MS012894 (gene) Bitter gourd (TR) v1

Overview
NameMS012894
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNAC domain-containing protein 12-like
Locationscaffold38: 172580 .. 172714 (+)
RNA-Seq ExpressionMS012894
SyntenyMS012894
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTACTATGAAACATTTTCATTATGAGAAGGGTCAAGATTGTGGTCAATTTTCGTGGATTATGTATGAGTACTCTCTTGATCCTTCCAATCTACGATTAGATACAAAAAACGATATAAAAGATTCTTATGTTCTT

mRNA sequence

GGTACTATGAAACATTTTCATTATGAGAAGGGTCAAGATTGTGGTCAATTTTCGTGGATTATGTATGAGTACTCTCTTGATCCTTCCAATCTACGATTAGATACAAAAAACGATATAAAAGATTCTTATGTTCTT

Coding sequence (CDS)

GGTACTATGAAACATTTTCATTATGAGAAGGGTCAAGATTGTGGTCAATTTTCGTGGATTATGTATGAGTACTCTCTTGATCCTTCCAATCTACGATTAGATACAAAAAACGATATAAAAGATTCTTATGTTCTT

Protein sequence

GTMKHFHYEKGQDCGQFSWIMYEYSLDPSNLRLDTKNDIKDSYVL
Homology
[Close]
BLAST of MS012894 vs. NCBI nr
Match: XP_022145773.1 (NAC domain-containing protein 12-like [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 36/45 (80.00%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 1   GTMKHFHYEKGQDCGQFSWIMYEYSLDPSNLRLDTKNDIKDSYVL 46
           GTMK FHYE GQDCG FSWIMYEYSLDPS L   T  DIKDSYVL
Sbjct: 105 GTMKRFHYENGQDCGPFSWIMYEYSLDPSILPSTTTIDIKDSYVL 149

[Close]
BLAST of MS012894 vs. NCBI nr
Match: XP_022159029.1 (NAC transcription factor 29-like [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 7.8e-11
Identity = 35/45 (77.78%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 1   GTMKHFHYEKGQDCGQFSWIMYEYSLDPSNLRLDTKNDIKDSYVL 46
           GTMK FHYE GQDC QFSWIMYEYSLDPS L      DIKDSYVL
Sbjct: 108 GTMKRFHYENGQDCSQFSWIMYEYSLDPSILPSTNTIDIKDSYVL 152

[Close]
BLAST of MS012894 vs. ExPASy TrEMBL
Match: A0A6J1CWV5 (NAC domain-containing protein 12-like OS=Momordica charantia OX=3673 GN=LOC111015148 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.9e-12
Identity = 36/45 (80.00%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 1   GTMKHFHYEKGQDCGQFSWIMYEYSLDPSNLRLDTKNDIKDSYVL 46
           GTMK FHYE GQDCG FSWIMYEYSLDPS L   T  DIKDSYVL
Sbjct: 105 GTMKRFHYENGQDCGPFSWIMYEYSLDPSILPSTTTIDIKDSYVL 149

[Close]
BLAST of MS012894 vs. ExPASy TrEMBL
Match: A0A6J1E162 (NAC transcription factor 29-like OS=Momordica charantia OX=3673 GN=LOC111025473 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 35/45 (77.78%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 1   GTMKHFHYEKGQDCGQFSWIMYEYSLDPSNLRLDTKNDIKDSYVL 46
           GTMK FHYE GQDC QFSWIMYEYSLDPS L      DIKDSYVL
Sbjct: 108 GTMKRFHYENGQDCSQFSWIMYEYSLDPSILPSTNTIDIKDSYVL 152

The following BLAST results are available for this feature:
BLAST of MS012894 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145773.12.0e-1180.00NAC domain-containing protein 12-like [Momordica charantia][more]
XP_022159029.17.8e-1177.78NAC transcription factor 29-like [Momordica charantia][more]
BLAST of MS012894 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS012894 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CWV59.9e-1280.00NAC domain-containing protein 12-like OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A6J1E1623.8e-1177.78NAC transcription factor 29-like OS=Momordica charantia OX=3673 GN=LOC111025473 ... [more]
BLAST of MS012894 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012894.1MS012894.1mRNA