MS012955 (gene) Bitter gourd (TR) v1

Overview
NameMS012955
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHMA domain-containing protein
Locationscaffold38: 895312 .. 895473 (+)
RNA-Seq ExpressionMS012955
SyntenyMS012955
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGAATTAATTGAGGTTACCATAGATGTGACAAAAAACCAAGTGGTTGTCAAAGGGAATATCAAGTTTCAAAGCAAGAAAGAAGAAATTAATGTTCATTATTCCCAAGTGAATGGTGGTTCTCTAAAATCCATCTCTCTCAAACTTTCAAACCATTGCTTT

mRNA sequence

GCAGAATTAATTGAGGTTACCATAGATGTGACAAAAAACCAAGTGGTTGTCAAAGGGAATATCAAGTTTCAAAGCAAGAAAGAAGAAATTAATGTTCATTATTCCCAAGTGAATGGTGGTTCTCTAAAATCCATCTCTCTCAAACTTTCAAACCATTGCTTT

Coding sequence (CDS)

GCAGAATTAATTGAGGTTACCATAGATGTGACAAAAAACCAAGTGGTTGTCAAAGGGAATATCAAGTTTCAAAGCAAGAAAGAAGAAATTAATGTTCATTATTCCCAAGTGAATGGTGGTTCTCTAAAATCCATCTCTCTCAAACTTTCAAACCATTGCTTT

Protein sequence

AELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVNGGSLKSISLKLSNHCF
Homology
BLAST of MS012955 vs. NCBI nr
Match: XP_022154033.1 (uncharacterized protein LOC111021388 isoform X1 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-18
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0

Query: 1  AELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVNGGSLKSISLKLSNHCF 55
          +ELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQV GGSLKSISL+LSNHCF
Sbjct: 42 SELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVKGGSLKSISLELSNHCF 95

BLAST of MS012955 vs. NCBI nr
Match: XP_022154034.1 (uncharacterized protein LOC111021388 isoform X2 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-18
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0

Query: 1  AELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVNGGSLKSISLKLSNHCF 55
          +ELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQV GGSLKSISL+LSNHCF
Sbjct: 40 SELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVKGGSLKSISLELSNHCF 93

BLAST of MS012955 vs. NCBI nr
Match: KGN55871.1 (hypothetical protein Csa_010412 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-05
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 1  AELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVNGGSLKSISLKLSNHCF 55
          +EL E+TIDVTK QV+VKGN+K QSK +E  +H    N  SLKS S   SN CF
Sbjct: 43 SELAELTIDVTKKQVIVKGNVKCQSKNQENTIHSQMNNCDSLKSPSPHFSNSCF 96

BLAST of MS012955 vs. NCBI nr
Match: XP_023553457.1 (uncharacterized protein LOC111810871 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-05
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 1  AELIEVTIDVTKNQVVVKGNIKFQSK-KEEINVHYSQVNGGSLKSISL--KLSNHCF 55
          +EL+E TIDVTK QVVVKGN+KFQ K  EE  VH    N  SLKS SL  + SN+CF
Sbjct: 42 SELVEFTIDVTKKQVVVKGNVKFQGKIHEENGVHSQTYNSKSLKSQSLTHQFSNNCF 98

BLAST of MS012955 vs. NCBI nr
Match: XP_022965235.1 (uncharacterized protein LOC111465148 isoform X2 [Cucurbita maxima])

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-05
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 1  AELIEVTIDVTKNQVVVKGNIKFQSK-KEEINVHYSQVNGGSLKSISL--KLSNHCF 55
          +EL+E TIDVTK QVVVKGN+KFQ K  EE ++H    N  SLKS SL  + SN CF
Sbjct: 40 SELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQTYNSNSLKSQSLSHQYSNDCF 96

BLAST of MS012955 vs. ExPASy TrEMBL
Match: A0A6J1DJ58 (uncharacterized protein LOC111021388 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021388 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-18
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0

Query: 1  AELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVNGGSLKSISLKLSNHCF 55
          +ELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQV GGSLKSISL+LSNHCF
Sbjct: 42 SELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVKGGSLKSISLELSNHCF 95

BLAST of MS012955 vs. ExPASy TrEMBL
Match: A0A6J1DKV3 (uncharacterized protein LOC111021388 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021388 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-18
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0

Query: 1  AELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVNGGSLKSISLKLSNHCF 55
          +ELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQV GGSLKSISL+LSNHCF
Sbjct: 40 SELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVKGGSLKSISLELSNHCF 93

BLAST of MS012955 vs. ExPASy TrEMBL
Match: A0A0A0L6W5 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020590 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.7e-06
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 1  AELIEVTIDVTKNQVVVKGNIKFQSKKEEINVHYSQVNGGSLKSISLKLSNHCF 55
          +EL E+TIDVTK QV+VKGN+K QSK +E  +H    N  SLKS S   SN CF
Sbjct: 43 SELAELTIDVTKKQVIVKGNVKCQSKNQENTIHSQMNNCDSLKSPSPHFSNSCF 96

BLAST of MS012955 vs. ExPASy TrEMBL
Match: A0A6J1HN60 (uncharacterized protein LOC111465148 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465148 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 1  AELIEVTIDVTKNQVVVKGNIKFQSK-KEEINVHYSQVNGGSLKSISL--KLSNHCF 55
          +EL+E TIDVTK QVVVKGN+KFQ K  EE ++H    N  SLKS SL  + SN CF
Sbjct: 40 SELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQTYNSNSLKSQSLSHQYSNDCF 96

BLAST of MS012955 vs. ExPASy TrEMBL
Match: A0A6J1HQF9 (uncharacterized protein LOC111465148 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465148 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 1  AELIEVTIDVTKNQVVVKGNIKFQSK-KEEINVHYSQVNGGSLKSISL--KLSNHCF 55
          +EL+E TIDVTK QVVVKGN+KFQ K  EE ++H    N  SLKS SL  + SN CF
Sbjct: 42 SELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQTYNSNSLKSQSLSHQYSNDCF 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154033.13.5e-1894.44uncharacterized protein LOC111021388 isoform X1 [Momordica charantia][more]
XP_022154034.13.5e-1894.44uncharacterized protein LOC111021388 isoform X2 [Momordica charantia][more]
KGN55871.12.0e-0557.41hypothetical protein Csa_010412 [Cucumis sativus][more]
XP_023553457.12.6e-0561.40uncharacterized protein LOC111810871 [Cucurbita pepo subsp. pepo][more]
XP_022965235.13.4e-0559.65uncharacterized protein LOC111465148 isoform X2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DJ581.7e-1894.44uncharacterized protein LOC111021388 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DKV31.7e-1894.44uncharacterized protein LOC111021388 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A0A0L6W59.7e-0657.41HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020590 PE=4 SV... [more]
A0A6J1HN601.7e-0559.65uncharacterized protein LOC111465148 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HQF91.7e-0559.65uncharacterized protein LOC111465148 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012955.1MS012955.1mRNA