MS012856 (gene) Bitter gourd (TR) v1

Overview
NameMS012856
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold63: 4039042 .. 4039173 (-)
RNA-Seq ExpressionMS012856
SyntenyMS012856
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGTGAAAGGGAAAGTGATGAGAAAGGTTTTGGGAATGGAAGAAATATTGATGGACTATCATGAGCCAGGGGCCAACCCAAGTCATGAGCCAAGGAAAGGAAGCCCTGGAGGTCGAGCCAGCATCAATCCA

mRNA sequence

ATTGTGAAAGGGAAAGTGATGAGAAAGGTTTTGGGAATGGAAGAAATATTGATGGACTATCATGAGCCAGGGGCCAACCCAAGTCATGAGCCAAGGAAAGGAAGCCCTGGAGGTCGAGCCAGCATCAATCCA

Coding sequence (CDS)

ATTGTGAAAGGGAAAGTGATGAGAAAGGTTTTGGGAATGGAAGAAATATTGATGGACTATCATGAGCCAGGGGCCAACCCAAGTCATGAGCCAAGGAAAGGAAGCCCTGGAGGTCGAGCCAGCATCAATCCA

Protein sequence

IVKGKVMRKVLGMEEILMDYHEPGANPSHEPRKGSPGGRASINP
Homology
BLAST of MS012856 vs. NCBI nr
Match: KAG6600410.1 (hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 7.6e-11
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0

Query: 6  VMRKVLGMEEILMDYHEPGANPSHEPRKGSPGGRASINP 45
          VMRKVLGM+  LMDYHEPGANPSHEPR+GSPGGRAS NP
Sbjct: 43 VMRKVLGMDATLMDYHEPGANPSHEPRRGSPGGRASFNP 81

BLAST of MS012856 vs. NCBI nr
Match: KAG6577122.1 (hypothetical protein SDJN03_24696, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.8 bits (164), Expect = 2.7e-08
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 5  KVMRKVLGMEEILMDYHEPGANPSHEPRKGSPGGRASINP 45
          +V RK+LG E ILMDY+EP ANP HEPRKGSPGGRAS NP
Sbjct: 30 QVTRKLLGNEAILMDYNEPSANPRHEPRKGSPGGRASFNP 69

BLAST of MS012856 vs. NCBI nr
Match: KAA0044962.1 (hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK16508.1 hypothetical protein E5676_scaffold21G003170 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 3  KGKVMRKVLGMEE-ILMDYHEPGANPSHEPRKGSPGGR 40
          KGKVMRK+LG EE ILMDY+EP ANPSHEPR+G+PGGR
Sbjct: 23 KGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

BLAST of MS012856 vs. NCBI nr
Match: KAB1201142.1 (hypothetical protein CJ030_MR0G004811 [Morella rubra])

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-04
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 8  RKVLGMEEILMDYHEPGANPSHEPRKGSPGGRASINP 45
          RK+LG  + L DY  P ANP+HEP+KGSPGG+ S NP
Sbjct: 52 RKLLGRVDTLSDYQYPSANPTHEPKKGSPGGKGSNNP 88

BLAST of MS012856 vs. ExPASy TrEMBL
Match: A0A5A7TNM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003170 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 3  KGKVMRKVLGMEE-ILMDYHEPGANPSHEPRKGSPGGR 40
          KGKVMRK+LG EE ILMDY+EP ANPSHEPR+G+PGGR
Sbjct: 23 KGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

BLAST of MS012856 vs. ExPASy TrEMBL
Match: A0A6A1ULL4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004811 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-04
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 8  RKVLGMEEILMDYHEPGANPSHEPRKGSPGGRASINP 45
          RK+LG  + L DY  P ANP+HEP+KGSPGG+ S NP
Sbjct: 52 RKLLGRVDTLSDYQYPSANPTHEPKKGSPGGKGSNNP 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6600410.17.6e-1187.18hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577122.12.7e-0877.50hypothetical protein SDJN03_24696, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0044962.17.8e-0881.58hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK1650... [more]
KAB1201142.14.0e-0462.16hypothetical protein CJ030_MR0G004811 [Morella rubra][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TNM73.8e-0881.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6A1ULL42.0e-0462.16Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004811 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012856.1MS012856.1mRNA