MS012925 (gene) Bitter gourd (TR) v1

Overview


Name	MS012925
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein YABBY 4-like
Location	scaffold38: 503028 .. 506546 (+)
RNA-Seq Expression	MS012925
Synteny	MS012925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCTTCTTCTCTCCCTACTACCTTCTCGCAACTTTCTCCTTCTCCTCCTCCAGACCAGCTCTGCTACGTGCATTGCAACATTTGCGACACCGTTTTGGGGGTACGTTGTCATTTTCTCGACGCTCTTGGAGTTTCTTGTTTGGTTTTTCTTTATTTCTTTCTTCTGATTCAATTGGGCTGAGTTTGATTTATTTAGGTGAGTGTGCCTCCGGCTAGTTTGTTCAAAACGGTCACCGTCCGATGTGGTCACTGCACCAACCTGCTACCGGTGAACATGCGCGGCGGCGTGCTCCTCCCCTCTACAGATCAATTTCACGGCTTTGCTCGCTCGCCCGCTTTCTTCCCTCTCAACACTCACAATTTTCTGGTACTTGAATCTTCACTTGACCAATTGTTTGATAACGATTTTATTTTTCAGTTGTCATTGTTTTTAAATATTATGCTTGTTTACTAATTTTTTCCTCTCTATCTTCTAATCCACCCCCAAAAACTCTTTCTTTTTTTTTTAATTTGGGTAAAGTAAAACTAAATGAACGATCTCAATTTTCACCTGAAGAAAACGAAAAACAAAATCGTTACCAAGGCATAGGTTAGAAGATGACATAATCTCTAAGTTTTTACACAATCTTTTTCCAAAGTTAACATGGCTTTGCTAGCCCTAAAAGGATGAGATTGAAGAACTCAATACTGAATTTTCAGCTTCTTTCTGAGTTTTGGTGGTTTTCTTTTCAGGAAGAAATCTCAAATCCAAATCCAAATCCAAATCTTGTGATGAACCAAACAGATGGAAATGATTTGACAATGGCCACTCGTGTAGCTAACGATATTCCAAGGCAACCCCCAACCATAAATAGACGTGAGAAAATTCATTCAATCAACTCTAATTTTTTATTACTTTTGTGCTCTTTTTTTTTTTTTTTTTTGGTCTAAAATTGGTTTGAATGATTTATTTTCTTTTCTTTTCTCTTTCCTTTCCATGTTCAATATATAATTAATTAGGAATTTCTTATGATGAACAAGCCTTAAAAAAATCCCATTAATTTTCAAGATAAATTTGAGAAAATGAAAAGAAAGAAGAAAACAACAATTTGGCCTTGGGTAAAGTTACTTTGGTAGGAGACTTCACTTTCAAATCTATTGTTATTAAGCTTTATAGTGACAAGATCAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTTTGTTAATTAAAACTATATTTGATATTTATTTTGTTTTTTTTTTTTAAGAAAAATTAAACTTGCAAACACTACTTTCACCTATGTATTTCTTTGTTTGACATCTACTTTTTAAAAATATTTTCAAAATCTAAACTAAATTTTGAAAACTAAAAAAAAAATTCAAATTTTGTTTTGGTTTTTTAAATTTGGTTTAGAGTTCTAATTTGTTTTTTCTTAACAAGCATATATAATTTTTAAAAATACAAAACTTAAAATAATTATCAAAGACGGCCTAAAAGATTTATGAAAAGAGAGAGAGATTTAATTTAATCAAAAGAAATAATATTTTAAACCACTAATAAAGTATTATCCATAAAGTTGACAATAGTAAATATTAAACAATAAGTTTTGAACTCTTAATTAGATCTATATTGTTCTGTATCCATGTTACTAATTACTAAACTCTAAACTTAAACTTGTAGGATTGTATAACTTCTAATCTTTTTAACCTAATACCTACTACTTTTTTATTTGTGGATAAAGATGTTAATTTTGATGACAATAAATTATCAAATGTAGGATTTTCTTTTAGTATTACAAATCCAAATTACCTGGGGCCTTAAAAGAAATTTAATATCTTAACCAGTCATGTTGGTTGAATCTTAATAAATAAACTTTGATATGACTTTTAAGCGGTGAAAATTTCATAATATGTGGTTGTATAAGTTCTTTCAAAAGGACGAGTTACTTAAATAAGTGGTTTTGAAAAATACTTCGTTCAAAGAACTCAATTTTAGAAAACTAAACCAAACTCCTTTAAAACTTTGACACGATTTTGTTAGAGTAGTGTTTTATCACCTTTTACAAAAGTACTTTTGAAAAGGAAAATGCTAAGCAAGTACTTACTTAAATAATTTAAAATATATATATATATAAAACTTCAAATTGAAAAATAATTTTAATTACTTTTGAGACACTTTTAACTATAGACTCCTAATCAAAATCATAAAAGACTTCAACAAAATGTAGGATGAAGATTCGAACTTCTGACCTTTTGATCGAAATATATGTTTGAACCAGTTGTATTGTCATGTTAAGGTTGGCAATGAGTCGTCCGAGTCAAGATTTAATTACTTCGATGTTTTAAATATATTGAGAGTAAAATTAAATTAATACATGTGTATTGGGACAACATAAAAACAAAATGAGGTACTGATTTAAATTCTTTTGCCTTTTGTTGATGTATCATTAACTATTCTCTTGGTTCTATGTGGTTGAGTCTGCAGCCCTAGTTGCTTTTTCTCCTCTTAGGCTGCCCACCTAAAAAACTTACAAAGTACAAAAGAGAGAGCAAAAAATAATAATAATAAATTAGGGTTTGGTTTGAAAAACTTATTTGAATTATCTTGTAAAAGTTAAAAGGTTCTAATGCAACTTTAATTTAATTTTGGAATGAGTTTAAATCTTAGATACTTTGGTTTGTTAACTTTATATGTTTATTCACTTCTTCTAGTTCCTAAAGTTTGTGTGTAAAAATCTATCTTAGTTCTTGTCAGCAATTTATAATTATATATTTTATCTTAAACCTAAGAATAGAGACTTTTATTTTCTTGATCAAGAAACAGTAATAGGTCAAGTGTACCCTGAACATAGCTCAAACTAATTAAGGTATTTATCTACGACTTAAAGATCACGAGTTCGAATCTCCACCCTTAGATGTATTAAAAAAAAAGTAATAAGTTAGGTGTTTTGGGTATAGCTTCAGATATGTCTATTAACCTGGTAACATGAGCATGTGCTAACACCACACATGTTGGCTGTAAGCTAGTCGAATTGAGCTCGATGAAAATTGATAACAAAATAACAACAATAACCAAAATGATTATTCTTCGAGAGAGTTCATATACTAAACGAGAACCAAAATAGAGAAAGAAAATTAAACTTTAATGAGAGGAGAAAAAAAAACCTTTGAAAAGTATTAGGGTTTATGATTGGTGTGTTGTTTGAAGTGAAAAACAATGTTTTTACACAGCTCCAGAAAAGAGACAGAGAGTACCCTCTGCTTACAACCGATTCATCAAGTGAGTGCTGCTCATTTTCTTTCTTCTCTTTTTATTTCTCTTTCTCTCTCTATTTCTCTGGTTTCTAAATTTAAGAGAGAGAATAAGAACATATAATAAATGTTTATATGTATGTATGTATACATGTATGTATGGTTCAGGGACGAGATCCAACGAATCAAGACTGTGAATCCAGACATCTCCCACAGAGAAGCTTTCAGTGCTGCTGCTAAGAAT

mRNA sequence

ATGTCATCTTCTTCTCTCCCTACTACCTTCTCGCAACTTTCTCCTTCTCCTCCTCCAGACCAGCTCTGCTACGTGCATTGCAACATTTGCGACACCGTTTTGGGGGTGAGTGTGCCTCCGGCTAGTTTGTTCAAAACGGTCACCGTCCGATGTGGTCACTGCACCAACCTGCTACCGGTGAACATGCGCGGCGGCGTGCTCCTCCCCTCTACAGATCAATTTCACGGCTTTGCTCGCTCGCCCGCTTTCTTCCCTCTCAACACTCACAATTTTCTGGAAGAAATCTCAAATCCAAATCCAAATCCAAATCTTGTGATGAACCAAACAGATGGAAATGATTTGACAATGGCCACTCGTGTAGCTAACGATATTCCAAGGCAACCCCCAACCATAAATAGACCTCCAGAAAAGAGACAGAGAGTACCCTCTGCTTACAACCGATTCATCAAGGACGAGATCCAACGAATCAAGACTGTGAATCCAGACATCTCCCACAGAGAAGCTTTCAGTGCTGCTGCTAAGAAT

Coding sequence (CDS)

ATGTCATCTTCTTCTCTCCCTACTACCTTCTCGCAACTTTCTCCTTCTCCTCCTCCAGACCAGCTCTGCTACGTGCATTGCAACATTTGCGACACCGTTTTGGGGGTGAGTGTGCCTCCGGCTAGTTTGTTCAAAACGGTCACCGTCCGATGTGGTCACTGCACCAACCTGCTACCGGTGAACATGCGCGGCGGCGTGCTCCTCCCCTCTACAGATCAATTTCACGGCTTTGCTCGCTCGCCCGCTTTCTTCCCTCTCAACACTCACAATTTTCTGGAAGAAATCTCAAATCCAAATCCAAATCCAAATCTTGTGATGAACCAAACAGATGGAAATGATTTGACAATGGCCACTCGTGTAGCTAACGATATTCCAAGGCAACCCCCAACCATAAATAGACCTCCAGAAAAGAGACAGAGAGTACCCTCTGCTTACAACCGATTCATCAAGGACGAGATCCAACGAATCAAGACTGTGAATCCAGACATCTCCCACAGAGAAGCTTTCAGTGCTGCTGCTAAGAAT

Protein sequence

MSSSSLPTTFSQLSPSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPVNMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMATRVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN

Homology

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BLAST of MS012925 vs. NCBI nr
Match: XP_022153999.1 (axial regulator YABBY 5-like [Momordica charantia])

HSP 1 Score: 336.7 bits (862), Expect = 1.2e-88
Identity = 170/178 (95.51%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLS---PSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNL 60
           MSSSSLPTTFSQLS   PSPP DQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNL
Sbjct: 1   MSSSSLPTTFSQLSPSLPSPPLDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNL 60

Query: 61  LPVNMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMA 120
           LPVNM    LLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMA
Sbjct: 61  LPVNM--PPLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMA 120

Query: 121 TRVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
           TRVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN
Sbjct: 121 TRVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176

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BLAST of MS012925 vs. NCBI nr
Match: XP_038876836.1 (protein YABBY 4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 288.9 bits (738), Expect = 3.0e-74
Identity = 141/175 (80.57%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPV 60
           MSSSS PTTFSQL P  P D++CYVHCNICDT+L VSVP  SLFK VTVRCG+C NLLPV
Sbjct: 1   MSSSSFPTTFSQLPPPSPSDEICYVHCNICDTILAVSVPSTSLFKRVTVRCGYCANLLPV 60

Query: 61  NMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMATRV 120
           NM GG+ LPS++QFHGFA S AFF  NTHNFLEEIS  NPNPN +MNQT+G DLTMATRV
Sbjct: 61  NMCGGMFLPSSNQFHGFAHSTAFFSPNTHNFLEEIS--NPNPNFLMNQTEGIDLTMATRV 120

Query: 121 ANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
           AND+PRQPP+INRPPEKRQRVPSAYNRFIK+EIQRIK  NPDISHREAFSAAAKN
Sbjct: 121 ANDVPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKN 173

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BLAST of MS012925 vs. NCBI nr
Match: XP_038876835.1 (protein YABBY 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 288.9 bits (738), Expect = 3.0e-74
Identity = 141/175 (80.57%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPV 60
           MSSSS PTTFSQL P  P D++CYVHCNICDT+L VSVP  SLFK VTVRCG+C NLLPV
Sbjct: 1   MSSSSFPTTFSQLPPPSPSDEICYVHCNICDTILAVSVPSTSLFKRVTVRCGYCANLLPV 60

Query: 61  NMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMATRV 120
           NM GG+ LPS++QFHGFA S AFF  NTHNFLEEIS  NPNPN +MNQT+G DLTMATRV
Sbjct: 61  NMCGGMFLPSSNQFHGFAHSTAFFSPNTHNFLEEIS--NPNPNFLMNQTEGIDLTMATRV 120

Query: 121 ANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
           AND+PRQPP+INRPPEKRQRVPSAYNRFIK+EIQRIK  NPDISHREAFSAAAKN
Sbjct: 121 ANDVPRQPPSINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKN 173

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BLAST of MS012925 vs. NCBI nr
Match: XP_004150647.1 (protein YABBY 4 isoform X2 [Cucumis sativus] >XP_031738726.1 protein YABBY 4 isoform X2 [Cucumis sativus] >KGN55900.1 hypothetical protein Csa_009483 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 3.3e-73
Identity = 144/175 (82.29%), Postives = 149/175 (85.14%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPV 60
           MSSSS PTTFSQL P PP DQLCYVHCNICDTVL VSVP  SLFK VTVRCG+C NLLPV
Sbjct: 1   MSSSSHPTTFSQL-PPPPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPV 60

Query: 61  NMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMATRV 120
           NM GG+LLPS  QFHGF  S  F   NTHNFLEEIS  NPNPN +MNQT+G DLTMATRV
Sbjct: 61  NMCGGMLLPSPSQFHGFTHSTTFLSPNTHNFLEEIS--NPNPNFLMNQTEGIDLTMATRV 120

Query: 121 ANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
            ND+PRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIK  NPDISHREAFSAAAKN
Sbjct: 121 PNDVPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKN 172

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BLAST of MS012925 vs. NCBI nr
Match: XP_008448889.1 (PREDICTED: protein YABBY 4-like [Cucumis melo] >XP_016900570.1 PREDICTED: protein YABBY 4-like [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 3.3e-73
Identity = 144/175 (82.29%), Postives = 150/175 (85.71%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPV 60
           MSSSSLPTTFSQL   PP DQLCYVHCNICDTVL VSVP  SLFK VTVRCG+C NLLPV
Sbjct: 1   MSSSSLPTTFSQL--PPPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPV 60

Query: 61  NMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMATRV 120
           +M GG+LLPS  QFHGF  S  FF  NTHNFLEEIS  NPNPN +MNQT+G DLTMATRV
Sbjct: 61  SMCGGMLLPSPSQFHGFTHSTTFFSPNTHNFLEEIS--NPNPNFLMNQTEGIDLTMATRV 120

Query: 121 ANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
            ND+PRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIK  NPDISHREAFSAAAKN
Sbjct: 121 PNDVPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKN 171

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BLAST of MS012925 vs. ExPASy Swiss-Prot
Match: Q9XFB1 (Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-41
Identity = 106/195 (54.36%), Postives = 121/195 (62.05%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPSPPP------DQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHC 60
           MSS S+    S  +P+ PP      DQLCYVHC+ CDTVL VSVPP+SLFKTVTVRCGHC
Sbjct: 1   MSSMSMS---SSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHC 60

Query: 61  TNLLPVNM-RGGVLLPSTDQF-HGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQT--- 120
           +NLL V +    +LLPS     H F   P   P    N LEE+ +   N N+ M  +   
Sbjct: 61  SNLLSVTVSMRALLLPSVSNLGHSFLPPPP--PPPPPNLLEEMRSGGQNINMNMMMSHHA 120

Query: 121 ----DGNDLTMATRVANDIPR-----QPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVN 176
                   L MATR    +       +PP  NRPPEKRQRVPSAYNRFIK+EIQRIK  N
Sbjct: 121 SAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGN 180

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BLAST of MS012925 vs. ExPASy Swiss-Prot
Match: O22152 (Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.8e-40
Identity = 101/181 (55.80%), Postives = 122/181 (67.40%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPS--PPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLL 60
           MSS S P++ +  SP    P D LCYV CN C T+L V+VP  SLFKTVTVRCG CTNLL
Sbjct: 3   MSSMSSPSS-AVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLL 62

Query: 61  PVNMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVM--NQTDGNDLT- 120
            VNMR  V LP+++Q        ++F  N  + LEE+ +   N N++M       ND+  
Sbjct: 63  SVNMRSYV-LPASNQLQLQLGPHSYF--NPQDILEELRDAPSNMNMMMMNQHPTMNDIPS 122

Query: 121 -MATRVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAK 176
            M     ++IP+ PP +NRPPEKRQRVPSAYNRFIK+EIQRIK  NPDISHREAFSAAAK
Sbjct: 123 FMDLHQQHEIPKAPP-VNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAK 178

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BLAST of MS012925 vs. ExPASy Swiss-Prot
Match: A2X7Q3 (Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.0e-40
Identity = 102/202 (50.50%), Postives = 123/202 (60.89%), Query Frame = 0


Query: 2   SSSSLPTTFSQLSPSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPVN 61
           SSSS       L+   P +QLCYVHCN CDT+L V VP +SLFKTVTVRCGHC NLL VN
Sbjct: 5   SSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVN 64

Query: 62  MRGGVLLPS-----TDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTM 121
           +R G+LLP+      +Q H F  S    P + H  L+E++     P+L+M Q     L+ 
Sbjct: 65  LR-GLLLPAPAPAPANQLH-FGPS-LLSPTSPHGLLDEVA--FQTPSLLMEQAASASLSS 124

Query: 122 ATRVAN----------------------DIPRQ-PPTINRPPEKRQRVPSAYNRFIKDEI 176
            T  ++                      ++P+  P + NRPPEKRQRVPSAYNRFIKDEI
Sbjct: 125 ITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEI 184

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BLAST of MS012925 vs. ExPASy Swiss-Prot
Match: Q6H668 (Protein YABBY 4 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB4 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.0e-40
Identity = 102/202 (50.50%), Postives = 123/202 (60.89%), Query Frame = 0


Query: 2   SSSSLPTTFSQLSPSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPVN 61
           SSSS       L+   P +QLCYVHCN CDT+L V VP +SLFKTVTVRCGHC NLL VN
Sbjct: 5   SSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVN 64

Query: 62  MRGGVLLPS-----TDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTM 121
           +R G+LLP+      +Q H F  S    P + H  L+E++     P+L+M Q     L+ 
Sbjct: 65  LR-GLLLPAPAPAPANQLH-FGPS-LLSPTSPHGLLDEVA--FQTPSLLMEQAASASLSS 124

Query: 122 ATRVAN----------------------DIPRQ-PPTINRPPEKRQRVPSAYNRFIKDEI 176
            T  ++                      ++P+  P + NRPPEKRQRVPSAYNRFIKDEI
Sbjct: 125 ITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEI 184

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BLAST of MS012925 vs. ExPASy Swiss-Prot
Match: Q01JG2 (Protein YABBY 5 OS=Oryza sativa subsp. indica OX=39946 GN=YAB5 PE=3 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 2.7e-38
Identity = 102/207 (49.28%), Postives = 122/207 (58.94%), Query Frame = 0


Query: 4   SSLPTTFS------QLSPSPPP----DQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGH 63
           SS P TFS           PPP    +QLCYVHCN CDT+L V VP +SLFKTVTVRCGH
Sbjct: 3   SSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGH 62

Query: 64  CTNLLPVNMRGGVLLP---STDQFHGFARSPAFFPLNTHNFLEEI-------------SN 123
           C NLL VN+R G+LLP   ST     F ++    P + H  L+E+             ++
Sbjct: 63  CANLLSVNLR-GLLLPAAASTANQLPFGQA-LLSPTSPHGLLDEVPSFQAPASLMTEQAS 122

Query: 124 PNPNPNLVMNQTDGND------LTMATRVANDIPRQP---PTINRPPEKRQRVPSAYNRF 176
           PN +     N +  N+       + A +     P+QP   P+ NR  EKRQRVPSAYNRF
Sbjct: 123 PNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRF 182

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BLAST of MS012925 vs. ExPASy TrEMBL
Match: A0A6J1DKR6 (axial regulator YABBY 5-like OS=Momordica charantia OX=3673 GN=LOC111021366 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.0e-89
Identity = 170/178 (95.51%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLS---PSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNL 60
           MSSSSLPTTFSQLS   PSPP DQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNL
Sbjct: 1   MSSSSLPTTFSQLSPSLPSPPLDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNL 60

Query: 61  LPVNMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMA 120
           LPVNM    LLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMA
Sbjct: 61  LPVNM--PPLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMA 120

Query: 121 TRVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
           TRVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN
Sbjct: 121 TRVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176

[Close]

BLAST of MS012925 vs. ExPASy TrEMBL
Match: A0A1S4DXY3 (protein YABBY 4-like OS=Cucumis melo OX=3656 GN=LOC103490918 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.6e-73
Identity = 144/175 (82.29%), Postives = 150/175 (85.71%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPV 60
           MSSSSLPTTFSQL   PP DQLCYVHCNICDTVL VSVP  SLFK VTVRCG+C NLLPV
Sbjct: 1   MSSSSLPTTFSQL--PPPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPV 60

Query: 61  NMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMATRV 120
           +M GG+LLPS  QFHGF  S  FF  NTHNFLEEIS  NPNPN +MNQT+G DLTMATRV
Sbjct: 61  SMCGGMLLPSPSQFHGFTHSTTFFSPNTHNFLEEIS--NPNPNFLMNQTEGIDLTMATRV 120

Query: 121 ANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
            ND+PRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIK  NPDISHREAFSAAAKN
Sbjct: 121 PNDVPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKN 171

[Close]

BLAST of MS012925 vs. ExPASy TrEMBL
Match: A0A0A0L1N8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G033810 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.6e-73
Identity = 144/175 (82.29%), Postives = 149/175 (85.14%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPSPPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPV 60
           MSSSS PTTFSQL P PP DQLCYVHCNICDTVL VSVP  SLFK VTVRCG+C NLLPV
Sbjct: 1   MSSSSHPTTFSQL-PPPPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPV 60

Query: 61  NMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMATRV 120
           NM GG+LLPS  QFHGF  S  F   NTHNFLEEIS  NPNPN +MNQT+G DLTMATRV
Sbjct: 61  NMCGGMLLPSPSQFHGFTHSTTFLSPNTHNFLEEIS--NPNPNFLMNQTEGIDLTMATRV 120

Query: 121 ANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
            ND+PRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIK  NPDISHREAFSAAAKN
Sbjct: 121 PNDVPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKN 172

[Close]

BLAST of MS012925 vs. ExPASy TrEMBL
Match: A0A6J1KZK7 (protein YABBY 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498508 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.6e-68
Identity = 138/177 (77.97%), Postives = 143/177 (80.79%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPSPP-PDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLP 60
           MSS SLPTTFSQ  P PP  D LCYVHCNICDTVL VSVP ASLFKTVTVRCGHC NLLP
Sbjct: 1   MSSFSLPTTFSQHPPPPPSSDHLCYVHCNICDTVLAVSVPCASLFKTVTVRCGHCANLLP 60

Query: 61  VNMRGGVLLPSTDQFHGF-ARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMAT 120
           VNMRGG+LLPS + FH F   S  FF  N HNFLEEIS  NPNPN  MNQTDG DLTM T
Sbjct: 61  VNMRGGMLLPSPNHFHAFPPSSTPFFTPNAHNFLEEIS--NPNPNFAMNQTDGIDLTMVT 120

Query: 121 RVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
           RV ND+PR P  INRP EK+QRVPSAYNRFIK+EIQRIK  NPDISHREAFSAAAKN
Sbjct: 121 RVGNDVPRAPSNINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKN 175

[Close]

BLAST of MS012925 vs. ExPASy TrEMBL
Match: A0A6J1KXR1 (protein YABBY 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498508 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.6e-68
Identity = 138/177 (77.97%), Postives = 143/177 (80.79%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPSPP-PDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLP 60
           MSS SLPTTFSQ  P PP  D LCYVHCNICDTVL VSVP ASLFKTVTVRCGHC NLLP
Sbjct: 1   MSSFSLPTTFSQHPPPPPSSDHLCYVHCNICDTVLAVSVPCASLFKTVTVRCGHCANLLP 60

Query: 61  VNMRGGVLLPSTDQFHGF-ARSPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMAT 120
           VNMRGG+LLPS + FH F   S  FF  N HNFLEEIS  NPNPN  MNQTDG DLTM T
Sbjct: 61  VNMRGGMLLPSPNHFHAFPPSSTPFFTPNAHNFLEEIS--NPNPNFAMNQTDGIDLTMVT 120

Query: 121 RVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
           RV ND+PR P  INRP EK+QRVPSAYNRFIK+EIQRIK  NPDISHREAFSAAAKN
Sbjct: 121 RVGNDVPRAPSNINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKN 175

[Close]

BLAST of MS012925 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-42
Identity = 106/195 (54.36%), Postives = 121/195 (62.05%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPSPPP------DQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHC 60
           MSS S+    S  +P+ PP      DQLCYVHC+ CDTVL VSVPP+SLFKTVTVRCGHC
Sbjct: 1   MSSMSMS---SSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHC 60

Query: 61  TNLLPVNM-RGGVLLPSTDQF-HGFARSPAFFPLNTHNFLEEISNPNPNPNLVMNQT--- 120
           +NLL V +    +LLPS     H F   P   P    N LEE+ +   N N+ M  +   
Sbjct: 61  SNLLSVTVSMRALLLPSVSNLGHSFLPPPP--PPPPPNLLEEMRSGGQNINMNMMMSHHA 120

Query: 121 ----DGNDLTMATRVANDIPR-----QPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVN 176
                   L MATR    +       +PP  NRPPEKRQRVPSAYNRFIK+EIQRIK  N
Sbjct: 121 SAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGN 180

[Close]

BLAST of MS012925 vs. TAIR 10
Match: AT2G45190.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 166.0 bits (419), Expect = 2.7e-41
Identity = 101/181 (55.80%), Postives = 122/181 (67.40%), Query Frame = 0


Query: 1   MSSSSLPTTFSQLSPS--PPPDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLL 60
           MSS S P++ +  SP    P D LCYV CN C T+L V+VP  SLFKTVTVRCG CTNLL
Sbjct: 3   MSSMSSPSS-AVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLL 62

Query: 61  PVNMRGGVLLPSTDQFHGFARSPAFFPLNTHNFLEEISNPNPNPNLVM--NQTDGNDLT- 120
            VNMR  V LP+++Q        ++F  N  + LEE+ +   N N++M       ND+  
Sbjct: 63  SVNMRSYV-LPASNQLQLQLGPHSYF--NPQDILEELRDAPSNMNMMMMNQHPTMNDIPS 122

Query: 121 -MATRVANDIPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAK 176
            M     ++IP+ PP +NRPPEKRQRVPSAYNRFIK+EIQRIK  NPDISHREAFSAAAK
Sbjct: 123 FMDLHQQHEIPKAPP-VNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAK 178

[Close]

BLAST of MS012925 vs. TAIR 10
Match: AT4G00180.2 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 141.4 bits (355), Expect = 7.1e-34
Identity = 87/161 (54.04%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 29  ICDTVLGVSVPPASLFKTVTVRCGHCTNLLPVNM-RGGVLLPSTDQF-HGFARSPAFFPL 88
           +CD    VSVPP+SLFKTVTVRCGHC+NLL V +    +LLPS     H F   P   P 
Sbjct: 1   MCDINWQVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPP--PP 60

Query: 89  NTHNFLEEISNPNPNPNLVMNQT-------DGNDLTMATRVANDIPR-----QPPTINRP 148
              N LEE+ +   N N+ M  +           L MATR    +       +PP  NRP
Sbjct: 61  PPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRP 120

Query: 149 PEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
           PEKRQRVPSAYNRFIK+EIQRIK  NPDISHREAFSAAAKN
Sbjct: 121 PEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 159

[Close]

BLAST of MS012925 vs. TAIR 10
Match: AT1G08465.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-33
Identity = 80/156 (51.28%), Postives = 99/156 (63.46%), Query Frame = 0


Query: 20  DQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPVNMRGGVLLPSTDQFHGFAR 79
           +++CYVHC+ C T+L VSVP ASLF  VTVRCGHCTNLL +N+  GV L      H  + 
Sbjct: 8   ERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNI--GVSL------HQTSA 67

Query: 80  SPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMATRVANDIPRQPPTINRPPEKRQ 139
            P    L  H   +  ++     +   +    N+L  +  +  + PR PP   RPPEKRQ
Sbjct: 68  PPIHQDLQPHR--QHTTSLVTRKDCASSSRSTNNL--SENIDREAPRMPPI--RPPEKRQ 127

Query: 140 RVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
           RVPSAYNRFIK+EIQRIK  NP+ISHREAFS AAKN
Sbjct: 128 RVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKN 149

[Close]

BLAST of MS012925 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 131.0 bits (328), Expect = 9.6e-31
Identity = 75/160 (46.88%), Postives = 91/160 (56.88%), Query Frame = 0


Query: 20  DQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPVNMRGGVLLPSTDQFHGFAR 79
           +QLCY+ CN C+ +L V+VP +SLF  VTVRCGHCTNL  VNM                 
Sbjct: 9   EQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAA-------------- 68

Query: 80  SPAFFPLNTHNFLEEISNPNPNPNLVMNQTDGNDLTMATRVANDIPRQPPT----INRPP 139
                       L+ +S PN           G+     T++ + I  +  T    +NRPP
Sbjct: 69  ------------LQSLSRPNFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPP 128

Query: 140 EKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKN 176
           EKRQRVPSAYN+FIK+EIQRIK  NPDISHREAFS AAKN
Sbjct: 129 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKN 142

The following BLAST results are available for this feature:

BLAST of MS012925 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153999.1	1.2e-88	95.51	axial regulator YABBY 5-like [Momordica charantia]	[more]
XP_038876836.1	3.0e-74	80.57	protein YABBY 4-like isoform X2 [Benincasa hispida]	[more]
XP_038876835.1	3.0e-74	80.57	protein YABBY 4-like isoform X1 [Benincasa hispida]	[more]
XP_004150647.1	3.3e-73	82.29	protein YABBY 4 isoform X2 [Cucumis sativus] >XP_031738726.1 protein YABBY 4 iso...	[more]
XP_008448889.1	3.3e-73	82.29	PREDICTED: protein YABBY 4-like [Cucumis melo] >XP_016900570.1 PREDICTED: protei...	[more]

BLAST of MS012925 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XFB1	2.0e-41	54.36	Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1	[more]
O22152	3.8e-40	55.80	Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1	[more]
A2X7Q3	5.0e-40	50.50	Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1	[more]
Q6H668	5.0e-40	50.50	Protein YABBY 4 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB4 PE=2 SV=1	[more]
Q01JG2	2.7e-38	49.28	Protein YABBY 5 OS=Oryza sativa subsp. indica OX=39946 GN=YAB5 PE=3 SV=2	[more]

BLAST of MS012925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKR6	6.0e-89	95.51	axial regulator YABBY 5-like OS=Momordica charantia OX=3673 GN=LOC111021366 PE=3...	[more]
A0A1S4DXY3	1.6e-73	82.29	protein YABBY 4-like OS=Cucumis melo OX=3656 GN=LOC103490918 PE=3 SV=1	[more]
A0A0A0L1N8	1.6e-73	82.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G033810 PE=3 SV=1	[more]
A0A6J1KZK7	7.6e-68	77.97	protein YABBY 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498508 PE=3...	[more]
A0A6J1KXR1	7.6e-68	77.97	protein YABBY 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498508 PE=3...	[more]

BLAST of MS012925 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00180.1	1.4e-42	54.36	Plant-specific transcription factor YABBY family protein	[more]
AT2G45190.1	2.7e-41	55.80	Plant-specific transcription factor YABBY family protein	[more]
AT4G00180.2	7.1e-34	54.04	Plant-specific transcription factor YABBY family protein	[more]
AT1G08465.1	4.6e-33	51.28	Plant-specific transcription factor YABBY family protein	[more]
AT2G26580.1	9.6e-31	46.88	plant-specific transcription factor YABBY family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 18..175 e-value: 2.6E-58 score: 197.3
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 1..175
None	No IPR available	PANTHER	PTHR31675:SF4	AXIAL REGULATOR YABBY 3	coord: 1..175
None	No IPR available	CDD	cd00084	HMG-box	coord: 140..167 e-value: 9.13105E-4 score: 34.1316
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 126..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012925.1	MS012925.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development