sbjct: 64  QVVGWPPVCSYRKKNSM-----NEGASKM-YVKVSMDGAPFLRKIDLGLHKGYSDLALAL 123

Query: 61  EKLFGC--------SIGCSKYTMTYEDRDGDWMLVGDVPWK 94
           +KLFGC        +   S++   YED+DGDWMLVGDVPW+
Sbjct: 124 DKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWE 158

[Close]

BLAST of MS013112 vs. ExPASy Swiss-Prot
Match: O24542 (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-22
Identity = 52/101 (51.49%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           QVVGWPP+RSY R+N+ ++K E E+     YVKVS+ G P+LRK+DL     Y +L  A+
Sbjct: 70  QVVGWPPIRSY-RKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKAL 129

Query: 61  EKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVPW 93
           E +F C  G          S+Y  TYED+DGDWMLVGDVPW
Sbjct: 130 ENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPW 169

[Close]

BLAST of MS013112 vs. ExPASy TrEMBL
Match: A0A6J1DL62 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111021082 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM
Sbjct: 50  QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 109

Query: 61  EKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK 94
           EKLFGCSIGCSKYT+TYEDRDGDWMLVGDVPWK
Sbjct: 110 EKLFGCSIGCSKYTITYEDRDGDWMLVGDVPWK 142

[Close]

BLAST of MS013112 vs. ExPASy TrEMBL
Match: Q9SSY3 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=CsIAA1 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.7e-30
Identity = 70/101 (69.31%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFR---EKDESETTTKMS-----YVKVSLDGVPFLRKLDLVTVAG 60
           QVVGWPPV SYRRRNSF+   E+ ESE    M      YVKVS +G PFLRK+DL  V G
Sbjct: 61  QVVGWPPVCSYRRRNSFKGKGEQCESEEIMNMGMKKQMYVKVSFEGTPFLRKVDLGMVKG 120

Query: 61  YADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK 94
           Y DL GAMEKLFG  IGC +YT+TYEDRDGDWMLVGDVPWK
Sbjct: 121 YGDLVGAMEKLFGSPIGCYEYTVTYEDRDGDWMLVGDVPWK 161

[Close]

BLAST of MS013112 vs. ExPASy TrEMBL
Match: A0A5D3DA37 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00040 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.8e-30
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESET-------TTKMSYVKVSLDGVPFLRKLDLVTVAGY 60
           QVVGWPPV SYR+R+SF+ K E E+         K  YVKVS +G PFLRK+DL  V GY
Sbjct: 61  QVVGWPPVCSYRQRSSFKGKGECESEGIMNMGMKKQMYVKVSFEGTPFLRKVDLGMVKGY 120

Query: 61  ADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK 94
            DL GAMEKLFG  IGC +YT+TYEDRDGDWMLVGDVPWK
Sbjct: 121 GDLVGAMEKLFGSPIGCYEYTVTYEDRDGDWMLVGDVPWK 160

[Close]

BLAST of MS013112 vs. ExPASy TrEMBL
Match: A0A1S3BHJ0 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103489924 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.8e-30
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESET-------TTKMSYVKVSLDGVPFLRKLDLVTVAGY 60
           QVVGWPPV SYR+R+SF+ K E E+         K  YVKVS +G PFLRK+DL  V GY
Sbjct: 61  QVVGWPPVCSYRQRSSFKGKGECESEGIMNMGMKKQMYVKVSFEGTPFLRKVDLGMVKGY 120

Query: 61  ADLGGAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK 94
            DL GAMEKLFG  IGC +YT+TYEDRDGDWMLVGDVPWK
Sbjct: 121 GDLVGAMEKLFGSPIGCYEYTVTYEDRDGDWMLVGDVPWK 160

[Close]

BLAST of MS013112 vs. ExPASy TrEMBL
Match: A0A6J1KCT2 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111492708 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 66/96 (68.75%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESE---TTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLG 60
           QVVGWPPV SYRRRNS REK+ESE      K  YVKV ++G  F+RK+DL  V GY +L 
Sbjct: 46  QVVGWPPVCSYRRRNSLREKEESEGIMEGRKKMYVKVRVEGEAFVRKVDLGMVKGYGELV 105

Query: 61  GAMEKLFGCSIGCSKYTMTYEDRDGDWMLVGDVPWK 94
            AMEKLFG  IGCS+ T+TYEDRDGDWMLVGDVPWK
Sbjct: 106 DAMEKLFGTPIGCSECTITYEDRDGDWMLVGDVPWK 141

[Close]

BLAST of MS013112 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 111.7 bits (278), Expect = 3.2e-25
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           Q+VGWPPVRSYR+ N   +K+ESE   +  YVKVS+DG P+LRK+DL    GY++L  A+
Sbjct: 64  QIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKAL 123

Query: 61  EKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVPWK 94
           E +F  S+G          S +  TYED+DGDWML+GDVPW+
Sbjct: 124 EVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWE 165

[Close]

BLAST of MS013112 vs. TAIR 10
Match: AT3G15540.1 (indole-3-acetic acid inducible 19 )

HSP 1 Score: 110.2 bits (274), Expect = 9.3e-25
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           QVVGWPPV SYR++NS   K+ S T   + YVKVS+DGVP+LRK+DL +  GY DL  A+
Sbjct: 70  QVVGWPPVCSYRKKNSC--KEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDDLAFAL 129

Query: 61  EKLFGC-SIGCS-------KYTMTYEDRDGDWMLVGDVPW 93
           +KLFG   IG +       +Y   YED+DGDWML GDVPW
Sbjct: 130 DKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPW 167

[Close]

BLAST of MS013112 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-23
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           Q+VGWPPVRSYR+ N   +K ESE   + +YVKVS+DG P+LRK+DL     Y +L  ++
Sbjct: 62  QIVGWPPVRSYRKNNVQTKKSESE--GQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSL 121

Query: 61  EKLFGCSIG---------CSKYTMTYEDRDGDWMLVGDVPWK 94
           E +F  S+G          S +  TYED+DGDWMLVGDVPW+
Sbjct: 122 ENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWE 161

[Close]

BLAST of MS013112 vs. TAIR 10
Match: AT1G15580.1 (indole-3-acetic acid inducible 5 )

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-23
Identity = 54/99 (54.55%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           QVVGWPPV SYRR+NS          TK SYVKVS+DG  FLRK+DL     Y DL  A+
Sbjct: 53  QVVGWPPVCSYRRKNSLER-------TKSSYVKVSVDGAAFLRKIDLEMYKCYQDLASAL 112

Query: 61  EKLFGCSIGC------SKYTMTYEDRDGDWMLVGDVPWK 94
           + LFGC I        S+    YED+DGDWML GDVPW+
Sbjct: 113 QILFGCYINFDDTLKESECVPIYEDKDGDWMLAGDVPWE 144

[Close]

BLAST of MS013112 vs. TAIR 10
Match: AT1G52830.1 (indole-3-acetic acid 6 )

HSP 1 Score: 102.1 bits (253), Expect = 2.5e-22
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 1   QVVGWPPVRSYRRRNSFREKDESETTTKMSYVKVSLDGVPFLRKLDLVTVAGYADLGGAM 60
           Q VGWPPV SYRR+     K+  E +  + YVKVS+DGVP++RK+DL +   Y +L   +
Sbjct: 70  QAVGWPPVCSYRRK-----KNNEEASKAIGYVKVSMDGVPYMRKIDLGSSNSYINLVTVL 129

Query: 61  EKLFGC-SIGCSK------YTMTYEDRDGDWMLVGDVPWK 94
           E LFGC  IG +K      Y + YED+D DWMLVGDVPW+
Sbjct: 130 ENLFGCLGIGVAKEGKKCEYIIIYEDKDRDWMLVGDVPWQ 164

The following BLAST results are available for this feature:

BLAST of MS013112 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153621.1	2.8e-47	98.92	auxin-induced protein 22A-like [Momordica charantia]	[more]
NP_001275532.1	1.2e-29	69.31	auxin-induced protein AUX22-like [Cucumis sativus] >KGN58114.1 hypothetical prot...	[more]
XP_008447487.1	2.0e-29	67.00	PREDICTED: auxin-induced protein AUX22-like [Cucumis melo] >KAA0050762.1 auxin-i...	[more]
XP_038903795.1	1.3e-28	67.00	auxin-induced protein AUX22-like [Benincasa hispida]	[more]
XP_023525675.1	2.2e-28	68.75	auxin-induced protein AUX22-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS013112 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38822	4.5e-24	51.96	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]
P32293	1.3e-23	55.45	Auxin-induced protein 22A OS=Vigna radiata var. radiata OX=3916 GN=AUX22A PE=2 S...	[more]
O24409	1.3e-23	56.00	Auxin-responsive protein IAA19 OS=Arabidopsis thaliana OX=3702 GN=IAA19 PE=1 SV=...	[more]
P13088	1.7e-23	55.45	Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1	[more]
O24542	1.1e-22	51.49	Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S...	[more]

BLAST of MS013112 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DL62	1.4e-47	98.92	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111021082 PE=3 SV=...	[more]
Q9SSY3	5.7e-30	69.31	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=CsIAA1 PE=2 SV=1	[more]
A0A5D3DA37	9.8e-30	67.00	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BHJ0	9.8e-30	67.00	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103489924 PE=3 SV=1	[more]
A0A6J1KCT2	1.4e-28	68.75	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111492708 PE=3 SV=1	[more]

BLAST of MS013112 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04240.1	3.2e-25	51.96	AUX/IAA transcriptional regulator family protein	[more]
AT3G15540.1	9.3e-25	56.00	indole-3-acetic acid inducible 19	[more]
AT5G43700.1	1.8e-23	50.98	AUX/IAA transcriptional regulator family protein	[more]
AT1G15580.1	3.9e-23	54.55	indole-3-acetic acid inducible 5	[more]
AT1G52830.1	2.5e-22	51.00	indole-3-acetic acid 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 23..93 e-value: 1.2E-22 score: 81.8
None	No IPR available	PANTHER	PTHR31734:SF87	AUXIN-RESPONSIVE PROTEIN IAA6	coord: 1..93
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 24..93
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 71..93 e-value: 1.4E-10 score: 41.5 coord: 1..68 e-value: 6.8E-20 score: 72.0
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..93
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 29..93 score: 17.979313

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013112.1	MS013112.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding