MS012879 (gene) Bitter gourd (TR) v1

Overview
NameMS012879
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription initiation factor TFIID subunit 11
Locationscaffold38: 51113 .. 54406 (-)
RNA-Seq ExpressionMS012879
SyntenyMS012879
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCTGCCGCCGACGTTGTCGAAATCCAGACCAATGTAGCCGCTTCCGATGCTCTTGATTCTCACGACGGCGACGATGATCCAAAAGCCGCCACCGCAGCCGCCGCCGCCGTCGCCACACATTCCGGTATCCCTTCTGCACCCACCACTTCTATGTTTGTTTCTTCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGAGGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCCAGCGGTGACCCCGATAAAATGGCGAAGATGCAGTATGTTCTCTCCACTCTCTCAATATTCGGGATTAATTTCTGTTTTTAATTGATCATTCTGTTCCAAGTTGCGCTAGTTTAGATTCAATTACCTCTGCCGGTTTCTCTTGTCTGTGATTACGATAATTTTTAGGTTTGACTACAAATTCTGAGCATTGTTCGTGTCTGTAAGAGGGTTTTGTTTTTGTTACTTCATCAAATGTTAGAAAAAGGTTGAAAGCCAAACGCATGTCAAGGTAAATCCTATCGGGGAATGTTAAAACGGCCTTCCAATTTGCCAAAAGATCATTAAGATTGTAATTTGTAGAGGGGGTAACATGTACACCAAGAGAGAGCCATGATAAAAATAGAATCTATGAATTTATTTATTTATTTTTTTATAAGAAACTTAAAGATTGTATTCCATATCAAAAGGAGCCCAATAAAAGAGGCAAGAGAACAACCTAGAGGTGGAGGGTCGAGAAGACCCTCCCCAATGGGTCTAAACAATCAAGGAATTCCAACTTTGTAGGATCAACAAAAAAATCTATAAATTTATCAAAAGATATGGATGTGTTGTTGAAGATTCAATTGTTTGGAAAGCCACTATCCAGTTTAAGGCATTTTGAATTATGGACCAATATCTGTTTGAAAAGGGGCACTGTGACTGAAAGATGGCCTTGTGCTTGCCACCTTATAGTATCGGTTGATGGAATATTGACATCGAGCACTCCAATAGATCAATTTGGTAAGCAGATATTTTCATTTTAGAAATTTTAATGCAATAGACTGCGTCGTAAGCAATTCTTCTTGCAAATTGGAGGGATAGATTACAAGTAGCTACTAGGTCACCTTATTCTTAGGAAGAGCCAGCACTGGTTAGGTGTTTTATCAGCTCTCCAATGATGTTTAATATGTTTGCTGTGGTCCTTTGGTCAGGAAATCATCTTCGAGTATAGGAAATCATCTAGTTGATTGACATGAATAGAGTGTGAATTAGTTCGTTATTTAGTTTCTCCTATGAAATCTTGATAATTTGTAGAATTCACAAATTCCCAATGCCCTTGCCCAAAATTTTACTTTTGAACCTGACCTGCTATTGCATGTTTCTTCCTGCTCTTCCAAATTAAAGGATGTTTCCTTCAAGAATATGCAATAGCCAAATGTTGATTTTCTTAATCAGGAGATCCAATATATATAAAAGGCTTCTTAGATAAGCTTATTTCTCTTCTCAACTGGATGCTATTTATTTGGTCCCACAAACTATGATGATCAGGACAATGTACTTAAGATGATAGATTGACTTATATGTGAAGGTGGTTGTATGATAGACATGATGAAATTGCTTGACTATTTGGTGATTACATGCTGAGAAAATAAATAAGGGATAGGGACGGACACTCGAGTTTAACCTGGATAACCAATCTTTAGATAAAAACCATGCTCGGCAATGAACTTATACAAACTCTAAGGCTTACTCAGCCACTGCTACCCTTTGTATTGTGCTGAAGAAGTTTTGAGGTCGGTTTGTTTCTCGTTGAATCATGACATACAATGAACTCCTTTTACTTGTGTGAAAAACTGCAACTTACACTTGTTAGCAATGGTACACAATGTGGCCTAGTAATCAATGATCCTTCAAAACCAACGCTTCTTCTTTGATTTGAAATCCTGATAGAGAAAATTTATATTGAGTTTTTATGGCCAGTTATCCAGTAGAGACCTAATTCTGAACAAAAGCATCAAAGGGAGACTACTACTCGTTTTCTACCTAAAAGTCATGGTTTTTTATCTCATTGTTTGATATTTAGGTCATCTTTTTCTGCACTAGTTGACATTAGTTATCTGGTGGTATGTAAATTTGAGCTTGGAACTAAGTTTTTATCCATAATAATTGGGATTGGATAATTAAATCTGTTAAGCTTTTACTGATTTTTTGTTTCTTCGCAGTCTCTCTTGTAATTTCATAAATCTCAGCTCTTATTAAAAAAATAATACACCATGTGGATTTCATCCTTTATTATGTATGTCCTGTTTTTGAGTATGAAAAATGGATATATTTTGTTTGTCTTCTCTCCAGAAAGTTGATTGAAAATGACCCTTTTTTTATAAAAACTTGAGATCATTTTTGTTACTCAGGATGCTTGTTTTGGTTTCTTTAAGAGTGAACTTCAAATGCAACATTTTGAAATTTTCACTTCAGATTCAGAAAGAATCTTGTTGTAACTTTTTTCTCAACACTTTGACAGAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGGTATGAGTCCTTCCGGAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGGTACACATCTGAATATTTTCCTATAATCTAATATGCTAGGACGACGACAGAAGGTTGGGTTGGGGTTGGGGATGCATTCCCGTCCTCGACCTTGGAGAATCAGTATCAGGGACGAAAAATCCTCACCGAGGGATTGAGGTTTCGTGCAGGAAAAAATCCCCATCCAAGGCAGTTTTGATGGATGGCTTAGCTATTGGGTTTCTATCTGAGATGCTAGTCTTTATGAACATGGACTCGGCTCATCCTGTTTCCATTCTGTTCTAAATTGCAGCTATTAGCAAGCATCTCAGGGACACAGAAAATTTCTGTACCAATGACAATTGTAGTGTCCGGGATAGCGAAGATGTTTGTTGGTGAGCTCGTAGAAACAGGTACGCATAAGCTCGTGTGAAGCATACTTTTCGGTTATTTTAATGGCAATGTGAAGCATAGACAGAAGAATCTGCATATTCCAAAATCGACATCGACTAATTTCGACGCATTTTCTTTTTCAGCAAGAGTTGTTATGACAGAGCGGAATGATACCGGACCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCTAGGCTCTTTCGC

mRNA sequence

ATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCTGCCGCCGACGTTGTCGAAATCCAGACCAATGTAGCCGCTTCCGATGCTCTTGATTCTCACGACGGCGACGATGATCCAAAAGCCGCCACCGCAGCCGCCGCCGCCGTCGCCACACATTCCGGTATCCCTTCTGCACCCACCACTTCTATGTTTGTTTCTTCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGAGGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCCAGCGGTGACCCCGATAAAATGGCGAAGATGCAAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGGTATGAGTCCTTCCGGAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGCTATTAGCAAGCATCTCAGGGACACAGAAAATTTCTGTACCAATGACAATTGTAGTGTCCGGGATAGCGAAGATGTTTGTTGGTGAGCTCGTAGAAACAGCAAGAGTTGTTATGACAGAGCGGAATGATACCGGACCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCTAGGCTCTTTCGC

Coding sequence (CDS)

ATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCGCCGCCGAACTCCCCCTCTGCCGCCGACGTTGTCGAAATCCAGACCAATGTAGCCGCTTCCGATGCTCTTGATTCTCACGACGGCGACGATGATCCAAAAGCCGCCACCGCAGCCGCCGCCGCCGTCGCCACACATTCCGGTATCCCTTCTGCACCCACCACTTCTATGTTTGTTTCTTCTTCCTCCAATGTCTCTGCCGCCCCTAAAACCAAAGACGACGACGAGGAAGAAGAGGAGGAGAATGTGGAAGTTGAGCTCGCCAAATTCCCCTCCAGCGGTGACCCCGATAAAATGGCGAAGATGCAAGCCATTCTCTCACAATTTACAGAAGAACAGATGAGTCGGTATGAGTCCTTCCGGAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGCTATTAGCAAGCATCTCAGGGACACAGAAAATTTCTGTACCAATGACAATTGTAGTGTCCGGGATAGCGAAGATGTTTGTTGGTGAGCTCGTAGAAACAGCAAGAGTTGTTATGACAGAGCGGAATGATACCGGACCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCTAGGCTCTTTCGC

Protein sequence

MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Homology
BLAST of MS012879 vs. NCBI nr
Match: XP_022152728.1 (transcription initiation factor TFIID subunit 11 [Momordica charantia])

HSP 1 Score: 410.2 bits (1053), Expect = 1.1e-110
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAV 60
           MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAV
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAV 60

Query: 61  ATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQ 120
           ATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQ
Sbjct: 61  ATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQ 120

Query: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180
           AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV
Sbjct: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180

Query: 181 ETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           ETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224

BLAST of MS012879 vs. NCBI nr
Match: XP_023538856.1 (transcription initiation factor TFIID subunit 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 371.3 bits (952), Expect = 5.8e-99
Identity = 208/227 (91.63%), Postives = 217/227 (95.59%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DALD HDGDD+PK  +AAA
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADALDLHDGDDEPK--SAAA 60

Query: 61  AAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMA 120
           AA AT+SGIPSA TTS+FVSSSSNVSAAPKTK+DD+EEEEENVEVELAKFPSSGDPDKMA
Sbjct: 61  AATATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMA 120

Query: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180
           KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG
Sbjct: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180

Query: 181 ELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           ELVETARVVMTERND+G IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225

BLAST of MS012879 vs. NCBI nr
Match: XP_023005534.1 (transcription initiation factor TFIID subunit 11 [Cucurbita maxima])

HSP 1 Score: 369.0 bits (946), Expect = 2.9e-98
Identity = 205/227 (90.31%), Postives = 215/227 (94.71%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DA+D HDGDDDPK    AA
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADAIDLHDGDDDPK---TAA 60

Query: 61  AAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMA 120
           AA AT+SG+PSA TTS+FVSSSSN+SAAPKTK+DD+EEEEENVEVELAKFPSSGDPDKMA
Sbjct: 61  AAAATNSGVPSASTTSLFVSSSSNISAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMA 120

Query: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180
           KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG
Sbjct: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180

Query: 181 ELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           ELVETARVVMTERND+G IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224

BLAST of MS012879 vs. NCBI nr
Match: KAG7028341.1 (Transcription initiation factor TFIID subunit 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367.9 bits (943), Expect = 6.4e-98
Identity = 206/227 (90.75%), Postives = 215/227 (94.71%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DALD HDGDD+PK    +A
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADALDLHDGDDEPK----SA 60

Query: 61  AAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMA 120
           AA AT+SGIPSA TTS+FVSSSSNVSAAPKTK+DD+EEEEENVEVELAKFPSSGDPDKMA
Sbjct: 61  AAAATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMA 120

Query: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180
           KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG
Sbjct: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180

Query: 181 ELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           ELVETARVVMTERND+G IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223

BLAST of MS012879 vs. NCBI nr
Match: XP_022940909.1 (transcription initiation factor TFIID subunit 11 [Cucurbita moschata])

HSP 1 Score: 367.9 bits (943), Expect = 6.4e-98
Identity = 206/227 (90.75%), Postives = 215/227 (94.71%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DALD HDGDD+PK    +A
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPK----SA 60

Query: 61  AAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMA 120
           AA AT+SGIPSA TTS+FVSSSSNVSAAPKTK+DD+EEEEENVEVELAKFPSSGDPDKMA
Sbjct: 61  AAAATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMA 120

Query: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180
           KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG
Sbjct: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180

Query: 181 ELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           ELVETARVVMTERND+G IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223

BLAST of MS012879 vs. ExPASy Swiss-Prot
Match: Q9M565 (Transcription initiation factor TFIID subunit 11 OS=Arabidopsis thaliana OX=3702 GN=TAF11 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-54
Identity = 129/225 (57.33%), Postives = 158/225 (70.22%), Query Frame = 0

Query: 1   MKQSKDPFEAAF-EEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAA 60
           MK SKDPFEAA  EEQEESPP SP         +     +   + D D+ P         
Sbjct: 1   MKHSKDPFEAAIEEEQEESPPESPVGGGGGGDGSEDGRIEIDQTQDEDERP--------- 60

Query: 61  VATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKM 120
           V     +  A  TS+ V+ + N     K KD+D+EEEEEN++VEL K+P+S DP KMAKM
Sbjct: 61  VDVRRPMKKA-KTSVVVTEAKN-----KDKDEDDEEEEENMDVELTKYPTSSDPAKMAKM 120

Query: 121 QAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGEL 180
           Q ILSQFTE+QMSRYESFRR+  Q+  MK+LL  ++G+QKI +PM IV  GIAKMFVGEL
Sbjct: 121 QTILSQFTEDQMSRYESFRRSALQRPQMKKLLIGVTGSQKIGMPMIIVACGIAKMFVGEL 180

Query: 181 VETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           VETARVVM ER ++GPIRPCH+RE+YRRLKLEGK+P++SVPRLFR
Sbjct: 181 VETARVVMAERKESGPIRPCHIRESYRRLKLEGKVPKRSVPRLFR 210

BLAST of MS012879 vs. ExPASy Swiss-Prot
Match: F4HR03 (Transcription initiation factor TFIID subunit 11b OS=Arabidopsis thaliana OX=3702 GN=TAF11B PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-38
Identity = 108/225 (48.00%), Postives = 132/225 (58.67%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAV 60
           MK SKDPFEAA EEQEESP         VE +  +         +GD+            
Sbjct: 32  MKHSKDPFEAAMEEQEESP---------VETEQTL---------EGDE------------ 91

Query: 61  ATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMA-KM 120
                                  A  K K     E +   EVE  K  +  DP   A KM
Sbjct: 92  ----------------------RAVKKCKTSVVAEAKNKDEVEFTKNITGADPVTRANKM 151

Query: 121 QAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGEL 180
           Q ILSQFTEEQMSRYESFRR+GF+K++M++L+  I+G  K+   M IVV GIAKMFVG+L
Sbjct: 152 QKILSQFTEEQMSRYESFRRSGFKKSDMEKLVQRITGGPKMDDTMNIVVRGIAKMFVGDL 204

Query: 181 VETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           VETARVVM ER ++GPIRPCH+RE+YRRLKL+GK+P++SV RLFR
Sbjct: 212 VETARVVMRERKESGPIRPCHIRESYRRLKLQGKVPQRSVQRLFR 204

BLAST of MS012879 vs. ExPASy Swiss-Prot
Match: Q5RA91 (Transcription initiation factor TFIID subunit 11 OS=Pongo abelii OX=9601 GN=TAF11 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.1e-19
Identity = 79/207 (38.16%), Postives = 113/207 (54.59%), Query Frame = 0

Query: 9   EAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPS 68
           E    ++  + P  P A D   I          +  DGD D     AAA      S   S
Sbjct: 14  ETGESDETAAAPGDPGATDTDGIP---------EDTDGDADADLKEAAAEEGELKSQDIS 73

Query: 69  APTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILSQFTE 128
             TT     SS    AA K K D +E++E+  +V         D D++ KMQ ++S F+E
Sbjct: 74  DLTTVEREDSSLLTPAAKKLKIDTKEKKEKKQKV---------DEDEIQKMQILVSSFSE 133

Query: 129 EQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMT 188
           EQ++RYE +RR+ F KA +KRL+ SI+GT  +S  + I +SGI+K+FVGE+VE A  V  
Sbjct: 134 EQLNRYEMYRRSAFPKAAIKRLIQSITGT-SVSQNVVIAMSGISKVFVGEVVEEALDVCE 193

Query: 189 ERNDTGPIRPCHLREAYRRLKLEGKIP 216
           +  +  P++P H+REA RRLK +G+IP
Sbjct: 194 KWGEMPPLQPKHMREAVRRLKSKGQIP 201

BLAST of MS012879 vs. ExPASy Swiss-Prot
Match: Q99JX1 (Transcription initiation factor TFIID subunit 11 OS=Mus musculus OX=10090 GN=Taf11 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-18
Identity = 78/207 (37.68%), Postives = 117/207 (56.52%), Query Frame = 0

Query: 9   EAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPS 68
           E    E+  + P +  AAD   I             DGD D K A A  + + +     S
Sbjct: 14  EPGESEETRATPGALVAADTEGIPEET-------DRDGDADLKEAAAEESELKSQD--VS 73

Query: 69  APTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILSQFTE 128
             T +   +SS    AA K K D ++++E+  +V         D D++ KMQ ++S F+E
Sbjct: 74  DVTAAERENSSLLTPAAKKLKLDIKDKKEKKQKV---------DEDEIQKMQILVSSFSE 133

Query: 129 EQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMT 188
           EQ++RYE +RR+ F KA +KRL+ SI+GT  +S  + I +SGI+K+FVGE+VE A  V  
Sbjct: 134 EQLNRYEMYRRSAFPKAAIKRLIQSITGT-SVSQNVVIAMSGISKVFVGEVVEEALDVCE 193

Query: 189 ERNDTGPIRPCHLREAYRRLKLEGKIP 216
           +  +T P++P H+REA RRLK +G+IP
Sbjct: 194 KWGETPPLQPKHMREAVRRLKSKGQIP 201

BLAST of MS012879 vs. ExPASy Swiss-Prot
Match: Q15544 (Transcription initiation factor TFIID subunit 11 OS=Homo sapiens OX=9606 GN=TAF11 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.8e-18
Identity = 79/207 (38.16%), Postives = 113/207 (54.59%), Query Frame = 0

Query: 9   EAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAVATHSGIPS 68
           E    ++  + P  P A D   I          +  DGD D     AAA      S   S
Sbjct: 14  ETGESDETAAVPGDPGATDTDGIP---------EETDGDADVDLKEAAAEEGELESQDVS 73

Query: 69  APTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQAILSQFTE 128
             TT     SS    AA K K D +E++E+  +V         D D++ KMQ ++S F+E
Sbjct: 74  DLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKV---------DEDEIQKMQILVSSFSE 133

Query: 129 EQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMT 188
           EQ++RYE +RR+ F KA +KRL+ SI+GT  +S  + I +SGI+K+FVGE+VE A  V  
Sbjct: 134 EQLNRYEMYRRSAFPKAAIKRLIQSITGT-SVSQNVVIAMSGISKVFVGEVVEEALDVCE 193

Query: 189 ERNDTGPIRPCHLREAYRRLKLEGKIP 216
           +  +  P++P H+REA RRLK +G+IP
Sbjct: 194 KWGEMPPLQPKHMREAVRRLKSKGQIP 201

BLAST of MS012879 vs. ExPASy TrEMBL
Match: A0A6J1DFN0 (transcription initiation factor TFIID subunit 11 OS=Momordica charantia OX=3673 GN=LOC111020384 PE=3 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 5.5e-111
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAV 60
           MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAV
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAV 60

Query: 61  ATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQ 120
           ATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQ
Sbjct: 61  ATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKMQ 120

Query: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180
           AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV
Sbjct: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180

Query: 181 ETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           ETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224

BLAST of MS012879 vs. ExPASy TrEMBL
Match: A0A6J1KZI1 (transcription initiation factor TFIID subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111498496 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98
Identity = 205/227 (90.31%), Postives = 215/227 (94.71%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DA+D HDGDDDPK    AA
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADAIDLHDGDDDPK---TAA 60

Query: 61  AAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMA 120
           AA AT+SG+PSA TTS+FVSSSSN+SAAPKTK+DD+EEEEENVEVELAKFPSSGDPDKMA
Sbjct: 61  AAAATNSGVPSASTTSLFVSSSSNISAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMA 120

Query: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180
           KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG
Sbjct: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180

Query: 181 ELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           ELVETARVVMTERND+G IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224

BLAST of MS012879 vs. ExPASy TrEMBL
Match: A0A6J1FLN4 (transcription initiation factor TFIID subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111446328 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.1e-98
Identity = 206/227 (90.75%), Postives = 215/227 (94.71%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DALD HDGDD+PK    +A
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPK----SA 60

Query: 61  AAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMA 120
           AA AT+SGIPSA TTS+FVSSSSNVSAAPKTK+DD+EEEEENVEVELAKFPSSGDPDKMA
Sbjct: 61  AAAATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMA 120

Query: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180
           KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG
Sbjct: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180

Query: 181 ELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           ELVETARVVMTERND+G IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223

BLAST of MS012879 vs. ExPASy TrEMBL
Match: A0A0A0L5S4 (TAFII28 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038160 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.1e-94
Identity = 202/226 (89.38%), Postives = 207/226 (91.59%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAAS--DALDSHDGDDDPKAATAAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAAD +EI T VA S  DA D  DGDDDPK     +A
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPSPADAFDLQDGDDDPK-----SA 60

Query: 61  AVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAK 120
           +VATHS  P A TTSMFVSSSS+VS APKTK+DDEEEEEENVEVELAKFPSSGDPDKMAK
Sbjct: 61  SVATHSVAP-ASTTSMFVSSSSHVSTAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAK 120

Query: 121 MQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGE 180
           MQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGE
Sbjct: 121 MQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGE 180

Query: 181 LVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           LVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 LVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 220

BLAST of MS012879 vs. ExPASy TrEMBL
Match: A0A5D3D798 (Transcription initiation factor TFIID subunit 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001040 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.9e-93
Identity = 200/226 (88.50%), Postives = 207/226 (91.59%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVA--ASDALDSHDGDDDPKAATAAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAAD +EI T VA   +DA D  DGDDDPK     +A
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTVAPVPADAFDLQDGDDDPK-----SA 60

Query: 61  AVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAK 120
           +VATHS  P   TTSMFVSSSS+VSAAPKTK+DDEEEEEENVEVELAKFPSSGDPDKMAK
Sbjct: 61  SVATHSVTP-VSTTSMFVSSSSHVSAAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAK 120

Query: 121 MQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGE 180
           MQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGE
Sbjct: 121 MQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGE 180

Query: 181 LVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           LVETARVVMTERND+GPIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 LVETARVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 220

BLAST of MS012879 vs. TAIR 10
Match: AT4G20280.1 (TBP-associated factor 11 )

HSP 1 Score: 214.5 bits (545), Expect = 8.5e-56
Identity = 129/225 (57.33%), Postives = 158/225 (70.22%), Query Frame = 0

Query: 1   MKQSKDPFEAAF-EEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAA 60
           MK SKDPFEAA  EEQEESPP SP         +     +   + D D+ P         
Sbjct: 1   MKHSKDPFEAAIEEEQEESPPESPVGGGGGGDGSEDGRIEIDQTQDEDERP--------- 60

Query: 61  VATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMAKM 120
           V     +  A  TS+ V+ + N     K KD+D+EEEEEN++VEL K+P+S DP KMAKM
Sbjct: 61  VDVRRPMKKA-KTSVVVTEAKN-----KDKDEDDEEEEENMDVELTKYPTSSDPAKMAKM 120

Query: 121 QAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGEL 180
           Q ILSQFTE+QMSRYESFRR+  Q+  MK+LL  ++G+QKI +PM IV  GIAKMFVGEL
Sbjct: 121 QTILSQFTEDQMSRYESFRRSALQRPQMKKLLIGVTGSQKIGMPMIIVACGIAKMFVGEL 180

Query: 181 VETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           VETARVVM ER ++GPIRPCH+RE+YRRLKLEGK+P++SVPRLFR
Sbjct: 181 VETARVVMAERKESGPIRPCHIRESYRRLKLEGKVPKRSVPRLFR 210

BLAST of MS012879 vs. TAIR 10
Match: AT1G20000.1 (TBP-associated factor 11B )

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-39
Identity = 108/225 (48.00%), Postives = 132/225 (58.67%), Query Frame = 0

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAASDALDSHDGDDDPKAATAAAAAV 60
           MK SKDPFEAA EEQEESP         VE +  +         +GD+            
Sbjct: 32  MKHSKDPFEAAMEEQEESP---------VETEQTL---------EGDE------------ 91

Query: 61  ATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMA-KM 120
                                  A  K K     E +   EVE  K  +  DP   A KM
Sbjct: 92  ----------------------RAVKKCKTSVVAEAKNKDEVEFTKNITGADPVTRANKM 151

Query: 121 QAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGEL 180
           Q ILSQFTEEQMSRYESFRR+GF+K++M++L+  I+G  K+   M IVV GIAKMFVG+L
Sbjct: 152 QKILSQFTEEQMSRYESFRRSGFKKSDMEKLVQRITGGPKMDDTMNIVVRGIAKMFVGDL 204

Query: 181 VETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 225
           VETARVVM ER ++GPIRPCH+RE+YRRLKL+GK+P++SV RLFR
Sbjct: 212 VETARVVMRERKESGPIRPCHIRESYRRLKLQGKVPQRSVQRLFR 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022152728.11.1e-110100.00transcription initiation factor TFIID subunit 11 [Momordica charantia][more]
XP_023538856.15.8e-9991.63transcription initiation factor TFIID subunit 11 [Cucurbita pepo subsp. pepo][more]
XP_023005534.12.9e-9890.31transcription initiation factor TFIID subunit 11 [Cucurbita maxima][more]
KAG7028341.16.4e-9890.75Transcription initiation factor TFIID subunit 11 [Cucurbita argyrosperma subsp. ... [more]
XP_022940909.16.4e-9890.75transcription initiation factor TFIID subunit 11 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q9M5651.2e-5457.33Transcription initiation factor TFIID subunit 11 OS=Arabidopsis thaliana OX=3702... [more]
F4HR032.0e-3848.00Transcription initiation factor TFIID subunit 11b OS=Arabidopsis thaliana OX=370... [more]
Q5RA918.1e-1938.16Transcription initiation factor TFIID subunit 11 OS=Pongo abelii OX=9601 GN=TAF1... [more]
Q99JX11.4e-1837.68Transcription initiation factor TFIID subunit 11 OS=Mus musculus OX=10090 GN=Taf... [more]
Q155441.8e-1838.16Transcription initiation factor TFIID subunit 11 OS=Homo sapiens OX=9606 GN=TAF1... [more]
Match NameE-valueIdentityDescription
A0A6J1DFN05.5e-111100.00transcription initiation factor TFIID subunit 11 OS=Momordica charantia OX=3673 ... [more]
A0A6J1KZI11.4e-9890.31transcription initiation factor TFIID subunit 11 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1FLN43.1e-9890.75transcription initiation factor TFIID subunit 11 OS=Cucurbita moschata OX=3662 G... [more]
A0A0A0L5S46.1e-9489.38TAFII28 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038160 PE=... [more]
A0A5D3D7983.9e-9388.50Transcription initiation factor TFIID subunit 11 OS=Cucumis melo var. makuwa OX=... [more]
Match NameE-valueIdentityDescription
AT4G20280.18.5e-5657.33TBP-associated factor 11 [more]
AT1G20000.11.5e-3948.00TBP-associated factor 11B [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 126..215
e-value: 4.0E-32
score: 112.2
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 126..215
IPR006809TAFII28-like protein domainPFAMPF04719TAFII28coord: 122..207
e-value: 3.6E-32
score: 110.3
IPR006809TAFII28-like protein domainCDDcd08048TAF11coord: 126..209
e-value: 5.06199E-41
score: 133.075
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..85
NoneNo IPR availablePANTHERPTHR13218:SF21TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11Bcoord: 1..224
IPR045127Transcription initiation factor TFIID subunit 11-likePANTHERPTHR13218TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATEDcoord: 1..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012879.1MS012879.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051123 RNA polymerase II preinitiation complex assembly
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0046982 protein heterodimerization activity