MS012860 (gene) Bitter gourd (TR) v1

Overview


Name	MS012860
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	C2H2-type domain-containing protein
Location	scaffold63: 4056915 .. 4058229 (-)
RNA-Seq Expression	MS012860
Synteny	MS012860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGAGGAAAACAGAAGATCGAAGCTCAAAAACGAAATGCGGAGAAGAATCAGAAGCCCAAAGGCTCACAACTCGAGGCCAGAGCGGTTGCCCTTAAAGTCATCTGCCCTATTTGCAAGGTTCTTGTTTGTTTCTTTAATCTTTTTTTGCTATCATATGATTCGATTGGATTTGAGTGTTCTTTCGTTTCTTCCAATCTCGATCATAACTTCTTAATCTTATGTTGCCGATCAAACTGTGAAATTTCATATCCGGCGAAGAAATTCTCCTTTTTCCTGCTTGTTTTCTGTTCTAGGTTATGATGGACTGTATATTGCTGTTGTATTGGGTCTCAATTGATAAGAAATTTGTTAGAGTTTGTTCAATTTGGGGTCTCTAAATAAAAAAACCAAAGCATTTTGGTGGATCATTTGTTAAAGGATTTGGTGTAGGACTGGTGGTGGAAGTTGTTATTTTACTAATCATCGTGGGTTTCTTAGTGGAAAGTGCTCAAACCGTAAAATTTAGAATAATAATTTGTTTCGAGCTTAAATCATGGTGGCTTAGCATACTAAATATAGTATAAGGTTGTGTTTATTGTGCGAGATTAGTTGAAATGTGCTTAAGCTTATGATTATTGGGATAAAAGAACTTGATATTCTACATCCAAATCCACAAGTCGAGATTGATTTCTCTTTTCTTTTCCATCTTTGGATTCCTAATTTGTCTGTTCAGTTCAAATCTTTACTTTGAGATGGATTTTCTTGGATGCTAATCATTTCTCTACAAATTAAATGTTTAGCAAGTGGATTGATCTTTTTCTTGGAAGAAATGGAATTGTAGGCTTTTGTGAACTGATCTTTTTCCTGAGAAGTAATGGAATACCCAATTTTTCATTCTTCTCCGTATCATGCTCTTCATACACAATACATACTAGAATCCATGTTTCTCATTTTTCTTGTAGGACTTTGTGAATTGATATTTTTCTTGGGAAGAAATGGAATATACTGGCGTGCGGGTCGAAACCATACAGTCAAAGAGACTAAATATTGAATTAGACATAGAATAGAGTGGAAGAATGGATGGAAAGTAAAGATCCGTTTCCTCTATTTTGATGTTTCATTGTTTCCTAGTTTTATGCATTGTGCATTGTGATGATCTGAACGATTTTTCCTTGCTTTCAGTACTCGAAATTATTTTTCATATTTCCCCCCTCGACCATGCATTGAGATCATCTATTTCTTACCTCAGGTACAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCAAAGGAAAAGCCTCCAGCAGAATCTGGC

mRNA sequence

ATGACCCGAGGAAAACAGAAGATCGAAGCTCAAAAACGAAATGCGGAGAAGAATCAGAAGCCCAAAGGCTCACAACTCGAGGCCAGAGCGGTTGCCCTTAAAGTCATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCAAAGGAAAAGCCTCCAGCAGAATCTGGC

Coding sequence (CDS)

ATGACCCGAGGAAAACAGAAGATCGAAGCTCAAAAACGAAATGCGGAGAAGAATCAGAAGCCCAAAGGCTCACAACTCGAGGCCAGAGCGGTTGCCCTTAAAGTCATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCAAAGGAAAAGCCTCCAGCAGAATCTGGC

Protein sequence

MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPKEKPPAESG

Homology

[Close]

BLAST of MS012860 vs. NCBI nr
Match: KAG6600413.1 (hypothetical protein SDJN03_05646, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031072.1 hypothetical protein SDJN02_05111, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-27
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQKPKGSQ EARAVALKVICPICKVQLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60

Query: 61 EKPPAES 68
          EKPP+ES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of MS012860 vs. NCBI nr
Match: TYK16504.1 (zinc finger protein 706-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 5.2e-27
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLAN NQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60

Query: 61 EKPPAESG 69
          EKPP+ESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of MS012860 vs. NCBI nr
Match: KAG7015122.1 (hypothetical protein SDJN02_22755 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAEKNQK KGSQ EARAVALKVICPICKVQLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60

Query: 61 EKPPAESG 69
          EKPP+ESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of MS012860 vs. NCBI nr
Match: KAG6577120.1 (putative aspartic protease, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1   MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
           MTRGKQKIEAQ+RNAEKNQK KGSQ EARAVALKVICPICKVQLANHNQLGDHYASKHPK
Sbjct: 137 MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 196

Query: 61  EKPPAESG 69
           EKPP+ESG
Sbjct: 197 EKPPSESG 204

[Close]

BLAST of MS012860 vs. NCBI nr
Match: EEF42492.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPAES 68
          EKPP+ES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of MS012860 vs. ExPASy Swiss-Prot
Match: Q5ZMM5 (Zinc finger protein 706 OS=Gallus gallus OX=9031 GN=ZNF706 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPK----GSQLEARAVALKVICPICKVQLANHNQLGDHYAS 60
          M RG+QKI++Q++NA+K  + K      Q  A   AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAEQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPAE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of MS012860 vs. ExPASy Swiss-Prot
Match: Q9Y5V0 (Zinc finger protein 706 OS=Homo sapiens OX=9606 GN=ZNF706 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEK---NQKPKGSQLEARA-VALKVICPICKVQLANHNQLGDHYAS 60
          M RG+QKI++Q++NA+K    +K +G   +A A  AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPAE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of MS012860 vs. ExPASy Swiss-Prot
Match: Q9D115 (Zinc finger protein 706 OS=Mus musculus OX=10090 GN=Znf706 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEK---NQKPKGSQLEARA-VALKVICPICKVQLANHNQLGDHYAS 60
          M RG+QKI++Q++NA+K    +K +G   +A A  AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPAE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of MS012860 vs. ExPASy TrEMBL
Match: A0A5D3CZW8 (Zinc finger protein 706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003120 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-27
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLAN NQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60

Query: 61 EKPPAESG 69
          EKPP+ESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of MS012860 vs. ExPASy TrEMBL
Match: B9S1M3 (C2H2-type domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.4e-27
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLANHNQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPAES 68
          EKPP+ES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of MS012860 vs. ExPASy TrEMBL
Match: M0S062 (C2H2-type domain-containing protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAV LK+ CPICKVQLANHNQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKISCPICKVQLANHNQLMDHYASKHPK 60

Query: 61 EKPPAESG 69
          EKPP+ESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of MS012860 vs. ExPASy TrEMBL
Match: A0A2I0IJ83 (C2H2-type domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_035562 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAE+NQKPK SQLEARAV LKVICPICKVQLANHNQL DHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKASQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 60

Query: 61 EKPPAESG 69
          EKPP+ESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of MS012860 vs. ExPASy TrEMBL
Match: A0A4V6T4H8 (C2H2-type domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb01t18540 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAV LK+ CPICKVQLANHNQL DHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVGLKISCPICKVQLANHNQLMDHYASKHPK 60

Query: 61 EKPPAESG 69
          EKPP+ESG
Sbjct: 61 EKPPSESG 68

The following BLAST results are available for this feature:

BLAST of MS012860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600413.1	3.1e-27	97.01	hypothetical protein SDJN03_05646, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK16504.1	5.2e-27	95.59	zinc finger protein 706-like protein [Cucumis melo var. makuwa]	[more]
KAG7015122.1	1.2e-26	94.12	hypothetical protein SDJN02_22755 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6577120.1	1.2e-26	94.12	putative aspartic protease, partial [Cucurbita argyrosperma subsp. sororia]	[more]
EEF42492.1	1.5e-26	94.03	conserved hypothetical protein [Ricinus communis]	[more]

BLAST of MS012860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZMM5	2.9e-04	37.14	Zinc finger protein 706 OS=Gallus gallus OX=9031 GN=ZNF706 PE=3 SV=1	[more]
Q9Y5V0	2.9e-04	38.57	Zinc finger protein 706 OS=Homo sapiens OX=9606 GN=ZNF706 PE=1 SV=1	[more]
Q9D115	2.9e-04	38.57	Zinc finger protein 706 OS=Mus musculus OX=10090 GN=Znf706 PE=1 SV=1	[more]

BLAST of MS012860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZW8	2.5e-27	95.59	Zinc finger protein 706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
B9S1M3	7.4e-27	94.03	C2H2-type domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0866530 ...	[more]
M0S062	1.1e-25	89.71	C2H2-type domain-containing protein OS=Musa acuminata subsp. malaccensis OX=2146...	[more]
A0A2I0IJ83	1.1e-25	91.18	C2H2-type domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_035562 ...	[more]
A0A4V6T4H8	1.1e-25	89.71	C2H2-type domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb01t18...	[more]

BLAST of MS012860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 1..28 e-value: 1.6E-5 score: 25.7
IPR026939	ZNF706/At2g23090 superfamily	GENE3D	4.10.1050.10		coord: 1..66 e-value: 3.0E-18 score: 68.0
None	No IPR available	PFAM	PF12874	zf-met	coord: 37..57 e-value: 1.1E-4 score: 22.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR21213	GEO09665P1-RELATED	coord: 1..66
None	No IPR available	PANTHER	PTHR21213:SF0	GEO09665P1-RELATED	coord: 1..66
None	No IPR available	SUPERFAMILY	118359	Expressed protein At2g23090/F21P24.15	coord: 1..65
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 37..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012860.1	MS012860.1	mRNA