MS012669 (gene) Bitter gourd (TR) v1

Overview
NameMS012669
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold63: 2495300 .. 2495506 (-)
RNA-Seq ExpressionMS012669
SyntenyMS012669
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCATCGGAGCTTCCTACGCCAAAATTCACCTTCTCCAGAAGCAACAGAAGGAGAAGCTCGAGAGAATGGAGGCGTCCCGAGGCGGCAACGCCACTTCCGCCGCCAGCTCCGGCGGCGGTTCCTTCATTGCAAGAAATAACAAAGTTCATCCAGGAAGCATTGCGCCGGCTGCCGCTGCCGACAGCTACAAAAACAGGACA

mRNA sequence

ATGTCGTCCATCGGAGCTTCCTACGCCAAAATTCACCTTCTCCAGAAGCAACAGAAGGAGAAGCTCGAGAGAATGGAGGCGTCCCGAGGCGGCAACGCCACTTCCGCCGCCAGCTCCGGCGGCGGTTCCTTCATTGCAAGAAATAACAAAGTTCATCCAGGAAGCATTGCGCCGGCTGCCGCTGCCGACAGCTACAAAAACAGGACA

Coding sequence (CDS)

ATGTCGTCCATCGGAGCTTCCTACGCCAAAATTCACCTTCTCCAGAAGCAACAGAAGGAGAAGCTCGAGAGAATGGAGGCGTCCCGAGGCGGCAACGCCACTTCCGCCGCCAGCTCCGGCGGCGGTTCCTTCATTGCAAGAAATAACAAAGTTCATCCAGGAAGCATTGCGCCGGCTGCCGCTGCCGACAGCTACAAAAACAGGACA

Protein sequence

MSSIGASYAKIHLLQKQQKEKLERMEASRGGNATSAASSGGGSFIARNNKVHPGSIAPAAAADSYKNRT
Homology
BLAST of MS012669 vs. NCBI nr
Match: KAG6600624.1 (hypothetical protein SDJN03_05857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 7.4e-21
Identity = 61/71 (85.92%), Postives = 63/71 (88.73%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEASR--GGNATSAASSGGGSFIARNNKVHPGSIAP 60
          MSSIGASYAKIHLLQKQQKEKLERMEA R   G A +AASSGGGS +AR NKVHPGSIAP
Sbjct: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGGSLLARKNKVHPGSIAP 60

Query: 61 AAAADSYKNRT 70
          AAAADSYKNRT
Sbjct: 61 AAAADSYKNRT 71

BLAST of MS012669 vs. NCBI nr
Match: KAE8649159.1 (hypothetical protein Csa_014463, partial [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17
Identity = 54/72 (75.00%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEA---SRGGNATSAASSGGGSFIARNNKVHPGSIA 60
          MSS+GASYAKIHLLQKQQKEKLERME    SRG  AT+  SS GGS +ARN KVHPGSIA
Sbjct: 11 MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIA 70

Query: 61 PAAAADSYKNRT 70
          P    DSYKNRT
Sbjct: 71 PTTTVDSYKNRT 82

BLAST of MS012669 vs. NCBI nr
Match: KAG6577271.1 (hypothetical protein SDJN03_24845, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 6.1e-15
Identity = 53/72 (73.61%), Postives = 58/72 (80.56%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEA---SRGGNATSAASSGGGSFIARNNKVHPGSIA 60
          MSSIGASYAKIHLLQKQQK+KLE MEA   SRG  A + +S GGGS +AR+NKVHPGSIA
Sbjct: 1  MSSIGASYAKIHLLQKQQKDKLESMEANRPSRGEAAAATSSGGGGSLLARSNKVHPGSIA 60

Query: 61 PAAAADSYKNRT 70
          P   ADS KNRT
Sbjct: 61 P--VADSNKNRT 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6600624.17.4e-2185.92hypothetical protein SDJN03_05857, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649159.11.7e-1775.00hypothetical protein Csa_014463, partial [Cucumis sativus][more]
KAG6577271.16.1e-1573.61hypothetical protein SDJN03_24845, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..69
NoneNo IPR availablePANTHERPTHR34950:SF2BNAC01G00560D PROTEINcoord: 1..66
NoneNo IPR availablePANTHERPTHR34950OS04G0457400 PROTEINcoord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012669.1MS012669.1mRNA