MS012963 (gene) Bitter gourd (TR) v1

Overview


Name	MS012963
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Auxin-responsive protein
Location	scaffold38: 964006 .. 964281 (+)
RNA-Seq Expression	MS012963
Synteny	MS012963

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAGGATGCATCAGTGGTGGTTCCGCTGGTGATGGTGGTGCTGGAGGGGCGGGCGATCTGCCGCTGGGTCAGCCCCCACAAACATGCAAGCTACGATCGAGAGCCCGGCAAAGAGGCCCTTGGAGGGATGTTCGTTCAGGAGGAAGACAGCGGCGGAGAGTCCGGCTCCGGCGAGCAGCGTCTTGACCTGTCAAACTCGGTCTGGGTCCTTATGAAGACATTGAAAAACGATCTTCTTCTTGCTGGTGACAACCCAAATCAGAAAGAAAAAAAT

mRNA sequence

AAGGAGGATGCATCAGTGGTGGTTCCGCTGGTGATGGTGGTGCTGGAGGGGCGGGCGATCTGCCGCTGGGTCAGCCCCCACAAACATGCAAGCTACGATCGAGAGCCCGGCAAAGAGGCCCTTGGAGGGATGTTCGTTCAGGAGGAAGACAGCGGCGGAGAGTCCGGCTCCGGCGAGCAGCGTCTTGACCTGTCAAACTCGGTCTGGGTCCTTATGAAGACATTGAAAAACGATCTTCTTCTTGCTGGTGACAACCCAAATCAGAAAGAAAAAAAT

Coding sequence (CDS)

AAGGAGGATGCATCAGTGGTGGTTCCGCTGGTGATGGTGGTGCTGGAGGGGCGGGCGATCTGCCGCTGGGTCAGCCCCCACAAACATGCAAGCTACGATCGAGAGCCCGGCAAAGAGGCCCTTGGAGGGATGTTCGTTCAGGAGGAAGACAGCGGCGGAGAGTCCGGCTCCGGCGAGCAGCGTCTTGACCTGTCAAACTCGGTCTGGGTCCTTATGAAGACATTGAAAAACGATCTTCTTCTTGCTGGTGACAACCCAAATCAGAAAGAAAAAAAT

Protein sequence

KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESGSGEQRLDLSNSVWVLMKTLKNDLLLAGDNPNQKEKN

Homology

[Close]

BLAST of MS012963 vs. NCBI nr
Match: XP_022153356.1 (auxin-responsive protein IAA33 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 9.6e-16
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1   KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEED-SGGESGSGE 60
           +ED S V+P V VVLEGRAIC+ +S HKHASY  E   +AL GMFV E+D  GG+SGSGE
Sbjct: 32  EEDVSAVIPAVTVVLEGRAICQRISLHKHASY--ESLAKALRGMFVPEDDGGGGDSGSGE 91

Query: 61  QRLDLSNSV---WVLMKTLKNDLLLAGD 85
           +RLDLSN+V    V  + ++NDLLLAGD
Sbjct: 92  RRLDLSNAVPGHLVAYEDIENDLLLAGD 117

[Close]

BLAST of MS012963 vs. NCBI nr
Match: XP_023538318.1 (auxin-responsive protein IAA33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1   KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESGSGEQ 60
           +ED + V+P V VVLEGRAIC+ +S HKHASY  E   +AL  MFV ++D GG   SGE+
Sbjct: 48  EEDFAAVIPPVTVVLEGRAICQRISLHKHASY--ESLAKALRRMFVDDDDGGGGEPSGER 107

Query: 61  RLDLSNSV---WVLMKTLKNDLLLAGD 85
           +LDL+N+V    V  + ++NDLLLAGD
Sbjct: 108 QLDLANAVPGHLVAYEDIENDLLLAGD 132

[Close]

BLAST of MS012963 vs. NCBI nr
Match: XP_038890972.1 (auxin-responsive protein IAA33 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-12
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1   KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESG--SG 60
           +ED + V+P V VVLEGRAIC+ +S HKHASY  E   +AL  MFV +ED GG  G  SG
Sbjct: 42  EEDFAAVIPPVTVVLEGRAICQRISLHKHASY--ESLAKALRRMFVDDEDGGGGGGENSG 101

Query: 61  EQRLDLSNSV---WVLMKTLKNDLLLAGD 85
           E++LDL+N+V    V  + ++NDLLLAGD
Sbjct: 102 ERQLDLTNAVPGHIVAYEDIENDLLLAGD 128

[Close]

BLAST of MS012963 vs. NCBI nr
Match: KAA0055571.1 (auxin-responsive protein IAA33 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 1   KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESGSGEQ 60
           +ED S V+P V VVLEGRAIC+ +S HKH SY  E   +AL  MFV ++D G E  SGE+
Sbjct: 33  EEDFSAVIPPVTVVLEGRAICQRISLHKHGSY--ESLAKALRRMFVDDDDEGEE--SGER 92

Query: 61  RLDLSNSV---WVLMKTLKNDLLLAGD 85
           RLDL+N+V    V  + ++NDLLLAGD
Sbjct: 93  RLDLTNAVPGYIVAYEDIENDLLLAGD 115

[Close]

BLAST of MS012963 vs. NCBI nr
Match: XP_008451708.1 (PREDICTED: auxin-responsive protein IAA33 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 1   KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESGSGEQ 60
           +ED S V+P V VVLEGRAIC+ +S HKH SY  E   +AL  MFV ++D G E  SGE+
Sbjct: 33  EEDFSAVIPPVTVVLEGRAICQRISLHKHGSY--ESLAKALRRMFVDDDDEGEE--SGER 92

Query: 61  RLDLSNSV---WVLMKTLKNDLLLAGD 85
           RLDL+N+V    V  + ++NDLLLAGD
Sbjct: 93  RLDLTNAVPGYIVAYEDIENDLLLAGD 115

[Close]

BLAST of MS012963 vs. ExPASy Swiss-Prot
Match: Q9FKM7 (Auxin-responsive protein IAA33 OS=Arabidopsis thaliana OX=3702 GN=IAA33 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 5   SVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESGSGEQRLDL 64
           S VVP V VVLEGR+IC+ +S  KH SY  +    AL  MFV   DS  +       LDL
Sbjct: 69  SSVVPPVTVVLEGRSICQRISLDKHGSY--QSLASALRQMFVDGADSTDD-------LDL 128

Query: 65  SNSV---WVLMKTLKNDLLLAGD 85
           SN++    +  + ++NDLLLAGD
Sbjct: 129 SNAIPGHLIAYEDMENDLLLAGD 142

[Close]

BLAST of MS012963 vs. ExPASy TrEMBL
Match: A0A6J1DKE3 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111020871 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.6e-16
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1   KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEED-SGGESGSGE 60
           +ED S V+P V VVLEGRAIC+ +S HKHASY  E   +AL GMFV E+D  GG+SGSGE
Sbjct: 32  EEDVSAVIPAVTVVLEGRAICQRISLHKHASY--ESLAKALRGMFVPEDDGGGGDSGSGE 91

Query: 61  QRLDLSNSV---WVLMKTLKNDLLLAGD 85
           +RLDLSN+V    V  + ++NDLLLAGD
Sbjct: 92  RRLDLSNAVPGHLVAYEDIENDLLLAGD 117

[Close]

BLAST of MS012963 vs. ExPASy TrEMBL
Match: A0A5A7UPU6 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00510 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 1   KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESGSGEQ 60
           +ED S V+P V VVLEGRAIC+ +S HKH SY  E   +AL  MFV ++D G E  SGE+
Sbjct: 33  EEDFSAVIPPVTVVLEGRAICQRISLHKHGSY--ESLAKALRRMFVDDDDEGEE--SGER 92

Query: 61  RLDLSNSV---WVLMKTLKNDLLLAGD 85
           RLDL+N+V    V  + ++NDLLLAGD
Sbjct: 93  RLDLTNAVPGYIVAYEDIENDLLLAGD 115

[Close]

BLAST of MS012963 vs. ExPASy TrEMBL
Match: A0A1S3BRI6 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103492920 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 1   KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESGSGEQ 60
           +ED S V+P V VVLEGRAIC+ +S HKH SY  E   +AL  MFV ++D G E  SGE+
Sbjct: 33  EEDFSAVIPPVTVVLEGRAICQRISLHKHGSY--ESLAKALRRMFVDDDDEGEE--SGER 92

Query: 61  RLDLSNSV---WVLMKTLKNDLLLAGD 85
           RLDL+N+V    V  + ++NDLLLAGD
Sbjct: 93  RLDLTNAVPGYIVAYEDIENDLLLAGD 115

[Close]

BLAST of MS012963 vs. ExPASy TrEMBL
Match: A0A5D3BTE4 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00320 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-11
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 1   KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESGSGEQ 60
           +ED + V+P V VVLEGRAIC+ +S HKH SY  E   +AL  MFV ++D G E  SGE+
Sbjct: 33  EEDFAAVIPPVTVVLEGRAICQRISLHKHGSY--ESLAKALRRMFVDDDDEGEE--SGER 92

Query: 61  RLDLSNSV---WVLMKTLKNDLLLAGD 85
           RLDL+N+V    V  + ++NDLLLAGD
Sbjct: 93  RLDLTNAVPGYIVAYEDIENDLLLAGD 115

[Close]

BLAST of MS012963 vs. ExPASy TrEMBL
Match: A0A6J1I3D9 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111468644 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.9e-11
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 1   KEDASVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESG---- 60
           +ED + V+P V VVLEGRAIC+ +S HKHASY  E   +AL  MFV ++D G  SG    
Sbjct: 46  EEDFAAVIPPVTVVLEGRAICQRISLHKHASY--ESLAKALRRMFVDDDDGGCGSGGGGE 105

Query: 61  -SGEQRLDLSNSV---WVLMKTLKNDLLLAGD 85
            SG+++LDL+N+V    V  + ++NDLLLAGD
Sbjct: 106 PSGDRQLDLANAVPGHLVAYEDIENDLLLAGD 135

[Close]

BLAST of MS012963 vs. TAIR 10
Match: AT5G57420.1 (indole-3-acetic acid inducible 33 )

HSP 1 Score: 53.9 bits (128), Expect = 7.9e-08
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 5   SVVVPLVMVVLEGRAICRWVSPHKHASYDREPGKEALGGMFVQEEDSGGESGSGEQRLDL 64
           S VVP V VVLEGR+IC+ +S  KH SY  +    AL  MFV   DS  +       LDL
Sbjct: 69  SSVVPPVTVVLEGRSICQRISLDKHGSY--QSLASALRQMFVDGADSTDD-------LDL 128

Query: 65  SNSV---WVLMKTLKNDLLLAGD 85
           SN++    +  + ++NDLLLAGD
Sbjct: 129 SNAIPGHLIAYEDMENDLLLAGD 142

The following BLAST results are available for this feature:

BLAST of MS012963 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153356.1	9.6e-16	61.36	auxin-responsive protein IAA33 [Momordica charantia]	[more]
XP_023538318.1	1.7e-12	54.02	auxin-responsive protein IAA33 [Cucurbita pepo subsp. pepo]	[more]
XP_038890972.1	3.8e-12	55.06	auxin-responsive protein IAA33 [Benincasa hispida]	[more]
KAA0055571.1	2.4e-11	55.17	auxin-responsive protein IAA33 [Cucumis melo var. makuwa]	[more]
XP_008451708.1	2.4e-11	55.17	PREDICTED: auxin-responsive protein IAA33 [Cucumis melo]	[more]

BLAST of MS012963 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKM7	1.1e-06	45.78	Auxin-responsive protein IAA33 OS=Arabidopsis thaliana OX=3702 GN=IAA33 PE=1 SV=...	[more]

BLAST of MS012963 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKE3	4.6e-16	61.36	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111020871 PE=3 SV=...	[more]
A0A5A7UPU6	1.2e-11	55.17	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3BRI6	1.2e-11	55.17	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103492920 PE=3 SV=1	[more]
A0A5D3BTE4	2.6e-11	54.02	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1I3D9	5.9e-11	51.09	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111468644 PE=3 SV=1	[more]

BLAST of MS012963 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57420.1	7.9e-08	45.78	indole-3-acetic acid inducible 33	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012963.1	MS012963.1	mRNA