MS012918 (gene) Bitter gourd (TR) v1

Overview


Name	MS012918
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Threonine synthase
Location	scaffold38: 440786 .. 440943 (-)
RNA-Seq Expression	MS012918
Synteny	MS012918

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCTTCCAATTTACCTAGCAAATTTGCCCAACAATTTAAGATTGGAATGGCAAAAGACCGCCGCCATTGAGATCCTTTAGCAATTCGAGTTATCGTACCAGGACAAAACATAGGGAATATATATGCATTTTACAAAGAATTTCAAATGTGTCAAGAA

mRNA sequence

GAGCTTCCAATTTACCTAGCAAATTTGCCCAACAATTTAAGATTGGAATGGCAAAAGACCGCCGCCATTGAGATCCTTGCAATTCGAGTTATCGTACCAGGACAAAACATAGGGAATATATATGCATTTTACAAAGAATTTCAAATGTGTCAAGAA

Coding sequence (CDS)

GAGCTTCCAATTTACCTAGCAAATTTGCCCAACAATTTAAGATTGGAATGGCAAAAGACCGCCGCCATTGAGATCCTTGCAATTCGAGTTATCGTACCAGGACAAAACATAGGGAATATATATGCATTTTACAAAGAATTTCAAATGTGTCAAGAA

Protein sequence

ELPIYLANLPNNLRLEWQKTAAIEILAIRVIVPGQNIGNIYAFYKEFQMCQE

Homology

[Close]

BLAST of MS012918 vs. NCBI nr
Match: PIA49947.1 (hypothetical protein AQUCO_01300585v1 [Aquilegia coerulea])

HSP 1 Score: 76.6 bits (187), Expect = 6.9e-11
Identity = 42/59 (71.19%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK FQMCQE
Sbjct: 273 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFQMCQE 331

[Close]

BLAST of MS012918 vs. NCBI nr
Match: XP_009128436.1 (threonine synthase 1, chloroplastic [Brassica rapa])

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK F+MCQE
Sbjct: 292 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQE 350

[Close]

BLAST of MS012918 vs. NCBI nr
Match: CAA7048843.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK F+MCQE
Sbjct: 88  ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQE 146

[Close]

BLAST of MS012918 vs. NCBI nr
Match: XP_016562518.1 (PREDICTED: threonine synthase, chloroplastic [Capsicum annuum] >KAF3615750.1 Threonine synthase 1, chloroplastic [Capsicum annuum] >KAF3649507.1 Threonine synthase 1, chloroplastic [Capsicum annuum] >PHT47301.1 Threonine synthase 1, chloroplastic [Capsicum baccatum] >PHT86088.1 Threonine synthase 1, chloroplastic [Capsicum annuum])

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK FQMC+E
Sbjct: 290 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFQMCKE 348

[Close]

BLAST of MS012918 vs. NCBI nr
Match: XP_042056583.1 (threonine synthase, chloroplastic-like [Salvia splendens] >KAG6425826.1 hypothetical protein SASPL_110031 [Salvia splendens])

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK FQMC+E
Sbjct: 287 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFQMCKE 345

[Close]

BLAST of MS012918 vs. ExPASy Swiss-Prot
Match: Q9S7B5 (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS1 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-13
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK F+MCQE
Sbjct: 294 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQE 352

[Close]

BLAST of MS012918 vs. ExPASy Swiss-Prot
Match: Q9MT28 (Threonine synthase, chloroplastic OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-13
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK FQMC+E
Sbjct: 287 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFQMCKE 345

[Close]

BLAST of MS012918 vs. ExPASy Swiss-Prot
Match: Q9SSP5 (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS2 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.9e-13
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK F MC+E
Sbjct: 285 ELPIYLANSLNSLRLEGQKTAAIEILQQFNWQVPDWVIVPGGNLGNIYAFYKGFHMCKE 343

[Close]

BLAST of MS012918 vs. ExPASy TrEMBL
Match: A0A2G5E336 (PALP domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01300585v1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-11
Identity = 42/59 (71.19%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK FQMCQE
Sbjct: 273 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFQMCQE 331

[Close]

BLAST of MS012918 vs. ExPASy TrEMBL
Match: A0A7J6F0U7 (Threonine synthase OS=Cannabis sativa OX=3483 GN=F8388_002090 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK F+MCQE
Sbjct: 288 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQE 346

[Close]

BLAST of MS012918 vs. ExPASy TrEMBL
Match: A0A5S9XX37 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS19776 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK F+MCQE
Sbjct: 294 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQE 352

[Close]

BLAST of MS012918 vs. ExPASy TrEMBL
Match: A0A6P5XP89 (Threonine synthase OS=Durio zibethinus OX=66656 GN=LOC111285020 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK F+MCQE
Sbjct: 302 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCQE 360

[Close]

BLAST of MS012918 vs. ExPASy TrEMBL
Match: I1MD26 (Threonine synthase OS=Glycine max OX=3847 GN=100805303 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK F+MCQE
Sbjct: 289 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQE 347

[Close]

BLAST of MS012918 vs. TAIR 10
Match: AT4G29840.1 (Pyridoxal-5'-phosphate-dependent enzyme family protein )

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-14
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK F+MCQE
Sbjct: 294 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQE 352

[Close]

BLAST of MS012918 vs. TAIR 10
Match: AT1G72810.1 (Pyridoxal-5'-phosphate-dependent enzyme family protein )

HSP 1 Score: 73.2 bits (178), Expect = 7.1e-14
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   ELPIYLANLPNNLRLEWQKTAAIEIL-------AIRVIVPGQNIGNIYAFYKEFQMCQE 53
           ELPIYLAN  N+LRLE QKTAAIEIL          VIVPG N+GNIYAFYK F MC+E
Sbjct: 285 ELPIYLANSLNSLRLEGQKTAAIEILQQFNWQVPDWVIVPGGNLGNIYAFYKGFHMCKE 343

The following BLAST results are available for this feature:

BLAST of MS012918 vs. NCBI nr


Match Name	E-value	Identity	Description
PIA49947.1	6.9e-11	71.19	hypothetical protein AQUCO_01300585v1 [Aquilegia coerulea]	[more]
XP_009128436.1	2.0e-10	69.49	threonine synthase 1, chloroplastic [Brassica rapa]	[more]
CAA7048843.1	2.0e-10	69.49	unnamed protein product [Microthlaspi erraticum]	[more]
XP_016562518.1	2.0e-10	69.49	PREDICTED: threonine synthase, chloroplastic [Capsicum annuum] >KAF3615750.1 Thr...	[more]
XP_042056583.1	2.0e-10	69.49	threonine synthase, chloroplastic-like [Salvia splendens] >KAG6425826.1 hypothet...	[more]

BLAST of MS012918 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7B5	2.6e-13	69.49	Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS1 PE=1 ...	[more]
Q9MT28	2.6e-13	69.49	Threonine synthase, chloroplastic OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]
Q9SSP5	9.9e-13	67.80	Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TS2 PE=1 ...	[more]

BLAST of MS012918 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G5E336	3.3e-11	71.19	PALP domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01300585...	[more]
A0A7J6F0U7	9.7e-11	69.49	Threonine synthase OS=Cannabis sativa OX=3483 GN=F8388_002090 PE=3 SV=1	[more]
A0A5S9XX37	9.7e-11	69.49	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS1...	[more]
A0A6P5XP89	9.7e-11	69.49	Threonine synthase OS=Durio zibethinus OX=66656 GN=LOC111285020 PE=3 SV=1	[more]
I1MD26	9.7e-11	69.49	Threonine synthase OS=Glycine max OX=3847 GN=100805303 PE=3 SV=1	[more]

BLAST of MS012918 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29840.1	1.9e-14	69.49	Pyridoxal-5'-phosphate-dependent enzyme family protein	[more]
AT1G72810.1	7.1e-14	67.80	Pyridoxal-5'-phosphate-dependent enzyme family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10314:SF176	THREONINE SYNTHASE, CHLOROPLASTIC-LIKE ISOFORM X1	coord: 1..50
None	No IPR available	PANTHER	PTHR10314	CYSTATHIONINE BETA-SYNTHASE	coord: 1..50
IPR036052	Tryptophan synthase beta subunit-like PLP-dependent enzyme	SUPERFAMILY	53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	coord: 2..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012918.1	MS012918.1	mRNA