MS012895 (gene) Bitter gourd (TR) v1

Overview
NameMS012895
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNAC transcription factor 29-like
Locationscaffold38: 173133 .. 173336 (+)
RNA-Seq ExpressionMS012895
SyntenyMS012895
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACAAGACCATATTGGGTACTATGAAACATTTTCATTATGAGAATGGTCAAGATTGTGGTTATTTTTCGTGGATCATGTATGAGTACTCTCTTGATCCTTCCCATCTACGATCACATACAAAAAACGATATAAAAGATTCTTATGCACATAAAATTTTTTTATTTAATTTTTCACTAATAAAAAAATTAATAAAATATAAAAAA

mRNA sequence

GACAAGACCATATTGGGTACTATGAAACATTTTCATTATGAGAATGGTCAAGATTGTGGTTATTTTTCGTGGATCATGTATGAGTACTCTCTTGATCCTTCCCATCTACGATCACATACAAAAAACGATATAAAAGATTCTTATGCACATAAAATTTTTTTATTTAATTTTTCACTAATAAAAAAATTAATAAAATATAAAAAA

Coding sequence (CDS)

GACAAGACCATATTGGGTACTATGAAACATTTTCATTATGAGAATGGTCAAGATTGTGGTTATTTTTCGTGGATCATGTATGAGTACTCTCTTGATCCTTCCCATCTACGATCACATACAAAAAACGATATAAAAGATTCTTATGCACATAAAATTTTTTTATTTAATTTTTCACTAATAAAAAAATTAATAAAATATAAAAAA

Protein sequence

DKTILGTMKHFHYENGQDCGYFSWIMYEYSLDPSHLRSHTKNDIKDSYAHKIFLFNFSLIKKLIKYKK
Homology
[Close]
BLAST of MS012895 vs. NCBI nr
Match: XP_022159029.1 (NAC transcription factor 29-like [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-12
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 2   KTILGTMKHFHYENGQDCGYFSWIMYEYSLDPSHLRSHTKNDIKDSY 49
           KT+LGTMK FHYENGQDC  FSWIMYEYSLDPS L S    DIKDSY
Sbjct: 104 KTLLGTMKRFHYENGQDCSQFSWIMYEYSLDPSILPSTNTIDIKDSY 150

[Close]
BLAST of MS012895 vs. NCBI nr
Match: XP_022145773.1 (NAC domain-containing protein 12-like [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-12
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 4   ILGTMKHFHYENGQDCGYFSWIMYEYSLDPSHLRSHTKNDIKDSY 49
           +LGTMK FHYENGQDCG FSWIMYEYSLDPS L S T  DIKDSY
Sbjct: 103 LLGTMKRFHYENGQDCGPFSWIMYEYSLDPSILPSTTTIDIKDSY 147

[Close]
BLAST of MS012895 vs. ExPASy TrEMBL
Match: A0A6J1E162 (NAC transcription factor 29-like OS=Momordica charantia OX=3673 GN=LOC111025473 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 2   KTILGTMKHFHYENGQDCGYFSWIMYEYSLDPSHLRSHTKNDIKDSY 49
           KT+LGTMK FHYENGQDC  FSWIMYEYSLDPS L S    DIKDSY
Sbjct: 104 KTLLGTMKRFHYENGQDCSQFSWIMYEYSLDPSILPSTNTIDIKDSY 150

[Close]
BLAST of MS012895 vs. ExPASy TrEMBL
Match: A0A6J1CWV5 (NAC domain-containing protein 12-like OS=Momordica charantia OX=3673 GN=LOC111015148 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 4   ILGTMKHFHYENGQDCGYFSWIMYEYSLDPSHLRSHTKNDIKDSY 49
           +LGTMK FHYENGQDCG FSWIMYEYSLDPS L S T  DIKDSY
Sbjct: 103 LLGTMKRFHYENGQDCGPFSWIMYEYSLDPSILPSTTTIDIKDSY 147

The following BLAST results are available for this feature:
BLAST of MS012895 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159029.13.6e-1278.72NAC transcription factor 29-like [Momordica charantia][more]
XP_022145773.16.2e-1282.22NAC domain-containing protein 12-like [Momordica charantia][more]
BLAST of MS012895 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS012895 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E1621.8e-1278.72NAC transcription factor 29-like OS=Momordica charantia OX=3673 GN=LOC111025473 ... [more]
A0A6J1CWV53.0e-1282.22NAC domain-containing protein 12-like OS=Momordica charantia OX=3673 GN=LOC11101... [more]
BLAST of MS012895 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012895.1MS012895.1mRNA