MS012879 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCTGCCGCCGACGTTGTCGAAATCCAGACCAATGTAGCCGCTTCCGATGCTCTTGATTCTCACGACGGCGACGATGATCCAAAAGCCGCCACCGCAGCCGCCGCCGCCGTCGCCACACATTCCGGTATCCCTTCTGCACCCACCACTTCTATGTTTGTTTCTTCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGAGGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCCAGCGGTGACCCCGATAAAATGGCGAAGATGCAGTATGTTCTCTCCACTCTCTCAATATTCGGGATTAATTTCTGTTTTTAATTGATCATTCTGTTCCAAGTTGCGCTAGTTTAGATTCAATTACCTCTGCCGGTTTCTCTTGTCTGTGATTACGATAATTTTTAGGTTTGACTACAAATTCTGAGCATTGTTCGTGTCTGTAAGAGGGTTTTGTTTTTGTTACTTCATCAAATGTTAGAAAAAGGTTGAAAGCCAAACGCATGTCAAGGTAAATCCTATCGGGGAATGTTAAAACGGCCTTCCAATTTGCCAAAAGATCATTAAGATTGTAATTTGTAGAGGGGGTAACATGTACACCAAGAGAGAGCCATGATAAAAATAGAATCTATGAATTTATTTATTTATTTTTTTATAAGAAACTTAAAGATTGTATTCCATATCAAAAGGAGCCCAATAAAAGAGGCAAGAGAACAACCTAGAGGTGGAGGGTCGAGAAGACCCTCCCCAATGGGTCTAAACAATCAAGGAATTCCAACTTTGTAGGATCAACAAAAAAATCTATAAATTTATCAAAAGATATGGATGTGTTGTTGAAGATTCAATTGTTTGGAAAGCCACTATCCAGTTTAAGGCATTTTGAATTATGGACCAATATCTGTTTGAAAAGGGGCACTGTGACTGAAAGATGGCCTTGTGCTTGCCACCTTATAGTATCGGTTGATGGAATATTGACATCGAGCACTCCAATAGATCAATTTGGTAAGCAGATATTTTCATTTTAGAAATTTTAATGCAATAGACTGCGTCGTAAGCAATTCTTCTTGCAAATTGGAGGGATAGATTACAAGTAGCTACTAGGTCACCTTATTCTTAGGAAGAGCCAGCACTGGTTAGGTGTTTTATCAGCTCTCCAATGATGTTTAATATGTTTGCTGTGGTCCTTTGGTCAGGAAATCATCTTCGAGTATAGGAAATCATCTAGTTGATTGACATGAATAGAGTGTGAATTAGTTCGTTATTTAGTTTCTCCTATGAAATCTTGATAATTTGTAGAATTCACAAATTCCCAATGCCCTTGCCCAAAATTTTACTTTTGAACCTGACCTGCTATTGCATGTTTCTTCCTGCTCTTCCAAATTAAAGGATGTTTCCTTCAAGAATATGCAATAGCCAAATGTTGATTTTCTTAATCAGGAGATCCAATATATATAAAAGGCTTCTTAGATAAGCTTATTTCTCTTCTCAACTGGATGCTATTTATTTGGTCCCACAAACTATGATGATCAGGACAATGTACTTAAGATGATAGATTGACTTATATGTGAAGGTGGTTGTATGATAGACATGATGAAATTGCTTGACTATTTGGTGATTACATGCTGAGAAAATAAATAAGGGATAGGGACGGACACTCGAGTTTAACCTGGATAACCAATCTTTAGATAAAAACCATGCTCGGCAATGAACTTATACAAACTCTAAGGCTTACTCAGCCACTGCTACCCTTTGTATTGTGCTGAAGAAGTTTTGAGGTCGGTTTGTTTCTCGTTGAATCATGACATACAATGAACTCCTTTTACTTGTGTGAAAAACTGCAACTTACACTTGTTAGCAATGGTACACAATGTGGCCTAGTAATCAATGATCCTTCAAAACCAACGCTTCTTCTTTGATTTGAAATCCTGATAGAGAAAATTTATATTGAGTTTTTATGGCCAGTTATCCAGTAGAGACCTAATTCTGAACAAAAGCATCAAAGGGAGACTACTACTCGTTTTCTACCTAAAAGTCATGGTTTTTTATCTCATTGTTTGATATTTAGGTCATCTTTTTCTGCACTAGTTGACATTAGTTATCTGGTGGTATGTAAATTTGAGCTTGGAACTAAGTTTTTATCCATAATAATTGGGATTGGATAATTAAATCTGTTAAGCTTTTACTGATTTTTTGTTTCTTCGCAGTCTCTCTTGTAATTTCATAAATCTCAGCTCTTATTAAAAAAATAATACACCATGTGGATTTCATCCTTTATTATGTATGTCCTGTTTTTGAGTATGAAAAATGGATATATTTTGTTTGTCTTCTCTCCAGAAAGTTGATTGAAAATGACCCTTTTTTTATAAAAACTTGAGATCATTTTTGTTACTCAGGATGCTTGTTTTGGTTTCTTTAAGAGTGAACTTCAAATGCAACATTTTGAAATTTTCACTTCAGATTCAGAAAGAATCTTGTTGTAACTTTTTTCTCAACACTTTGACAGAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGGTATGAGTCCTTCCGGAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGGTACACATCTGAATATTTTCCTATAATCTAATATGCTAGGACGACGACAGAAGGTTGGGTTGGGGTTGGGGATGCATTCCCGTCCTCGACCTTGGAGAATCAGTATCAGGGACGAAAAATCCTCACCGAGGGATTGAGGTTTCGTGCAGGAAAAAATCCCCATCCAAGGCAGTTTTGATGGATGGCTTAGCTATTGGGTTTCTATCTGAGATGCTAGTCTTTATGAACATGGACTCGGCTCATCCTGTTTCCATTCTGTTCTAAATTGCAGCTATTAGCAAGCATCTCAGGGACACAGAAAATTTCTGTACCAATGACAATTGTAGTGTCCGGGATAGCGAAGATGTTTGTTGGTGAGCTCGTAGAAACAGGTACGCATAAGCTCGTGTGAAGCATACTTTTCGGTTATTTTAATGGCAATGTGAAGCATAGACAGAAGAATCTGCATATTCCAAAATCGACATCGACTAATTTCGACGCATTTTCTTTTTCAGCAAGAGTTGTTATGACAGAGCGGAATGATACCGGACCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCTAGGCTCTTTCGC ATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCTGCCGCCGACGTTGTCGAAATCCAGACCAATGTAGCCGCTTCCGATGCTCTTGATTCTCACGACGGCGACGATGATCCAAAAGCCGCCACCGCAGCCGCCGCCGCCGTCGCCACACATTCCGGTATCCCTTCTGCACCCACCACTTCTATGTTTGTTTCTTCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGAGGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCCAGCGGTGACCCCGATAAAATGGCGAAGATGCAAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGGTATGAGTCCTTCCGGAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGCTATTAGCAAGCATCTCAGGGACACAGAAAATTTCTGTACCAATGACAATTGTAGTGTCCGGGATAGCGAAGATGTTTGTTGGTGAGCTCGTAGAAACAGCAAGAGTTGTTATGACAGAGCGGAATGATACCGGACCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCTAGGCTCTTTCGC ATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCTGCCGCCGACGTTGTCGAAATCCAGACCAATGTAGCCGCTTCCGATGCTCTTGATTCTCACGACGGCGACGATGATCCAAAAGCCGCCACCGCAGCCGCCGCCGCCGTCGCCACACATTCCGGTATCCCTTCTGCACCCACCACTTCTATGTTTGTTTCTTCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGAGGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCCAGCGGTGACCCCGATAAAATGGCGAAGATGCAAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGGTATGAGTCCTTCCGGAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGCTATTAGCAAGCATCTCAGGGACACAGAAAATTTCTGTACCAATGACAATTGTAGTGTCCGGGATAGCGAAGATGTTTGTTGGTGAGCTCGTAGAAACAGCAAGAGTTGTTATGACAGAGCGGAATGATACCGGACCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCTAGGCTCTTTCGC MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR Homology
BLAST of MS012879 vs. NCBI nr
Match: XP_022152728.1 (transcription initiation factor TFIID subunit 11 [Momordica charantia]) HSP 1 Score: 410.2 bits (1053), Expect = 1.1e-110 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
BLAST of MS012879 vs. NCBI nr
Match: XP_023538856.1 (transcription initiation factor TFIID subunit 11 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 371.3 bits (952), Expect = 5.8e-99 Identity = 208/227 (91.63%), Postives = 217/227 (95.59%), Query Frame = 0
BLAST of MS012879 vs. NCBI nr
Match: XP_023005534.1 (transcription initiation factor TFIID subunit 11 [Cucurbita maxima]) HSP 1 Score: 369.0 bits (946), Expect = 2.9e-98 Identity = 205/227 (90.31%), Postives = 215/227 (94.71%), Query Frame = 0
BLAST of MS012879 vs. NCBI nr
Match: KAG7028341.1 (Transcription initiation factor TFIID subunit 11 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 367.9 bits (943), Expect = 6.4e-98 Identity = 206/227 (90.75%), Postives = 215/227 (94.71%), Query Frame = 0
BLAST of MS012879 vs. NCBI nr
Match: XP_022940909.1 (transcription initiation factor TFIID subunit 11 [Cucurbita moschata]) HSP 1 Score: 367.9 bits (943), Expect = 6.4e-98 Identity = 206/227 (90.75%), Postives = 215/227 (94.71%), Query Frame = 0
BLAST of MS012879 vs. ExPASy Swiss-Prot
Match: Q9M565 (Transcription initiation factor TFIID subunit 11 OS=Arabidopsis thaliana OX=3702 GN=TAF11 PE=1 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 1.2e-54 Identity = 129/225 (57.33%), Postives = 158/225 (70.22%), Query Frame = 0
BLAST of MS012879 vs. ExPASy Swiss-Prot
Match: F4HR03 (Transcription initiation factor TFIID subunit 11b OS=Arabidopsis thaliana OX=3702 GN=TAF11B PE=2 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.0e-38 Identity = 108/225 (48.00%), Postives = 132/225 (58.67%), Query Frame = 0
BLAST of MS012879 vs. ExPASy Swiss-Prot
Match: Q5RA91 (Transcription initiation factor TFIID subunit 11 OS=Pongo abelii OX=9601 GN=TAF11 PE=2 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 8.1e-19 Identity = 79/207 (38.16%), Postives = 113/207 (54.59%), Query Frame = 0
BLAST of MS012879 vs. ExPASy Swiss-Prot
Match: Q99JX1 (Transcription initiation factor TFIID subunit 11 OS=Mus musculus OX=10090 GN=Taf11 PE=1 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 1.4e-18 Identity = 78/207 (37.68%), Postives = 117/207 (56.52%), Query Frame = 0
BLAST of MS012879 vs. ExPASy Swiss-Prot
Match: Q15544 (Transcription initiation factor TFIID subunit 11 OS=Homo sapiens OX=9606 GN=TAF11 PE=1 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.8e-18 Identity = 79/207 (38.16%), Postives = 113/207 (54.59%), Query Frame = 0
BLAST of MS012879 vs. ExPASy TrEMBL
Match: A0A6J1DFN0 (transcription initiation factor TFIID subunit 11 OS=Momordica charantia OX=3673 GN=LOC111020384 PE=3 SV=1) HSP 1 Score: 410.2 bits (1053), Expect = 5.5e-111 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
BLAST of MS012879 vs. ExPASy TrEMBL
Match: A0A6J1KZI1 (transcription initiation factor TFIID subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111498496 PE=3 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98 Identity = 205/227 (90.31%), Postives = 215/227 (94.71%), Query Frame = 0
BLAST of MS012879 vs. ExPASy TrEMBL
Match: A0A6J1FLN4 (transcription initiation factor TFIID subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111446328 PE=3 SV=1) HSP 1 Score: 367.9 bits (943), Expect = 3.1e-98 Identity = 206/227 (90.75%), Postives = 215/227 (94.71%), Query Frame = 0
BLAST of MS012879 vs. ExPASy TrEMBL
Match: A0A0A0L5S4 (TAFII28 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038160 PE=3 SV=1) HSP 1 Score: 353.6 bits (906), Expect = 6.1e-94 Identity = 202/226 (89.38%), Postives = 207/226 (91.59%), Query Frame = 0
BLAST of MS012879 vs. ExPASy TrEMBL
Match: A0A5D3D798 (Transcription initiation factor TFIID subunit 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001040 PE=3 SV=1) HSP 1 Score: 350.9 bits (899), Expect = 3.9e-93 Identity = 200/226 (88.50%), Postives = 207/226 (91.59%), Query Frame = 0
BLAST of MS012879 vs. TAIR 10
Match: AT4G20280.1 (TBP-associated factor 11 ) HSP 1 Score: 214.5 bits (545), Expect = 8.5e-56 Identity = 129/225 (57.33%), Postives = 158/225 (70.22%), Query Frame = 0
BLAST of MS012879 vs. TAIR 10
Match: AT1G20000.1 (TBP-associated factor 11B ) HSP 1 Score: 160.6 bits (405), Expect = 1.5e-39 Identity = 108/225 (48.00%), Postives = 132/225 (58.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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