MS012983 (gene) Bitter gourd (TR) v1

Overview
NameMS012983
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranscription factor DREB1
Locationscaffold38: 1181275 .. 1181550 (+)
RNA-Seq ExpressionMS012983
SyntenyMS012983
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAGGAAGGCGGCGCGGCCTTTGATTGTCCGGGCGGCGACGTCGTGGGCTCTGGCCGCCATTTCCGGCGTGGAGAATGTGCCCAGCCAAATCCGCGATTTCTTCTTTGGTTCTCTGATTTCGGACACCCATTTTCCCCATTGTCGCATTCGGACGCCGCGATATGTGGGATGCTTGCCGTCGCTCCCGAGTTTCACCTTTTTGGAGCCCTTGATGATTTCTTTGCTGCAATTTTTGATCTCAGAAGAAGAAGAAGAAGATGAAGAAGAAGAAGAT

mRNA sequence

TTGAGGAAGGCGGCGCGGCCTTTGATTGTCCGGGCGGCGACGTCGTGGGCTCTGGCCGCCATTTCCGGCGTGGAGAATGTGCCCAGCCAAATCCGCGATTTCTTCTTTGGTTCTCTGATTTCGGACACCCATTTTCCCCATTGTCGCATTCGGACGCCGCGATATGTGGGATGCTTGCCGTCGCTCCCGAGTTTCACCTTTTTGGAGCCCTTGATGATTTCTTTGCTGCAATTTTTGATCTCAGAAGAAGAAGAAGAAGATGAAGAAGAAGAAGAT

Coding sequence (CDS)

TTGAGGAAGGCGGCGCGGCCTTTGATTGTCCGGGCGGCGACGTCGTGGGCTCTGGCCGCCATTTCCGGCGTGGAGAATGTGCCCAGCCAAATCCGCGATTTCTTCTTTGGTTCTCTGATTTCGGACACCCATTTTCCCCATTGTCGCATTCGGACGCCGCGATATGTGGGATGCTTGCCGTCGCTCCCGAGTTTCACCTTTTTGGAGCCCTTGATGATTTCTTTGCTGCAATTTTTGATCTCAGAAGAAGAAGAAGAAGATGAAGAAGAAGAAGAT

Protein sequence

LRKAARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGCLPSLPSFTFLEPLMISLLQFLISEEEEEDEEEED
Homology
BLAST of MS012983 vs. NCBI nr
Match: ACN31061.1 (unknown [Zea mays] >ACN33322.1 unknown [Zea mays])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 49/68 (72.06%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 1   LRKAARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGCLP 60
           LR AARPL+  AATSWA AAIS V NVPS +RDF  GS ISDTH PH RIRTPR VGC P
Sbjct: 143 LRCAARPLMASAATSWARAAISAVGNVPSHMRDFLRGSRISDTHLPHARIRTPRNVGCFP 202

Query: 61  SLPSFTFL 69
           SLP   FL
Sbjct: 203 SLPRGRFL 210

BLAST of MS012983 vs. NCBI nr
Match: KAB8086574.1 (hypothetical protein EE612_009938, partial [Oryza sativa] >BAS77777.1 Os02g0230875, partial [Oryza sativa Japonica Group])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 47/67 (70.15%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 4   AARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGCLPSLP 63
           A  PL   AA SWA AAISGV NVPSQ+RDFF GSLISDTHFPH RIRTPRY GCLP  P
Sbjct: 47  APAPLTPPAAASWARAAISGVGNVPSQMRDFFRGSLISDTHFPHARIRTPRYDGCLPPSP 106

Query: 64  SFTFLEP 71
                 P
Sbjct: 107 DLPLFSP 113

BLAST of MS012983 vs. NCBI nr
Match: XP_024317198.1 (uncharacterized protein LOC112271682 [Brachypodium distachyon])

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 45/63 (71.43%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 5   ARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGCLPSLPS 64
           A PL+  AA SWA AA+S V  VPSQ+RDFF GS ISDTHFPH RIRTPRYVGC PSL  
Sbjct: 106 AGPLMASAAASWARAAMSAVGKVPSQMRDFFRGSRISDTHFPHARIRTPRYVGCFPSLLR 165

Query: 65  FTF 68
           F F
Sbjct: 166 FRF 168

BLAST of MS012983 vs. NCBI nr
Match: BAS98207.1 (Os06g0553550 [Oryza sativa Japonica Group])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 48/70 (68.57%), Postives = 49/70 (70.00%), Query Frame = 0

Query: 1   LRKAARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGCLP 60
           L  AA PL   AA S A AAISGV NVPSQ+RDF  GSLISDTHFPH RIRTPRYVGCLP
Sbjct: 84  LSTAAGPLTTSAAASCARAAISGVGNVPSQMRDFLRGSLISDTHFPHARIRTPRYVGCLP 143

Query: 61  SLPSFTFLEP 71
             P      P
Sbjct: 144 PPPPLPRFSP 153

BLAST of MS012983 vs. NCBI nr
Match: CAN76868.1 (hypothetical protein VITISV_012310 [Vitis vinifera])

HSP 1 Score: 85.1 bits (209), Expect = 3.4e-13
Identity = 51/89 (57.30%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 1   LRKAARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGCLP 60
           LR A  PL+++AATSWA AAISGVE VPS IRDF  GS ISDTH P  RIRTP Y GCL 
Sbjct: 77  LRMAELPLMLKAATSWARAAISGVEKVPSHIRDFLRGSRISDTHLPQVRIRTPLYTGCL- 136

Query: 61  SLPSFTFLEPLMISLLQFLISEEEEEDEE 90
                  L  L +    F I +E+ EDEE
Sbjct: 137 -------LLSLPLLAGGFCIXDEDGEDEE 157

BLAST of MS012983 vs. ExPASy TrEMBL
Match: A0A0E0EGR0 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.0e-18
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1   LRKAARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGCLP 60
           LR AARPL+  AATSWA AA+S V NVPSQ+RDFF GS ISDTHFPH RIRTPRY GC P
Sbjct: 98  LRCAARPLMASAATSWARAAMSAVGNVPSQMRDFFRGSRISDTHFPHARIRTPRYTGCFP 157

Query: 61  SLPSF 66
           SL  F
Sbjct: 158 SLLRF 162

BLAST of MS012983 vs. ExPASy TrEMBL
Match: C0PA66 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.5e-17
Identity = 49/68 (72.06%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 1   LRKAARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGCLP 60
           LR AARPL+  AATSWA AAIS V NVPS +RDF  GS ISDTH PH RIRTPR VGC P
Sbjct: 143 LRCAARPLMASAATSWARAAISAVGNVPSHMRDFLRGSRISDTHLPHARIRTPRNVGCFP 202

Query: 61  SLPSFTFL 69
           SLP   FL
Sbjct: 203 SLPRGRFL 210

BLAST of MS012983 vs. ExPASy TrEMBL
Match: A0A0N7KEZ3 (Os02g0230875 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0230875 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.4e-17
Identity = 47/67 (70.15%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 4   AARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGCLPSLP 63
           A  PL   AA SWA AAISGV NVPSQ+RDFF GSLISDTHFPH RIRTPRY GCLP  P
Sbjct: 47  APAPLTPPAAASWARAAISGVGNVPSQMRDFFRGSLISDTHFPHARIRTPRYDGCLPPSP 106

Query: 64  SFTFLEP 71
                 P
Sbjct: 107 DLPLFSP 113

BLAST of MS012983 vs. ExPASy TrEMBL
Match: A0A0P0WXR1 (Os06g0553550 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0553550 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 48/70 (68.57%), Postives = 49/70 (70.00%), Query Frame = 0

Query: 1   LRKAARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGCLP 60
           L  AA PL   AA S A AAISGV NVPSQ+RDF  GSLISDTHFPH RIRTPRYVGCLP
Sbjct: 84  LSTAAGPLTTSAAASCARAAISGVGNVPSQMRDFLRGSLISDTHFPHARIRTPRYVGCLP 143

Query: 61  SLPSFTFLEP 71
             P      P
Sbjct: 144 PPPPLPRFSP 153

BLAST of MS012983 vs. ExPASy TrEMBL
Match: A0A7C9CP05 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 47/68 (69.12%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 1  LRKAARPLIVRAATSWALAAISGVENVPSQIRDFFFGSLISDTHFPHCRIRTPRYVGC-L 60
          LR A  PL++ AATSWA AAISG   VPS IRDFF GS ISDTHFPH  IRTPRY GC L
Sbjct: 30 LRIAESPLMLNAATSWARAAISGFGKVPSHIRDFFLGSRISDTHFPHALIRTPRYTGCLL 89

Query: 61 PSLPSFTF 68
           SL  F F
Sbjct: 90 LSLTRFAF 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ACN31061.11.1e-1672.06unknown [Zea mays] >ACN33322.1 unknown [Zea mays][more]
KAB8086574.11.9e-1670.15hypothetical protein EE612_009938, partial [Oryza sativa] >BAS77777.1 Os02g02308... [more]
XP_024317198.11.6e-1571.43uncharacterized protein LOC112271682 [Brachypodium distachyon][more]
BAS98207.12.1e-1568.57Os06g0553550 [Oryza sativa Japonica Group][more]
CAN76868.13.4e-1357.30hypothetical protein VITISV_012310 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0E0EGR05.0e-1875.38Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
C0PA665.5e-1772.06Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
A0A0N7KEZ39.4e-1770.15Os02g0230875 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os02... [more]
A0A0P0WXR11.0e-1568.57Os06g0553550 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0553550 PE... [more]
A0A7C9CP056.7e-1569.12Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012983.1MS012983.1mRNA