MS012834 (gene) Bitter gourd (TR) v1

Overview


Name	MS012834
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nipped-B-like protein
Location	scaffold63: 3846641 .. 3847054 (-)
RNA-Seq Expression	MS012834
Synteny	MS012834

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGCAACTTGATTTCAAGCCTGAACAGAAAGCTGCAGGCGGTCGAAATTAGCAATCCCAGTCGCAGAAGACGAACGAAGAAGACGAGTTACGTTTACAGAGACGATTTGAGCAAGAAGAATCAGCCGCCGTCGCCGTCTCAGCGGGAGGCGGAAATCAAGAAAGTGAAGAAGAGAGTGCGATTTGCAGAGACGGAGCCGGTGATAATCGCCATTGACGGAGAGGAACAGAGCGCGGAGGAGGAGGAAACAGAGAAGAAGGCAGTGAGAATTACGGTGAAAATGACGAAGCAAGAAGCGAACCGGATGCTGTCGAGGTGCTCCGATGGCGGCGTTCTCGAATTCAGAGATGTGGCTTGCGAGCTCATGCGGATTCCTGCTGCTCGAGTTACCTCTGCTGTGGTCGCCAAT

mRNA sequence

ATGATCAGCAACTTGATTTCAAGCCTGAACAGAAAGCTGCAGGCGGTCGAAATTAGCAATCCCAGTCGCAGAAGACGAACGAAGAAGACGAGTTACGTTTACAGAGACGATTTGAGCAAGAAGAATCAGCCGCCGTCGCCGTCTCAGCGGGAGGCGGAAATCAAGAAAGTGAAGAAGAGAGTGCGATTTGCAGAGACGGAGCCGGTGATAATCGCCATTGACGGAGAGGAACAGAGCGCGGAGGAGGAGGAAACAGAGAAGAAGGCAGTGAGAATTACGGTGAAAATGACGAAGCAAGAAGCGAACCGGATGCTGTCGAGGTGCTCCGATGGCGGCGTTCTCGAATTCAGAGATGTGGCTTGCGAGCTCATGCGGATTCCTGCTGCTCGAGTTACCTCTGCTGTGGTCGCCAAT

Coding sequence (CDS)

ATGATCAGCAACTTGATTTCAAGCCTGAACAGAAAGCTGCAGGCGGTCGAAATTAGCAATCCCAGTCGCAGAAGACGAACGAAGAAGACGAGTTACGTTTACAGAGACGATTTGAGCAAGAAGAATCAGCCGCCGTCGCCGTCTCAGCGGGAGGCGGAAATCAAGAAAGTGAAGAAGAGAGTGCGATTTGCAGAGACGGAGCCGGTGATAATCGCCATTGACGGAGAGGAACAGAGCGCGGAGGAGGAGGAAACAGAGAAGAAGGCAGTGAGAATTACGGTGAAAATGACGAAGCAAGAAGCGAACCGGATGCTGTCGAGGTGCTCCGATGGCGGCGTTCTCGAATTCAGAGATGTGGCTTGCGAGCTCATGCGGATTCCTGCTGCTCGAGTTACCTCTGCTGTGGTCGCCAAT

Protein sequence

MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQPPSPSQREAEIKKVKKRVRFAETEPVIIAIDGEEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLEFRDVACELMRIPAARVTSAVVAN

Homology

[Close]

BLAST of MS012834 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 191.4 bits (485), Expect = 5.1e-45
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 1   MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQ--PPSPSQREAEIKKVK 60
           MISN I SLN+KLQAVEISN  R RRTKKT+YVYRDDLSKK Q  PPS SQ + EIKKVK
Sbjct: 1   MISNFILSLNKKLQAVEISN--RCRRTKKTTYVYRDDLSKKKQSPPPSSSQPQPEIKKVK 60

Query: 61  KRVRFAETEPVIIAIDGEEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLEFRD 120
           KRVRFA+TEPVIIAI  +E+ + EEETEKK VRITVK+TK+EANRMLSRCSDGGVLEF D
Sbjct: 61  KRVRFADTEPVIIAITDKEERSTEEETEKKVVRITVKLTKEEANRMLSRCSDGGVLEFGD 120

Query: 121 VACELMRIPAARVTSAVVAN 139
           VACELMRIPA RV+S++VAN
Sbjct: 121 VACELMRIPATRVSSSMVAN 138

[Close]

BLAST of MS012834 vs. NCBI nr
Match: KAG7015140.1 (hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 3.3e-44
Identity = 110/138 (79.71%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQPPSPSQREAEIKKVKKR 60
           MI NLISSLN+KLQAVEISN  R RRTKKT+ VYR D+SKK QP  PSQ + EI+KVKKR
Sbjct: 1   MIGNLISSLNKKLQAVEISN--RCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKR 60

Query: 61  VRFAETEPVIIAIDGEEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLEFRDVA 120
           VRFA+TEPVIIAID EE+S  EEETEKK VRITVK+TKQEANRMLSRCSDGGVLEFRDVA
Sbjct: 61  VRFADTEPVIIAIDREERST-EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVA 120

Query: 121 CELMRIPAARVTSAVVAN 139
            ELMRIPAARV+S++V N
Sbjct: 121 SELMRIPAARVSSSMVVN 135

[Close]

BLAST of MS012834 vs. NCBI nr
Match: KAG6577140.1 (hypothetical protein SDJN03_24714, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 109/138 (78.99%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 1   MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQPPSPSQREAEIKKVKKR 60
           MI NLISSLN+KLQAVEISN  R RRTKKT+ VYR D+SKK QP  P Q + EI+KVKKR
Sbjct: 1   MIGNLISSLNKKLQAVEISN--RCRRTKKTTNVYRGDMSKKKQPQLPPQGKPEIEKVKKR 60

Query: 61  VRFAETEPVIIAIDGEEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLEFRDVA 120
           VRFA+TEPVIIAID EE+S  EEETEKK VRITVK+TKQEANRMLSRCSDGGVLEFRDVA
Sbjct: 61  VRFADTEPVIIAIDREERST-EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVA 120

Query: 121 CELMRIPAARVTSAVVAN 139
            ELMRIPAARV+S++V N
Sbjct: 121 SELMRIPAARVSSSMVVN 135

[Close]

BLAST of MS012834 vs. NCBI nr
Match: XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-42
Identity = 109/137 (79.56%), Postives = 120/137 (87.59%), Query Frame = 0


Query: 1   MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQP--PSPSQREAEIKKVK 60
           MI NLISSLN+KLQAVEISN  R RRTKKT+ VYR D+SKK QP  PSPSQ + EI+KVK
Sbjct: 1   MIGNLISSLNKKLQAVEISN--RCRRTKKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVK 60

Query: 61  KRVRFAETEPVIIAIDGEEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLEFRD 120
           KRVRFA+TEPVIIAID EE+S  EEETEKK VRITVK+TKQEANRMLSRCSDGGVLEF D
Sbjct: 61  KRVRFADTEPVIIAIDREERST-EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGD 120

Query: 121 VACELMRIPAARVTSAV 136
           VA ELMRIPAARV+S++
Sbjct: 121 VASELMRIPAARVSSSM 134

[Close]

BLAST of MS012834 vs. NCBI nr
Match: XP_022931429.1 (uncharacterized protein LOC111437608 [Cucurbita moschata])

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-42
Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQPPSPSQREAEIKKVKKR 60
           MI NLISSLN+KLQAVEISN  R RRTKKT+ VYR D+SKK QP  PSQ + EI+KVKKR
Sbjct: 1   MIGNLISSLNKKLQAVEISN--RCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKR 60

Query: 61  VRFAETEPVIIAIDGEEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLEFRDVA 120
           VRFA+TEPVIIAID EE+S  EEETEKK VRITVK+TKQEANRMLSRCSDGGVLEF DVA
Sbjct: 61  VRFADTEPVIIAIDREERST-EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVA 120

Query: 121 CELMRIPAARVTSAV 136
            ELMRIPAARV+S++
Sbjct: 121 SELMRIPAARVSSSM 132

[Close]

BLAST of MS012834 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 109/137 (79.56%), Postives = 120/137 (87.59%), Query Frame = 0


Query: 1   MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQP--PSPSQREAEIKKVK 60
           MI NLISSLN+KLQAVEISN  R RRTKKT+ VYR D+SKK QP  PSPSQ + EI+KVK
Sbjct: 1   MIGNLISSLNKKLQAVEISN--RCRRTKKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVK 60

Query: 61  KRVRFAETEPVIIAIDGEEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLEFRD 120
           KRVRFA+TEPVIIAID EE+S  EEETEKK VRITVK+TKQEANRMLSRCSDGGVLEF D
Sbjct: 61  KRVRFADTEPVIIAIDREERST-EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGD 120

Query: 121 VACELMRIPAARVTSAV 136
           VA ELMRIPAARV+S++
Sbjct: 121 VASELMRIPAARVSSSM 134

[Close]

BLAST of MS012834 vs. ExPASy TrEMBL
Match: A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQPPSPSQREAEIKKVKKR 60
           MI NLISSLN+KLQAVEISN  R RRTKKT+ VYR D+SKK QP  PSQ + EI+KVKKR
Sbjct: 1   MIGNLISSLNKKLQAVEISN--RCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKR 60

Query: 61  VRFAETEPVIIAIDGEEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLEFRDVA 120
           VRFA+TEPVIIAID EE+S  EEETEKK VRITVK+TKQEANRMLSRCSDGGVLEF DVA
Sbjct: 61  VRFADTEPVIIAIDREERST-EEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVA 120

Query: 121 CELMRIPAARVTSAV 136
            ELMRIPAARV+S++
Sbjct: 121 SELMRIPAARVSSSM 132

[Close]

BLAST of MS012834 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.1e-40
Identity = 104/143 (72.73%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQPP-----SPSQREAEIK 60
           MISNLISSLN+KLQAVEISN  R +RTKKT+YVYRDDL+KK   P     SP  + AEIK
Sbjct: 1   MISNLISSLNKKLQAVEISN--RCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIK 60

Query: 61  KVKKRVRFAETEPVIIAIDGEEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLE 120
           KVKKRVRFA+TEPVIIAI  + +  EEEETEKK VRITVK+TKQEANRMLSRCS+ GVLE
Sbjct: 61  KVKKRVRFADTEPVIIAISTDREE-EEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLE 120

Query: 121 FRDVACELMRIPAARVTSAVVAN 139
           F DVA EL+RIP  RV+S++VAN
Sbjct: 121 FGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of MS012834 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.1e-40
Identity = 104/143 (72.73%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQPP-----SPSQREAEIK 60
           MISNLISSLN+KLQAVEISN  R +RTKKT+YVYRDDL+KK   P     SP  + AEIK
Sbjct: 1   MISNLISSLNKKLQAVEISN--RCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIK 60

Query: 61  KVKKRVRFAETEPVIIAIDGEEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLE 120
           KVKKRVRFA+TEPVIIAI  + +  EEEETEKK VRITVK+TKQEANRMLSRCS+ GVLE
Sbjct: 61  KVKKRVRFADTEPVIIAISTDREE-EEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLE 120

Query: 121 FRDVACELMRIPAARVTSAVVAN 139
           F DVA EL+RIP  RV+S++VAN
Sbjct: 121 FGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of MS012834 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.0e-39
Identity = 104/144 (72.22%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MISNLISSLNRKLQAVEISNPSRRRRTKKTSYVYRDDLSKKNQPP-----SPSQREAEIK 60
           MISNLISSLN+KLQAVEIS  SR +RTKKT+YVYRD+L+KKN  P     SP  +  EIK
Sbjct: 1   MISNLISSLNKKLQAVEIS--SRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIK 60

Query: 61  KVKKRVRFAETEPVIIAIDGEEQSAE-EEETEKKAVRITVKMTKQEANRMLSRCSDGGVL 120
           KVKKRVRFA+TEPVIIAI  + +  E E ETEKK VRITVK+TKQEANRMLSRCS+GGVL
Sbjct: 61  KVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVL 120

Query: 121 EFRDVACELMRIPAARVTSAVVAN 139
           EF DVA ELMRIP  RV S++VAN
Sbjct: 121 EFGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of MS012834 vs. TAIR 10
Match: AT4G23880.1 (unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 7.9e-04
Identity = 20/61 (32.79%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 76  EEQSAEEEETEKKAVRITVKMTKQEANRMLSRCSDGGVLEFRDVACELMRIPAARVTSAV 135
           E++S +  E +++ VR+ +KMTK EA R+LS+C +  VL+   +  ++  +P  ++  A+
Sbjct: 120 EKESLKMVEGKEEVVRVKIKMTKHEAQRLLSKCKNDSVLKLEHLMDQIAHVPVHQLQVAM 179

Query: 136 V 137
           V
Sbjct: 180 V 180

The following BLAST results are available for this feature:

BLAST of MS012834 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906331.1	5.1e-45	78.57	uncharacterized protein LOC120092170 [Benincasa hispida]	[more]
KAG7015140.1	3.3e-44	79.71	hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577140.1	1.2e-43	78.99	hypothetical protein SDJN03_24714, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022985430.1	2.4e-42	79.56	uncharacterized protein LOC111483436 [Cucurbita maxima]	[more]
XP_022931429.1	2.4e-42	79.26	uncharacterized protein LOC111437608 [Cucurbita moschata]	[more]

BLAST of MS012834 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012834 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JBA8	1.1e-42	79.56	uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436...	[more]
A0A6J1EU86	1.1e-42	79.26	uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376...	[more]
A0A5D3D246	4.1e-40	72.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BS40	4.1e-40	72.73	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
A0A0A0KYE1	2.0e-39	72.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]

BLAST of MS012834 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23880.1	7.9e-04	32.79	unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 80..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..55
None	No IPR available	PANTHER	PTHR36782:SF1	BNAC03G62080D PROTEIN	coord: 1..136
None	No IPR available	PANTHER	PTHR36782	BNAC03G62080D PROTEIN	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012834.1	MS012834.1	mRNA