MS012801 (gene) Bitter gourd (TR) v1

Overview


Name	MS012801
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold63: 3563725 .. 3563865 (+)
RNA-Seq Expression	MS012801
Synteny	MS012801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGCTTCACGATCGTCCCGCCCACCAAAGAAGAACACAGTTACGATTGACGAGACATTGCTAGCGCAAATGTGGGACCCACCTCCGAGCCCTCGGTCGACTAGGATCCCAACGGAGCATGGTGGTTGTTCTAGAACTTTT

mRNA sequence

AGAGCTTCACGATCGTCCCGCCCACCAAAGAAGAACACAGTTACGATTGACGAGACATTGCTAGCGCAAATGTGGGACCCACCTCCGAGCCCTCGGTCGACTAGGATCCCAACGGAGCATGGTGGTTGTTCTAGAACTTTT

Coding sequence (CDS)

AGAGCTTCACGATCGTCCCGCCCACCAAAGAAGAACACAGTTACGATTGACGAGACATTGCTAGCGCAAATGTGGGACCCACCTCCGAGCCCTCGGTCGACTAGGATCCCAACGGAGCATGGTGGTTGTTCTAGAACTTTT

Protein sequence

RASRSSRPPKKNTVTIDETLLAQMWDPPPSPRSTRIPTEHGGCSRTF

Homology

[Close]

BLAST of MS012801 vs. ExPASy TrEMBL
Match: A0A7C9DM47 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.2e-05
Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 1   RASRSSRPPKKNTVTIDETLLAQMWDPPPSPRSTRIPTEHG 42
           +ASRSS PPKK T   +ETLLA  WD PPSPRSTR  TE G
Sbjct: 94  KASRSSGPPKKKTWITEETLLAATWDEPPSPRSTRRATEQG 134

[Close]

BLAST of MS012801 vs. ExPASy TrEMBL
Match: A0A5K0X5P1 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS4361 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-04
Identity = 28/46 (60.87%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 2  ASRSSRPPKKNTVTIDETLLAQMWDPPPSPRSTRIPTEHGGCSRTF 48
          AS SS PPKK T     T LA  W  PP P STR+PTEHG  SRTF
Sbjct: 3  ASLSSGPPKKKTAIEWATSLAVTWVVPPRPLSTRMPTEHGAFSRTF 48

The following BLAST results are available for this feature:

BLAST of MS012801 vs.


Match Name	E-value	Identity	Description

BLAST of MS012801 vs.


Match Name	E-value	Identity	Description

BLAST of MS012801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7C9DM47	3.2e-05	68.29	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A5K0X5P1	3.6e-04	60.87	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS43...	[more]

BLAST of MS012801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012801.1	MS012801.1	mRNA