MS012671 (gene) Bitter gourd (TR) v1

Overview
NameMS012671
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBeta-glucosidase
Locationscaffold63: 2504188 .. 2504298 (-)
RNA-Seq ExpressionMS012671
SyntenyMS012671
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTCATTGTTCGATAGCTTCGCATGGAAATCAAGGTACACTTCAAGATTTGACATTATATATGTTGATTATAAAAACAATCTCAAGAGAGTTCCTAAGATGCCTACCTAT

mRNA sequence

TGGTCATTGTTCGATAGCTTCGCATGGAAATCAAGGTACACTTCAAGATTTGACATTATATATGTTGATTATAAAAACAATCTCAAGAGAGTTCCTAAGATGCCTACCTAT

Coding sequence (CDS)

TGGTCATTGTTCGATAGCTTCGCATGGAAATCAAGGTACACTTCAAGATTTGACATTATATATGTTGATTATAAAAACAATCTCAAGAGAGTTCCTAAGATGCCTACCTAT

Protein sequence

WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY
Homology
[Close]
BLAST of MS012671 vs. NCBI nr
Match: XP_038878230.1 (beta-glucosidase 44-like isoform X2 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 5.6e-07
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WSL D+F W S YTSRF IIYVDYK+NLKRVPKM  Y
Sbjct: 319 WSLLDNFEWLSGYTSRFGIIYVDYKHNLKRVPKMSAY 355

[Close]
BLAST of MS012671 vs. NCBI nr
Match: XP_038878229.1 (beta-glucosidase 44-like isoform X1 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 5.6e-07
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WSL D+F W S YTSRF IIYVDYK+NLKRVPKM  Y
Sbjct: 461 WSLLDNFEWLSGYTSRFGIIYVDYKHNLKRVPKMSAY 497

[Close]
BLAST of MS012671 vs. NCBI nr
Match: XP_022984893.1 (beta-glucosidase 44-like [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 7.3e-07
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WSL D+F W S YTSRF IIYVDYK+NLKR+PKM  Y
Sbjct: 461 WSLLDNFEWLSGYTSRFGIIYVDYKDNLKRIPKMSAY 497

[Close]
BLAST of MS012671 vs. NCBI nr
Match: KAG6577270.1 (Beta-glucosidase 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 7.3e-07
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WSL D+F W S YTSRF IIYVDYK+NLKR+PKM  Y
Sbjct: 348 WSLLDNFEWLSGYTSRFGIIYVDYKDNLKRIPKMSAY 384

[Close]
BLAST of MS012671 vs. NCBI nr
Match: XP_022929533.1 (beta-glucosidase 44-like [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 7.3e-07
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WSL D+F W S YTSRF IIYVDYK+NLKR+PKM  Y
Sbjct: 461 WSLLDNFEWLSGYTSRFGIIYVDYKDNLKRIPKMSAY 497

[Close]
BLAST of MS012671 vs. ExPASy Swiss-Prot
Match: Q9FIU7 (Putative beta-glucosidase 41 OS=Arabidopsis thaliana OX=3702 GN=BGLU41 PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 9.9e-07
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPK 34
           WSL D++ W S YT RF I YVDYKNNL R+PK
Sbjct: 463 WSLLDNWEWNSGYTVRFGIYYVDYKNNLTRIPK 495

[Close]
BLAST of MS012671 vs. ExPASy Swiss-Prot
Match: Q8GXT2 (Beta-glucosidase 29 OS=Arabidopsis thaliana OX=3702 GN=BGLU29 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.3e-06
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPK 34
           WSLFD+F W+  Y SRF + YVD+KNNL+R PK
Sbjct: 463 WSLFDNFEWEHGYNSRFGMYYVDFKNNLQRYPK 495

[Close]
BLAST of MS012671 vs. ExPASy Swiss-Prot
Match: Q0DA21 (Beta-glucosidase 25 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU25 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 2.2e-06
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPK 34
           WSL D++ W S YT RF + Y+DYKNNL R+PK
Sbjct: 452 WSLLDNWEWNSGYTVRFGLYYIDYKNNLTRIPK 484

[Close]
BLAST of MS012671 vs. ExPASy Swiss-Prot
Match: Q9FIW4 (Beta-glucosidase 42 OS=Arabidopsis thaliana OX=3702 GN=BGLU42 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.2e-06
Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WSL D+F W   YT RF ++YVDYKN L R PK   Y
Sbjct: 437 WSLLDNFEWAQGYTKRFGLVYVDYKNGLTRHPKSSAY 473

[Close]
BLAST of MS012671 vs. ExPASy Swiss-Prot
Match: Q9LV34 (Beta-glucosidase 43 OS=Arabidopsis thaliana OX=3702 GN=BGLU43 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 2.2e-06
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKM 35
           WSL D+F W S YTSRF I+YVDYK +LKR PKM
Sbjct: 455 WSLLDNFEWLSGYTSRFGIVYVDYK-DLKRYPKM 487

[Close]
BLAST of MS012671 vs. ExPASy TrEMBL
Match: A0A6J1JBW5 (beta-glucosidase 44-like OS=Cucurbita maxima OX=3661 GN=LOC111483035 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WSL D+F W S YTSRF IIYVDYK+NLKR+PKM  Y
Sbjct: 461 WSLLDNFEWLSGYTSRFGIIYVDYKDNLKRIPKMSAY 497

[Close]
BLAST of MS012671 vs. ExPASy TrEMBL
Match: A0A6J1ESE1 (beta-glucosidase 44-like OS=Cucurbita moschata OX=3662 GN=LOC111436072 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WSL D+F W S YTSRF IIYVDYK+NLKR+PKM  Y
Sbjct: 461 WSLLDNFEWLSGYTSRFGIIYVDYKDNLKRIPKMSAY 497

[Close]
BLAST of MS012671 vs. ExPASy TrEMBL
Match: A0A6P4AZU0 (beta-glucosidase 44-like OS=Ziziphus jujuba OX=326968 GN=LOC107428879 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-07
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WS+ D+F W+S YTSRF I+Y+D+KNNLKR+PK+  Y
Sbjct: 515 WSILDNFEWRSGYTSRFGIVYIDWKNNLKRIPKLSAY 551

[Close]
BLAST of MS012671 vs. ExPASy TrEMBL
Match: A0A6P3YTK4 (beta-glucosidase 44-like isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107404524 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WS+ D+F W+S YTSRF I+Y+D+KNNLKR+PK+  Y
Sbjct: 460 WSIVDNFEWRSGYTSRFGIVYIDWKNNLKRIPKLSAY 496

[Close]
BLAST of MS012671 vs. ExPASy TrEMBL
Match: A0A6P3YY89 (beta-glucosidase 44-like isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107404524 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WS+ D+F W+S YTSRF I+Y+D+KNNLKR+PK+  Y
Sbjct: 359 WSIVDNFEWRSGYTSRFGIVYIDWKNNLKRIPKLSAY 395

[Close]
BLAST of MS012671 vs. TAIR 10
Match: AT5G54570.1 (beta glucosidase 41 )

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-08
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPK 34
           WSL D++ W S YT RF I YVDYKNNL R+PK
Sbjct: 463 WSLLDNWEWNSGYTVRFGIYYVDYKNNLTRIPK 495

[Close]
BLAST of MS012671 vs. TAIR 10
Match: AT2G44470.3 (beta glucosidase 29 )

HSP 1 Score: 52.4 bits (124), Expect = 9.2e-08
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPK 34
           WSLFD+F W+  Y SRF + YVD+KNNL+R PK
Sbjct: 463 WSLFDNFEWEHGYNSRFGMYYVDFKNNLQRYPK 495

[Close]
BLAST of MS012671 vs. TAIR 10
Match: AT3G18070.1 (beta glucosidase 43 )

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-07
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKM 35
           WSL D+F W S YTSRF I+YVDYK +LKR PKM
Sbjct: 455 WSLLDNFEWLSGYTSRFGIVYVDYK-DLKRYPKM 487

[Close]
BLAST of MS012671 vs. TAIR 10
Match: AT3G18070.2 (beta glucosidase 43 )

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-07
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKM 35
           WSL D+F W S YTSRF I+YVDYK +LKR PKM
Sbjct: 378 WSLLDNFEWLSGYTSRFGIVYVDYK-DLKRYPKM 410

[Close]
BLAST of MS012671 vs. TAIR 10
Match: AT5G36890.1 (beta glucosidase 42 )

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-07
Identity = 21/37 (56.76%), Postives = 24/37 (64.86%), Query Frame = 0 

Query: 1   WSLFDSFAWKSRYTSRFDIIYVDYKNNLKRVPKMPTY 38
           WSL D+F W   YT RF ++YVDYKN L R PK   Y
Sbjct: 437 WSLLDNFEWAQGYTKRFGLVYVDYKNGLTRHPKSSAY 473

The following BLAST results are available for this feature:
BLAST of MS012671 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038878230.15.6e-0775.68beta-glucosidase 44-like isoform X2 [Benincasa hispida][more]
XP_038878229.15.6e-0775.68beta-glucosidase 44-like isoform X1 [Benincasa hispida][more]
XP_022984893.17.3e-0772.97beta-glucosidase 44-like [Cucurbita maxima][more]
KAG6577270.17.3e-0772.97Beta-glucosidase 43, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022929533.17.3e-0772.97beta-glucosidase 44-like [Cucurbita moschata][more]
BLAST of MS012671 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FIU79.9e-0766.67Putative beta-glucosidase 41 OS=Arabidopsis thaliana OX=3702 GN=BGLU41 PE=3 SV=2[more]
Q8GXT21.3e-0663.64Beta-glucosidase 29 OS=Arabidopsis thaliana OX=3702 GN=BGLU29 PE=2 SV=2[more]
Q0DA212.2e-0660.61Beta-glucosidase 25 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU25 PE=2 SV=2[more]
Q9FIW42.2e-0656.76Beta-glucosidase 42 OS=Arabidopsis thaliana OX=3702 GN=BGLU42 PE=2 SV=1[more]
Q9LV342.2e-0670.59Beta-glucosidase 43 OS=Arabidopsis thaliana OX=3702 GN=BGLU43 PE=2 SV=2[more]
BLAST of MS012671 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JBW53.5e-0772.97beta-glucosidase 44-like OS=Cucurbita maxima OX=3661 GN=LOC111483035 PE=3 SV=1[more]
A0A6J1ESE13.5e-0772.97beta-glucosidase 44-like OS=Cucurbita moschata OX=3662 GN=LOC111436072 PE=3 SV=1[more]
A0A6P4AZU07.9e-0762.16beta-glucosidase 44-like OS=Ziziphus jujuba OX=326968 GN=LOC107428879 PE=3 SV=1[more]
A0A6P3YTK41.0e-0662.16beta-glucosidase 44-like isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107404524... [more]
A0A6P3YY891.0e-0662.16beta-glucosidase 44-like isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107404524... [more]
BLAST of MS012671 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G54570.17.0e-0866.67beta glucosidase 41 [more]
AT2G44470.39.2e-0863.64beta glucosidase 29 [more]
AT3G18070.11.6e-0770.59beta glucosidase 43 [more]
AT3G18070.21.6e-0770.59beta glucosidase 43 [more]
AT5G36890.11.6e-0756.76beta glucosidase 42 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.20.20.80Glycosidasescoord: 1..37
e-value: 5.3E-10
score: 40.3
IPR001360Glycoside hydrolase family 1PFAMPF00232Glyco_hydro_1coord: 1..34
e-value: 4.5E-8
score: 31.9
IPR017853Glycoside hydrolase superfamilySUPERFAMILY51445(Trans)glycosidasescoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012671.1MS012671.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds