MS012780 (gene) Bitter gourd (TR) v1

Overview


Name	MS012780
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S10
Location	scaffold63: 3376210 .. 3377007 (-)
RNA-Seq Expression	MS012780
Synteny	MS012780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTATCTCTTTCAAGGTATAGCCGAACTCAGTTACTCTTAAATTGGATTTTTCCTGATTCAAGGATAATTTTGAAAGTTTATTTGTTTATTGTTGTTACCATTTCAGAGGGAGTCTGTTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAGGTTATAAAGTTGATGCAGAGCTTCAAGTCCAAGGAATATGTTCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTCACCAATGATGGCATTGAGTTCCTCCGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCAACCTTGAAAAAACAAGCCAAGCCAGCTGGTAGGCCCTTTGGCGGACCACCCGGCGATCGCCCACGGTAAATTACCTATTCGTCATGGTTCTTTGTGGATTCATCTGTGCTTTTGGAATGGTGGTTATGGATTTTGTCGTTACAGTCTTAGTATTATAATTGGATGTGTTATTTGTAATGTGATAGTGTAATACAAATGGCTTATTTGAGTAGCTGTTTGTGTAATCTACATCTGCTTTTTTAGTTAGTAGGTTATATTTATTCTTATTAGTATCATGATTGAGTTGTGGTAATTCTTATGAATTAGGGGTCCACCACGTTTTGAGGGCGAGCGGAGGTTTGGTGACCGGGATGGCTACCGTGGAGGTCCTCGTGGACCTGGTGGTGATTTTGGTGGTGACAAGGGTGGAGCACCTGCAGACTACAGGCCTTCTTTTGGG

mRNA sequence

CAGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTATCTCTTTCAAGAGGGAGTCTGTTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAGGTTATAAAGTTGATGCAGAGCTTCAAGTCCAAGGAATATGTTCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTCACCAATGATGGCATTGAGTTCCTCCGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCAACCTTGAAAAAACAAGCCAAGCCAGCTGGTAGGCCCTTTGGCGGACCACCCGGCGATCGCCCACGGGGTCCACCACGTTTTGAGGGCGAGCGGAGGTTTGGTGACCGGGATGGCTACCGTGGAGGTCCTCGTGGACCTGGTGGTGATTTTGGTGGTGACAAGGGTGGAGCACCTGCAGACTACAGGCCTTCTTTTGGG

Coding sequence (CDS)

CAGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTATCTCTTTCAAGAGGGAGTCTGTTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAGGTTATAAAGTTGATGCAGAGCTTCAAGTCCAAGGAATATGTTCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTCACCAATGATGGCATTGAGTTCCTCCGGACTTACCTCAATCTTCCTTCTGAAATTGTCCCTGCAACCTTGAAAAAACAAGCCAAGCCAGCTGGTAGGCCCTTTGGCGGACCACCCGGCGATCGCCCACGGGGTCCACCACGTTTTGAGGGCGAGCGGAGGTTTGGTGACCGGGATGGCTACCGTGGAGGTCCTCGTGGACCTGGTGGTGATTTTGGTGGTGACAAGGGTGGAGCACCTGCAGACTACAGGCCTTCTTTTGGG

Protein sequence

QIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG

Homology

[Close]

BLAST of MS012780 vs. NCBI nr
Match: XP_022136909.1 (40S ribosomal protein S10-1-like [Momordica charantia])

HSP 1 Score: 317.4 bits (812), Expect = 6.9e-83
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERR 121
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERR 121

Query: 122 FGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 156
           FGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG
Sbjct: 122 FGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 155

[Close]

BLAST of MS012780 vs. NCBI nr
Match: GAU20620.1 (hypothetical protein TSUD_230340 [Trifolium subterraneum])

HSP 1 Score: 311.6 bits (797), Expect = 3.8e-81
Identity = 150/154 (97.40%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKS+EYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERR 121
           MHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERR
Sbjct: 62  MHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERR 121

Query: 122 FGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 156
           FGDRDGYRGGPRGPGG+FGG+KGGAPADYRPSFG
Sbjct: 122 FGDRDGYRGGPRGPGGEFGGEKGGAPADYRPSFG 155

[Close]

BLAST of MS012780 vs. NCBI nr
Match: TYK16623.1 (40S ribosomal protein S10-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 311.2 bits (796), Expect = 4.9e-81
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 25  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 84

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE-GER 121
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE GER
Sbjct: 85  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 144

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 156
           RFGDRDGYRGGPRGPGG+FGGDKGGAPADYRPSFG
Sbjct: 145 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFG 179

[Close]

BLAST of MS012780 vs. NCBI nr
Match: XP_004146529.1 (40S ribosomal protein S10-1 [Cucumis sativus] >KGN53350.1 hypothetical protein Csa_014962 [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 4.9e-81
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE-GER 121
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE GER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 156
           RFGDRDGYRGGPRGPGG+FGGDKGGAPADYRPSFG
Sbjct: 122 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFG 156

[Close]

BLAST of MS012780 vs. NCBI nr
Match: XP_008452010.1 (PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 4.9e-81
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE-GER 121
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE GER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 156
           RFGDRDGYRGGPRGPGG+FGGDKGGAPADYRPSFG
Sbjct: 122 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFG 156

[Close]

BLAST of MS012780 vs. ExPASy Swiss-Prot
Match: P0DKK8 (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.1e-70
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           II +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W
Sbjct: 2   IIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPPGDRPRGPPRFEGER 121
            +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GPPGDRPRGPPRFEG+R
Sbjct: 62  QYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDR 121

Query: 122 -RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSF 155
            RFGDRDGYRGGPRG  GDFGG+KGGAPA+++PSF
Sbjct: 122 PRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSF 156

[Close]

BLAST of MS012780 vs. ExPASy Swiss-Prot
Match: P0DKK9 (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.1e-70
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           II +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W
Sbjct: 2   IIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPPGDRPRGPPRFEGER 121
            +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GPPGDRPRGPPRFEG+R
Sbjct: 62  QYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDR 121

Query: 122 -RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSF 155
            RFGDRDGYRGGPRG  GDFGG+KGGAPA+++PSF
Sbjct: 122 PRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSF 156

[Close]

BLAST of MS012780 vs. ExPASy Swiss-Prot
Match: Q9LTF2 (40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2)

HSP 1 Score: 257.7 bits (657), Expect = 8.5e-68
Identity = 128/154 (83.12%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER- 121
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RGP    G+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRP 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSF 155
           RFGDRDGYR GPR  GG+FGG+KGGAPADY+PSF
Sbjct: 122 RFGDRDGYRAGPRA-GGEFGGEKGGAPADYQPSF 154

[Close]

BLAST of MS012780 vs. ExPASy Swiss-Prot
Match: Q9SW09 (40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-67
Identity = 127/154 (82.47%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER- 121
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RGPPR +G+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRP 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSF 155
           RFGDRDGYRGGPRG     G +KGGAPAD++PSF
Sbjct: 122 RFGDRDGYRGGPRG-----GDEKGGAPADFQPSF 150

[Close]

BLAST of MS012780 vs. ExPASy Swiss-Prot
Match: Q9FFS8 (40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.7e-64
Identity = 126/154 (81.82%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFA 61
           IISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 2   IISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFA 61

Query: 62  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER 121
           WMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGPPR +GER
Sbjct: 62  WMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGER 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSF 155
           RFGDRDGYRGGP+  GG++ GDK GAPADY+P F
Sbjct: 122 RFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGF 152

[Close]

BLAST of MS012780 vs. ExPASy TrEMBL
Match: A0A6J1C5N2 (40S ribosomal protein S10-1-like OS=Momordica charantia OX=3673 GN=LOC111008485 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.3e-83
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERR 121
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERR 121

Query: 122 FGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 156
           FGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG
Sbjct: 122 FGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 155

[Close]

BLAST of MS012780 vs. ExPASy TrEMBL
Match: A0A5D3CXK7 (40S ribosomal protein S10-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004510 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.4e-81
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 25  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 84

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE-GER 121
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE GER
Sbjct: 85  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 144

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 156
           RFGDRDGYRGGPRGPGG+FGGDKGGAPADYRPSFG
Sbjct: 145 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFG 179

[Close]

BLAST of MS012780 vs. ExPASy TrEMBL
Match: A0A0A0KUQ3 (S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049090 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.4e-81
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE-GER 121
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE GER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 156
           RFGDRDGYRGGPRGPGG+FGGDKGGAPADYRPSFG
Sbjct: 122 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFG 156

[Close]

BLAST of MS012780 vs. ExPASy TrEMBL
Match: A0A1S3BST3 (40S ribosomal protein S10-1-like OS=Cucumis melo OX=3656 GN=LOC103493145 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.4e-81
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE-GER 121
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE GER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 156
           RFGDRDGYRGGPRGPGG+FGGDKGGAPADYRPSFG
Sbjct: 122 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFG 156

[Close]

BLAST of MS012780 vs. ExPASy TrEMBL
Match: A0A6J1JA51 (40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111483100 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE-GER 121
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFE GER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFG 156
           RFGDRDGYRGGPRGP G+FGGDKGGAPADYRPSFG
Sbjct: 122 RFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFG 156

[Close]

BLAST of MS012780 vs. TAIR 10
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 257.7 bits (657), Expect = 6.0e-69
Identity = 128/154 (83.12%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER- 121
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RGP    G+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRP 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSF 155
           RFGDRDGYR GPR  GG+FGG+KGGAPADY+PSF
Sbjct: 122 RFGDRDGYRAGPRA-GGEFGGEKGGAPADYQPSF 154

[Close]

BLAST of MS012780 vs. TAIR 10
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 257.3 bits (656), Expect = 7.9e-69
Identity = 127/154 (82.47%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER- 121
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGPPGDR RGPPR +G+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRP 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSF 155
           RFGDRDGYRGGPRG     G +KGGAPAD++PSF
Sbjct: 122 RFGDRDGYRGGPRG-----GDEKGGAPADFQPSF 150

[Close]

BLAST of MS012780 vs. TAIR 10
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 244.2 bits (622), Expect = 6.9e-65
Identity = 126/154 (81.82%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFA 61
           IISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 2   IISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFA 61

Query: 62  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER 121
           WMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGPPR +GER
Sbjct: 62  WMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGER 121

Query: 122 RFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSF 155
           RFGDRDGYRGGP+  GG++ GDK GAPADY+P F
Sbjct: 122 RFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGF 152

[Close]

BLAST of MS012780 vs. TAIR 10
Match: AT4G25740.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-52
Identity = 103/153 (67.32%), Postives = 113/153 (73.86%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERR 121
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP G              
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPRG-------------- 121

Query: 122 FGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSF 155
                             G +KGGAPAD++PSF
Sbjct: 122 ------------------GDEKGGAPADFQPSF 122

[Close]

BLAST of MS012780 vs. TAIR 10
Match: AT5G41520.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-45
Identity = 91/109 (83.49%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 46  MQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP 105
           MQSFKSKEYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG 
Sbjct: 1   MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG- 60

Query: 106 PGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSF 155
            GDRPRGPPR +GERRFGDRDGYRGGP+  GG++ GDK GAPADY+P F
Sbjct: 61  GGDRPRGPPRGDGERRFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGF 106

The following BLAST results are available for this feature:

BLAST of MS012780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136909.1	6.9e-83	100.00	40S ribosomal protein S10-1-like [Momordica charantia]	[more]
GAU20620.1	3.8e-81	97.40	hypothetical protein TSUD_230340 [Trifolium subterraneum]	[more]
TYK16623.1	4.9e-81	98.71	40S ribosomal protein S10-1-like [Cucumis melo var. makuwa]	[more]
XP_004146529.1	4.9e-81	98.71	40S ribosomal protein S10-1 [Cucumis sativus] >KGN53350.1 hypothetical protein C...	[more]
XP_008452010.1	4.9e-81	98.71	PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo]	[more]

BLAST of MS012780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DKK8	3.1e-70	85.16	40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 ...	[more]
P0DKK9	3.1e-70	85.16	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 ...	[more]
Q9LTF2	8.5e-68	83.12	40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2	[more]
Q9SW09	1.1e-67	82.47	40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1	[more]
Q9FFS8	9.7e-64	81.82	40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1	[more]

BLAST of MS012780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C5N2	3.3e-83	100.00	40S ribosomal protein S10-1-like OS=Momordica charantia OX=3673 GN=LOC111008485 ...	[more]
A0A5D3CXK7	2.4e-81	98.71	40S ribosomal protein S10-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0KUQ3	2.4e-81	98.71	S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049090...	[more]
A0A1S3BST3	2.4e-81	98.71	40S ribosomal protein S10-1-like OS=Cucumis melo OX=3656 GN=LOC103493145 PE=4 SV...	[more]
A0A6J1JA51	1.2e-80	98.06	40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111483100 PE=...	[more]

BLAST of MS012780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52650.1	6.0e-69	83.12	RNA binding Plectin/S10 domain-containing protein	[more]
AT4G25740.1	7.9e-69	82.47	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.1	6.9e-65	81.82	RNA binding Plectin/S10 domain-containing protein	[more]
AT4G25740.2	1.8e-52	67.32	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.2	1.6e-45	83.49	RNA binding Plectin/S10 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005326	Plectin/S10, N-terminal	PFAM	PF03501	S10_plectin	coord: 3..94 e-value: 7.1E-43 score: 144.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 2..104 e-value: 1.8E-46 score: 158.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..155
None	No IPR available	PANTHER	PTHR12146:SF20	40S RIBOSOMAL PROTEIN S10-1-LIKE	coord: 2..155
IPR037447	40S Ribosomal protein S10	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 2..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012780.1	MS012780.1	mRNA