MS012666 (gene) Bitter gourd (TR) v1

Overview


Name	MS012666
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	18S rRNA aminocarboxypropyltransferase
Location	scaffold63: 2471052 .. 2475757 (+)
RNA-Seq Expression	MS012666
Synteny	MS012666

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCCGAACTCTACTTTATCAATCCGCCTCACAATGAGCCACAACAAGCCAAGACGGTTCAAAAATCATCATCCCCGCCGCGGACAATCCACCCGAGGCCATAAATTTATCGGGTAATTACATTTACAGTTACCCTTTTCTTCTAATCATCCCTTTCTCAGATTGCTCATTTGTTTTAGTTTTCTTTTTCTCTCTCAGAGAGGACGATTGTTTGCCGATCGACCCAGGTGCCTACCTTGACTGACTGAAGTCTTCTTCTATATCTGTTATTTATTTTGTGGTATAAGAAGCTATTACGGTAGAGGGGTTTTTAATTTAGGTGCTTAATGAGTTCTTTCTTTCTCAGCTAATGAAGAGGAGCCAGCGGGTCCAAAAATTCAGCTTGCCATGTGGGTATGTGTAATTGATTCTATTTTTTTAGACCCTTTTGCTAATTCTTGTTATTAGGAAGGAAACTTGAGCTTGAAAAGTTGTACTCAACCTAAAATTGATAGTTTTTCTTATCGTTGATATAGGATTTTGGGCAGTGTGATGCAAAAAGATGTACCGGACGCAAGCTTGCACGATTTGGCTTGCTAAAAGAAAGTACCTATTCTCTCATTTTATTTTCTTCTCATATTTTTATATATGTTGCTCCTTTTGCAAATTAACTGGTCCATGTAGGGATGTCACTGAAGAATTAGTTAGTTTTATATGTTCTATCCACTCTCCCCTTCATTAATGATCATACAAAATGTCTTGTTGGATGCATTGACTTTGTTCTATGTGGACGGGGGAATTCTGAAGATACGTTTCAATGTGATGATTGGTAATAGGAATATGGTGATTTGGGAATGGGAATGGAAGTCGAGTAAAATAAGTTGTATTGTGTTTGCTTGCTAAAGGAAGTATAATGTTAGATGGCTCTATTTCGTTAGCTGGGAGCTCCAATTATAATTTCTAAATTTGGTCTTACAATGCTTCATAAAAATACAAGAAGCAATCTAAAGTTCTTTTAAGCGAGAATCCTTGAAACTCTTATTAACATAGTTTCTGATTGTAAACCAACAAACCAGGTTTAAATCATAAAAATTGGGAAATCAGGGACCAAATAGAAATAGTGAAAATTAAGGAACGAAAAGTTCAATTTTCTTTACTTATTTTTAAGTTGCCTGATCAAATGAGGACGGATGGTTTAAATTTTATATGAATTATCTGGTTCATGCTCATTTGAGATTTTTTATTAAAGCACTCATTTTCCATACAATACAATTAATTTAGTTCTTTCAACATATAAAAGTATTCAATTCTTCTAACTTTCATTGAGCTCATGCAGGATTTGCGTGTTAGCAGTGGTTTTGGAGGCATTGTATTAAGGTATGAAAGCAATTATGTTTCCTAGTATTGTTGTAAGTAAACATTAATTGATGGTAGTTCTATCACAAGAAATTTGTCAACTCATCTTATTTCATCTCTAGTTTTAGGTTTACATAAATAACTTTCCAGAAGTATCAAAGGAATTTTAAACTTGTTTGCTGACCTAATGGAGGGAGGTACTATCAATATTGTTGGGTGTCCCAAATCACCTTTGACACTTTGTGTTTTTATAGAAATCTGTTTGTTTTCAATTTTTTTTTGGGCTGGACTTCTGTGAGGATCTACTTGTGTCTATCCAGCGATTTACCGCCAATCCTTCTAAAATTGTTGCATTGGGATAATGGGCGGTTCCAAGGAACGTGAAGGAGTTGAGAGGTTTCCTTAATTTGACTGGGTGTTAAGGAAAATTTGTTGCCAATTACGGTGCAGTTGTTCTCCCTCTTGTCTAACAACTCAAGAAAGATGTATTCACAGGAAGACGGCTGCCACAATTGTTTTTGCCTTTTTGGACAATCCAAAGTTGCAATGTCATCCTTTCCTATGTATTTGGGAGGACATTTAAAACAAAAATGAAGAAACCAACTTCCATTGAGATGCGGCATGGGTCCCACTGATAACCGAGTCATGTAACTAATTGATGGGTGGGAAAGATGCATGGTGAGCTAAGTCTGTAATATTTAGTAAATATAGATTACACGTAGCATAAGAGGTACGTTTTGGGTTACGAATCTTGTGTTTGTGAGGGAAGGAGAGCTCTTGAGTCATCCCCAATCAATGTATCTCTCTATTGTTGTTAACCGATAGAGAATCTATCATATTTCTAATTATCCTTTTATTATGAGTCTATGACCCACCTTCACAATGTTATTATGGCTTGATGAGAAAAGATGAATTGTATTGATTTAAATTCTCACAGAAAGTCTTATGAACTTTTTGTTGGTCCCTATCTTTATCCTCTTCAACCTGAAAATTTTGGCAGTCCAGTGGGAGTGAATTGTGTCTCGAAAGAAGATCAAAGCCTTCTTAAACAAAAAGGATTAGCGGTTGTGGATTGCTCATGGGCACGCCTTGGTGATGTTCCATTTGTGAAGTTGCGCTGCTCTGCTCCTCGCCTATGTAAGATATTTGATTCTTTAATACGGAAATCTCATATTGTTTTTAACATTGCTGTTTTATGAATTTTAATACTTTAATAAACTGCAATCGAGATTTCACTCTGGCTAGATTCAATCTGGTTTACAATGACTATTAATTTAATTATATCATGGTTAATTCTCTTGGTTCTGTTTTTCAACTTCGGCAAATTTTTTGGTGAAATGTTTGTAGTACCTTGGCTAGTAGCGGCAAACCCAGTAAATTATGGTCGACCGTGTGAGTTATCTTGTGTGGAAGCGTTAGCAGCTGCTCTAATCATATGGTAACCACATCCTCCATCTCTTCCCTTCCCATGTGTATCAGTTGGTTTCTCACTGATTCTGCTGAGGTTTATGCGAATTACTAATCTCATTTCATTGTATATTCCTTTGTCATATATTTGGTGTAATTAATTGGTTTACATTTGATAATTGAGAAAAAAAAAAAGTGAATCTCTGGTTCTCTTGGTGGTATCTTTTAGTGGGATCTTGAACTTCCGATGTGTTTTATTATGGAAGGAAGTAGTCAACTACCACGAGTTGGTTGAGTAGTCACTTAAGCTAGTGAAAAATTTAAGGATTCAGAGGAAATGAATTCAAACCATGGCACAAAAGAAGCAGTAGTTGTTTAGTTTGTTAAAATGACATTTTTATATTTTGAGCAAGGTTGTCGAGTTAGTTAAAAGGCAAGTCAGCAAGCTCGTTAGGGATCGTAGTTGCAATTGTAAATAAATAGAGGTCGGTGGGATAGAATGGTTGGAAATTAGTCGGGACTTTCGCCCCCAAGGGGCAGCCCGGTTGCCAGGGATTTGGAGTCTCTTGGTCATACTAACTTAGAGGTCTCAATTTTGAACTTTACAGTGAGCCTAATACCAAAAACTCTTGATGCCTCCCGGGTCAGAGTCTTGGGACAGGCACAGGTGTCCTTGGGTTTAGGGGAGCAAAGCTCCGACTCCTATTTATCAAAAAAGAGAAATATATATATATATATATATATTAGTCAGGACTTTCGTGAGTTCTCAGGTCCTTGAAATCCTGTAATCTTTCCAGGCAGTAATTCTTCTTTAGCAATTTTTTACTTTTAGAGATTGTAAGTAGAATAGAGTAATGCTCAGTCATTCTTCTTTATCACTTTTTATAGCTGGAAATGGTGATTGTTTGTTGGAGCAAGCATTCTATCCATTTTGTTTAACCATTTTCTATTGACCTGAACTAACAGTGGGGAACAGGAAACAGCAGACCTGTTGCTTAGCAAGTTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGGTACATTTTATTTACTTTATAACACTATAGCTAAACATATAATTTAGTCCGACTCGTTTTTCGATTTTGTTCCTAATCTTTCGAAAGTTTAGTGCTACAGAACGACATCAAATATATTTTATTAGTTGGGTTTGAAATACTTTTAGTTTTAATTTGATAAGACAGGCCAATTTATCCATAGAATTGGAAATCCCCTAGCATCATACAAGATAGCCTCGATACAGGCAAAGTCGAAGAAGAACAAGAAGAATTTAAATTCACACCATCATTTTGCGTTAAAAACGAAATTGAAACTGATTAGGGACAAAATTGAGAGATGCCATATAGACCCTCAGATTTAAAGTTTTGAGGCAAAAAACATCGAGGACTGAATCATTGAAGTCATAAAAGGAGTTGAAGGCTTGAAAATTGGTATTGTCTGAGCTTTATCCATGTGAATGCTTGCTAAGTTTCTGGTGTTTATGTGACACAGAGAGCTTCTAAAAAAGTACTCGGCATGTGAGAATAGTGCCGATATTATTTCGGTCCAGAATGCTTGGCTATCACAACAAAGCCAGGTCCCCAAACAACTGCATAATGTACAAGGTATTCTTTTGAACTAACTGCATCACTTTCTTGTTTGTTTTGCTTGCACCTTATTTGAATAATTCTGGACGCTCTCGACCACAACTTACAAAACCAACTATTAAATTGAATTGAAATCGAACCGAGCGAACTGAGACCATAAATATCTATTTAACTAATTGATAAGGATATTTCTTTCGCTTTTAACTTGAAAGAACGGCGATTCAGATGTTGCAGGTGCAGAAGAGTCATCTGTGAGCCGAGACGACGAGGGCTCCGATGACTCTGGCGATGGACTTCCGCCATTGGAGAAGAATCTGAACCACTTGATCTTGCAAGAAGACAGTGATGAAGAAAGCGAG

mRNA sequence

AACCCGAACTCTACTTTATCAATCCGCCTCACAATGAGCCACAACAAGCCAAGACGGTTCAAAAATCATCATCCCCGCCGCGGACAATCCACCCGAGGCCATAAATTTATCGGAGAGGACGATTGTTTGCCGATCGACCCAGCTAATGAAGAGGAGCCAGCGGGTCCAAAAATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATGCAAAAAGATGTACCGGACGCAAGCTTGCACGATTTGGCTTGCTAAAAGAAAGTACCTATTCTCTCATTTTATTTTCTTCTCATATTTTTATATATCTCATGCAGGATTTGCGTGTTAGCAGTGGTTTTGGAGGCATTGTATTAAGTCCAGTGGGAGTGAATTGTGTCTCGAAAGAAGATCAAAGCCTTCTTAAACAAAAAGGATTAGCGGTTGTGGATTGCTCATGGGCACGCCTTGGTGATGTTCCATTTGTGAAGTTGCGCTGCTCTGCTCCTCGCCTATTACCTTGGCTAGTAGCGGCAAACCCAGTAAATTATGGTCGACCGTGTGAGTTATCTTGTGTGGAAGCGTTAGCAGCTGCTCTAATCATATGTGGGGAACAGGAAACAGCAGACCTGTTGCTTAGCAAGTTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGAGAGCTTCTAAAAAAGTACTCGGCATGTGAGAATAGTGCCGATATTATTTCGGTCCAGAATGCTTGGCTATCACAACAAAGCCAGGTCCCCAAACAACTGCATAATGTACAAGGTGCAGAAGAGTCATCTGTGAGCCGAGACGACGAGGGCTCCGATGACTCTGGCGATGGACTTCCGCCATTGGAGAAGAATCTGAACCACTTGATCTTGCAAGAAGACAGTGATGAAGAAAGCGAG

Coding sequence (CDS)

AACCCGAACTCTACTTTATCAATCCGCCTCACAATGAGCCACAACAAGCCAAGACGGTTCAAAAATCATCATCCCCGCCGCGGACAATCCACCCGAGGCCATAAATTTATCGGAGAGGACGATTGTTTGCCGATCGACCCAGCTAATGAAGAGGAGCCAGCGGGTCCAAAAATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATGCAAAAAGATGTACCGGACGCAAGCTTGCACGATTTGGCTTGCTAAAAGAAAGTACCTATTCTCTCATTTTATTTTCTTCTCATATTTTTATATATCTCATGCAGGATTTGCGTGTTAGCAGTGGTTTTGGAGGCATTGTATTAAGTCCAGTGGGAGTGAATTGTGTCTCGAAAGAAGATCAAAGCCTTCTTAAACAAAAAGGATTAGCGGTTGTGGATTGCTCATGGGCACGCCTTGGTGATGTTCCATTTGTGAAGTTGCGCTGCTCTGCTCCTCGCCTATTACCTTGGCTAGTAGCGGCAAACCCAGTAAATTATGGTCGACCGTGTGAGTTATCTTGTGTGGAAGCGTTAGCAGCTGCTCTAATCATATGTGGGGAACAGGAAACAGCAGACCTGTTGCTTAGCAAGTTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGAGAGCTTCTAAAAAAGTACTCGGCATGTGAGAATAGTGCCGATATTATTTCGGTCCAGAATGCTTGGCTATCACAACAAAGCCAGGTCCCCAAACAACTGCATAATGTACAAGGTGCAGAAGAGTCATCTGTGAGCCGAGACGACGAGGGCTCCGATGACTCTGGCGATGGACTTCCGCCATTGGAGAAGAATCTGAACCACTTGATCTTGCAAGAAGACAGTGATGAAGAAAGCGAG

Protein sequence

NPNSTLSIRLTMSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQLHNVQGAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE

Homology

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BLAST of MS012666 vs. NCBI nr
Match: XP_022136904.1 (ribosome biogenesis protein TSR3 homolog [Momordica charantia])

HSP 1 Score: 524.6 bits (1350), Expect = 5.4e-145
Identity = 265/289 (91.70%), Postives = 265/289 (91.70%), Query Frame = 0


Query: 12  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 71
           MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK
Sbjct: 1   MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 60

Query: 72  RCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQS 131
           RCTGRKLARFGLLK                   DLRVSSGFGGIVLSPVGVNCVSKEDQS
Sbjct: 61  RCTGRKLARFGLLK-------------------DLRVSSGFGGIVLSPVGVNCVSKEDQS 120

Query: 132 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 191
           LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL
Sbjct: 121 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 180

Query: 192 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 251
           IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL
Sbjct: 181 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 240

Query: 252 HNVQ---GAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
           HNVQ   GAEE SVSRDDEGSDDS DGLPPLEKNLNHLILQEDSDEESE
Sbjct: 241 HNVQDVAGAEEPSVSRDDEGSDDSDDGLPPLEKNLNHLILQEDSDEESE 270

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BLAST of MS012666 vs. NCBI nr
Match: XP_038896612.1 (18S rRNA aminocarboxypropyltransferase [Benincasa hispida])

HSP 1 Score: 503.4 bits (1295), Expect = 1.3e-138
Identity = 249/286 (87.06%), Postives = 259/286 (90.56%), Query Frame = 0


Query: 12  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 71
           MSHNKPRRFKNHHPRRGQSTRGHKFIGED+CLPIDPAN+EEP  PKIQLAMWDFGQCDAK
Sbjct: 1   MSHNKPRRFKNHHPRRGQSTRGHKFIGEDECLPIDPANDEEPTSPKIQLAMWDFGQCDAK 60

Query: 72  RCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQS 131
           RCTGRKLARFGLLK                   DLRV+SGFGGIVLSPVGVNCVSKED+S
Sbjct: 61  RCTGRKLARFGLLK-------------------DLRVNSGFGGIVLSPVGVNCVSKEDRS 120

Query: 132 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 191
           LLKQKGLAVVDCSWARLGDVPFVKLRC+APRLLPWLVAANPVNYGRPCELSCVEALAAAL
Sbjct: 121 LLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 180

Query: 192 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 251
           IICGE ETADLLLSKFKWGHAFLSVNRELLK+YSACENSADIISVQNAWLSQQ QVPK+ 
Sbjct: 181 IICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEP 240

Query: 252 HNVQGAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
           HNV+GAE+SSVS DDEGSDDS DGLPPLEKNLNHL LQ+DSDEESE
Sbjct: 241 HNVEGAEKSSVSEDDEGSDDSEDGLPPLEKNLNHLTLQQDSDEESE 267

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BLAST of MS012666 vs. NCBI nr
Match: XP_011653126.1 (ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus] >XP_031745814.1 ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 489.2 bits (1258), Expect = 2.5e-134
Identity = 242/286 (84.62%), Postives = 253/286 (88.46%), Query Frame = 0


Query: 12  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 71
           MSHNK RRFKNHHPRRGQSTRGHKFIGED+CLP+DPANEEEP  P I LAMWDFGQCDAK
Sbjct: 1   MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 60

Query: 72  RCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQS 131
           RCTGRKLARFGLLK                   DLRV+SGFGGIVLSPVGVNCVSKED S
Sbjct: 61  RCTGRKLARFGLLK-------------------DLRVNSGFGGIVLSPVGVNCVSKEDHS 120

Query: 132 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 191
           LLKQKGLAVVDCSWARLGDVPFVKLRC+APRLLPWLVAANPVNYGRPCELSCVEALAAAL
Sbjct: 121 LLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 180

Query: 192 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 251
           IICGE ETADLLL KFKWGHAFLSVNRELLK+YSACENSADIISVQNAWLSQQ QVPK+ 
Sbjct: 181 IICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEP 240

Query: 252 HNVQGAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
           HNV+GA++SSVS  DEGSDDS DGLPPLEKNLNHL LQ++SDEESE
Sbjct: 241 HNVEGADKSSVSEHDEGSDDSEDGLPPLEKNLNHLTLQQESDEESE 267

[Close]

BLAST of MS012666 vs. NCBI nr
Match: XP_008453772.1 (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 488.8 bits (1257), Expect = 3.3e-134
Identity = 243/286 (84.97%), Postives = 254/286 (88.81%), Query Frame = 0


Query: 12  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 71
           MSHNKPRRFKNHHPRRGQSTRGHKFIGED+ LP+DPANEEEP  P IQLAMWDFGQCDAK
Sbjct: 1   MSHNKPRRFKNHHPRRGQSTRGHKFIGEDEFLPVDPANEEEPTRPNIQLAMWDFGQCDAK 60

Query: 72  RCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQS 131
           RCTGRKLARFGLLK                   DLRV+SGFGGIVLSPVGVNCVSKED S
Sbjct: 61  RCTGRKLARFGLLK-------------------DLRVNSGFGGIVLSPVGVNCVSKEDHS 120

Query: 132 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 191
           LLKQKGLAVVDCSWARLGDVPFVKLRC+APRLLPWLVAANPVNYGRPCELSCVEALAAAL
Sbjct: 121 LLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 180

Query: 192 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 251
           IICGE ETADLLLSKFKWGHAFLSVNRELLK+YSACENSADIISVQNAWLSQQ QVPK+ 
Sbjct: 181 IICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEP 240

Query: 252 HNVQGAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
           HNV+GA++SSVS  DE SDDS DGLPPLEKNLNHL LQ++SDEESE
Sbjct: 241 HNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 267

[Close]

BLAST of MS012666 vs. NCBI nr
Match: XP_031740208.1 (LOW QUALITY PROTEIN: ribosome biogenesis protein TSR3 homolog [Cucumis sativus])

HSP 1 Score: 487.6 bits (1254), Expect = 7.4e-134
Identity = 241/286 (84.27%), Postives = 253/286 (88.46%), Query Frame = 0


Query: 12  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 71
           MSHNK RRFKNHHPRRGQSTRGHKFIGED+CLP+DPANEEEP  P I LAMWDFGQCDAK
Sbjct: 1   MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 60

Query: 72  RCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQS 131
           RCTGRKLARFGLLK                   DLRV+SGFGGIVLSPVGVNCVSKED S
Sbjct: 61  RCTGRKLARFGLLK-------------------DLRVNSGFGGIVLSPVGVNCVSKEDHS 120

Query: 132 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 191
           LLK+KGLAVVDCSWARLGDVPFVKLRC+APRLLPWLVAANPVNYGRPCELSCVEALAAAL
Sbjct: 121 LLKKKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 180

Query: 192 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 251
           IICGE ETADLLL KFKWGHAFLSVNRELLK+YSACENSADIISVQNAWLSQQ QVPK+ 
Sbjct: 181 IICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEP 240

Query: 252 HNVQGAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
           HNV+GA++SSVS  DEGSDDS DGLPPLEKNLNHL LQ++SDEESE
Sbjct: 241 HNVEGADKSSVSEHDEGSDDSEDGLPPLEKNLNHLTLQQESDEESE 267

[Close]

BLAST of MS012666 vs. ExPASy Swiss-Prot
Match: Q5HZH2 (18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.3e-52
Identity = 104/211 (49.29%), Postives = 131/211 (62.09%), Query Frame = 0


Query: 45  IDPANEEEPAGP-----KIQLAMWDFGQCDAKRCTGRKLARFGLLKESTYSLILFSSHIF 104
           + P   E+  GP        LAMW+ G CD KRCTGRKLAR GL++              
Sbjct: 40  VQPEEAEDQGGPGPAALPCALAMWELGHCDPKRCTGRKLARLGLVR-------------- 99

Query: 105 IYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQSLLKQKGLAVVDCSWARLGDVPFVKLRCS 164
                 LR+S  FGG+VLSPVG   VS  D+ L+ Q G+AV+DCSWA+L D PF K+R S
Sbjct: 100 -----CLRLSQRFGGLVLSPVGTEYVSPADRQLVAQSGVAVIDCSWAKLDDTPFQKMRGS 159

Query: 165 APRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEQETADLLLSKFKWGHAFLSVNRE 224
             RLLP+LVAANPVNYGRPC+LSCVEA AAA  I G  + A +LL KFKWG  FL +NRE
Sbjct: 160 HLRLLPYLVAANPVNYGRPCKLSCVEAFAAAFCIVGFSDLAVILLRKFKWGKGFLDLNRE 219

Query: 225 LLKKYSACENSADIISVQNAWLSQQSQVPKQ 251
           LL KY+AC    +++  +  +L+     P++
Sbjct: 220 LLDKYAACRGPEEVLQAEQGYLASTRDTPEE 231

[Close]

BLAST of MS012666 vs. ExPASy Swiss-Prot
Match: Q9UJK0 (18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.9e-47
Identity = 96/198 (48.48%), Postives = 124/198 (62.63%), Query Frame = 0


Query: 53  PAGPKIQLAMWDFGQCDAKRCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGF 112
           PA     LAMW+ G CD +RCTGRKLAR GL++                    LR+   F
Sbjct: 53  PAALPCTLAMWELGHCDPRRCTGRKLARLGLVR-------------------CLRLGHRF 112

Query: 113 GGIVLSPVGVNCVSKEDQSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANP 172
           GG+VLSPVG    S  D+ L+ Q G+AV+DCSWARL + PF K+R S  RLLP+LVAANP
Sbjct: 113 GGLVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLPYLVAANP 172

Query: 173 VNYGRPCELSCVEALAAALIICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSAD 232
           VNYGRP  LSCVEA AA   I G  + A +LL KFKWG  FL +NR+LL KY+AC +  +
Sbjct: 173 VNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYAACGSPEE 231

Query: 233 IISVQNAWLSQQSQVPKQ 251
           ++  +  +L+   + P++
Sbjct: 233 VLQAEQEFLANAKESPQE 231

[Close]

BLAST of MS012666 vs. ExPASy Swiss-Prot
Match: Q12094 (18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR3 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.1e-42
Identity = 98/229 (42.79%), Postives = 126/229 (55.02%), Query Frame = 0


Query: 15  NKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAKRCT 74
           NK    KN  P+RG    GH        + +   N E+   P ++LAMWDF  CD KRC+
Sbjct: 6   NKMHEPKNGRPQRG--ANGHSSRQNHRRMEMKYDNSEKMKFP-VKLAMWDFDHCDPKRCS 65

Query: 75  GRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQSLLK 134
           G+KL R GL+K                    LRV   F GIV+SP G   V  +D  +++
Sbjct: 66  GKKLERLGLIK-------------------SLRVGQKFQGIVVSPNGKGVVCPDDLEIVE 125

Query: 135 QKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAALIIC 194
           Q G +VV+CSWARL +VPF K+     RLLP+LVAAN VNYGRP  L+CVEALAA   I 
Sbjct: 126 QHGASVVECSWARLEEVPFNKIGGKHERLLPYLVAANQVNYGRPWRLNCVEALAACFAIV 185

Query: 195 GEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQ 244
           G  + A  LLS F WG  FL +N+ELL+ Y  C +   +   +  WL +
Sbjct: 186 GRMDWASELLSHFSWGMGFLELNKELLEIYQQCTDCDSVKRAEEEWLQK 212

[Close]

BLAST of MS012666 vs. ExPASy Swiss-Prot
Match: Q10409 (18S rRNA aminocarboxypropyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tsr3 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.0e-37
Identity = 77/196 (39.29%), Postives = 111/196 (56.63%), Query Frame = 0


Query: 58  IQLAMWDFGQCDAKRCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVL 117
           + LAMWDFG C+   C+G++L R G ++                   +LR+   F G+V+
Sbjct: 27  LPLAMWDFGHCNPNACSGKRLERLGCVR-------------------NLRIGQKFRGVVI 86

Query: 118 SPVGVNCVSKEDQSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGR 177
           +P G   VS  D+      G +VV+CSWAR+ ++PF ++     RLLP+LVA+NPVNYGR
Sbjct: 87  TPNGKVPVSPADKEYFDNGGASVVECSWARIEEIPFSRIGGRCERLLPYLVASNPVNYGR 146

Query: 178 PCELSCVEALAAALIICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQ 237
           P  L+C EALAA + I G    A LL+  FKWGH+F  VN ELL  Y+ C ++ DI   +
Sbjct: 147 PWRLNCAEALAACMYIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKE 203

Query: 238 NAWLSQQSQVPKQLHN 254
             +L +     ++  N
Sbjct: 207 KKYLEEMEASYQEQRN 203

[Close]

BLAST of MS012666 vs. ExPASy Swiss-Prot
Match: Q8PSK5 (16S rRNA aminocarboxypropyltransferase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) OX=192952 GN=MM_3074 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.0e-29
Identity = 71/185 (38.38%), Postives = 107/185 (57.84%), Query Frame = 0


Query: 58  IQLAMWDFGQCDAKRCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVL 117
           I L ++  GQCD K+CTGRK+ARF L +                 + D         I+L
Sbjct: 9   IPLYIYHAGQCDPKKCTGRKMARFELAR-----------------LYDRISRLPRSAILL 68

Query: 118 SPVGVNCVSKEDQSLLKQKGLAVVDCSWARLGDV-PFVKLRCSAPRLLPWLVAANPVNYG 177
            P+    +S  D     +KG+ V+DCSW  +  V P ++      R LP+++A NPVN+G
Sbjct: 69  DPMAEKALSPADD---PKKGIIVLDCSWEEVERVFPELEKLNLEHRALPYMLAGNPVNFG 128

Query: 178 RPCELSCVEALAAALIICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISV 237
           RP +L+  EA AAAL I G +E A+ ++SKF WGH+FL +NRE L++YS  +NS +I+ +
Sbjct: 129 RPFKLNSAEAFAAALYILGYKEQAEKVMSKFNWGHSFLELNREPLEEYSTAKNSTEIVEI 173

Query: 238 QNAWL 242
           Q+ ++
Sbjct: 189 QSHYI 173

[Close]

BLAST of MS012666 vs. ExPASy TrEMBL
Match: A0A6J1C5M7 (18S rRNA aminocarboxypropyltransferase OS=Momordica charantia OX=3673 GN=LOC111008482 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 2.6e-145
Identity = 265/289 (91.70%), Postives = 265/289 (91.70%), Query Frame = 0


Query: 12  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 71
           MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK
Sbjct: 1   MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 60

Query: 72  RCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQS 131
           RCTGRKLARFGLLK                   DLRVSSGFGGIVLSPVGVNCVSKEDQS
Sbjct: 61  RCTGRKLARFGLLK-------------------DLRVSSGFGGIVLSPVGVNCVSKEDQS 120

Query: 132 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 191
           LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL
Sbjct: 121 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 180

Query: 192 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 251
           IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL
Sbjct: 181 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 240

Query: 252 HNVQ---GAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
           HNVQ   GAEE SVSRDDEGSDDS DGLPPLEKNLNHLILQEDSDEESE
Sbjct: 241 HNVQDVAGAEEPSVSRDDEGSDDSDDGLPPLEKNLNHLILQEDSDEESE 270

[Close]

BLAST of MS012666 vs. ExPASy TrEMBL
Match: A0A0A0KXU5 (18S rRNA aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G031030 PE=3 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.2e-136
Identity = 249/304 (81.91%), Postives = 266/304 (87.50%), Query Frame = 0


Query: 1   NPNSTLSIRLTMSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQL 60
           +PN T    L MSHNK RRFKNHHPRRGQSTRGHKFIGED+CLP+DPANEEEP  P I L
Sbjct: 83  SPNPTSLNCLRMSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHL 142

Query: 61  AMWDFGQCDAKRCTGRKLARFGLLKESTYSLIL--FSSHIFIYLMQ-----DLRVSSGFG 120
           AMWDFGQCDAKRCTGRKLARFGLLKE     ++  F+S +     +     DLRV+SGFG
Sbjct: 143 AMWDFGQCDAKRCTGRKLARFGLLKEHAGENLMDGFASQVENVQNEELSKCDLRVNSGFG 202

Query: 121 GIVLSPVGVNCVSKEDQSLLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPV 180
           GIVLSPVGVNCVSKED SLLKQKGLAVVDCSWARLGDVPFVKLRC+APRLLPWLVAANPV
Sbjct: 203 GIVLSPVGVNCVSKEDHSLLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPV 262

Query: 181 NYGRPCELSCVEALAAALIICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADI 240
           NYGRPCELSCVEALAAALIICGE ETADLLL KFKWGHAFLSVNRELLK+YSACENSADI
Sbjct: 263 NYGRPCELSCVEALAAALIICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADI 322

Query: 241 ISVQNAWLSQQSQVPKQLHNVQGAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSD 298
           ISVQNAWLSQQ QVPK+ HNV+GA++SSVS  DEGSDDS DGLPPLEKNLNHL LQ++SD
Sbjct: 323 ISVQNAWLSQQRQVPKEPHNVEGADKSSVSEHDEGSDDSEDGLPPLEKNLNHLTLQQESD 382

[Close]

BLAST of MS012666 vs. ExPASy TrEMBL
Match: A0A1S3BX27 (18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 PE=3 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.6e-134
Identity = 243/286 (84.97%), Postives = 254/286 (88.81%), Query Frame = 0


Query: 12  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 71
           MSHNKPRRFKNHHPRRGQSTRGHKFIGED+ LP+DPANEEEP  P IQLAMWDFGQCDAK
Sbjct: 1   MSHNKPRRFKNHHPRRGQSTRGHKFIGEDEFLPVDPANEEEPTRPNIQLAMWDFGQCDAK 60

Query: 72  RCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQS 131
           RCTGRKLARFGLLK                   DLRV+SGFGGIVLSPVGVNCVSKED S
Sbjct: 61  RCTGRKLARFGLLK-------------------DLRVNSGFGGIVLSPVGVNCVSKEDHS 120

Query: 132 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 191
           LLKQKGLAVVDCSWARLGDVPFVKLRC+APRLLPWLVAANPVNYGRPCELSCVEALAAAL
Sbjct: 121 LLKQKGLAVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 180

Query: 192 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 251
           IICGE ETADLLLSKFKWGHAFLSVNRELLK+YSACENSADIISVQNAWLSQQ QVPK+ 
Sbjct: 181 IICGEGETADLLLSKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEP 240

Query: 252 HNVQGAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
           HNV+GA++SSVS  DE SDDS DGLPPLEKNLNHL LQ++SDEESE
Sbjct: 241 HNVEGADKSSVSEHDEDSDDSEDGLPPLEKNLNHLTLQQESDEESE 267

[Close]

BLAST of MS012666 vs. ExPASy TrEMBL
Match: A0A6J1J6L0 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111483038 PE=3 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.7e-134
Identity = 244/286 (85.31%), Postives = 253/286 (88.46%), Query Frame = 0


Query: 12  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 71
           MSHNKPRRFKNHHPRRGQS+RGHKFIGED+CLPIDP NEEE A PKIQLAMWDFGQCDAK
Sbjct: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60

Query: 72  RCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQS 131
           RCTGRKLARFGLLK                   DLRV+SGFGGIVLSPVGVNCVSKED S
Sbjct: 61  RCTGRKLARFGLLK-------------------DLRVNSGFGGIVLSPVGVNCVSKEDHS 120

Query: 132 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 191
           LLKQ+GLAVVDCSWARLGDVPFVKLRC APRLLPWLVAANPVNYGRPCELSCVEALAAAL
Sbjct: 121 LLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 180

Query: 192 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 251
           IICGE ETADLLL KFKWGHAFLSVNRELLK+YSACENSADIISVQNAWLSQQ QVPK+ 
Sbjct: 181 IICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEP 240

Query: 252 HNVQGAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
             V+GAE+SSVS DDEGSDDS DGLPPLEKNLNHL LQ+DSDEESE
Sbjct: 241 RIVEGAEKSSVSEDDEGSDDSEDGLPPLEKNLNHLTLQQDSDEESE 267

[Close]

BLAST of MS012666 vs. ExPASy TrEMBL
Match: A0A6J1ETU0 (18S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111435889 PE=3 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.3e-133
Identity = 242/286 (84.62%), Postives = 253/286 (88.46%), Query Frame = 0


Query: 12  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAK 71
           MSHNKPRRFKNHHPRRGQS+RGHKFIGED+CLPIDP NEEE A PKIQLAMWDFGQCDAK
Sbjct: 1   MSHNKPRRFKNHHPRRGQSSRGHKFIGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60

Query: 72  RCTGRKLARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQS 131
           RCTGRKLARFGLLK                   DLRV+SGFGGIVLSPVGVNCVSKED S
Sbjct: 61  RCTGRKLARFGLLK-------------------DLRVNSGFGGIVLSPVGVNCVSKEDHS 120

Query: 132 LLKQKGLAVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 191
           LLKQ+GLAVVDCSWARLGDVPFVKLRC APRLLPWLVAANPVNYGRPCELSCVEALAAAL
Sbjct: 121 LLKQRGLAVVDCSWARLGDVPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALAAAL 180

Query: 192 IICGEQETADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQL 251
           IICGE ETADLLL KFKWGHAFLSVNRELLK+YSACENSADIISVQN+WLSQQ QVPK+ 
Sbjct: 181 IICGEGETADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQNSWLSQQRQVPKEP 240

Query: 252 HNVQGAEESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
             ++GAE+SSVS DDEGSDDS DGLPPLEKNLNHL LQ+DSDEESE
Sbjct: 241 RVLEGAEKSSVSEDDEGSDDSEDGLPPLEKNLNHLTLQQDSDEESE 267

[Close]

BLAST of MS012666 vs. TAIR 10
Match: AT5G10070.1 (RNase L inhibitor protein-related )

HSP 1 Score: 355.1 bits (910), Expect = 5.3e-98
Identity = 174/279 (62.37%), Postives = 214/279 (76.70%), Query Frame = 0


Query: 21  KNHHPRRGQSTRGH--KFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAKRCTGRKL 80
           K++  + G S+RG       ED+ LP+D   E+E   PK+QLAMWDFGQCDAKRCTGRKL
Sbjct: 5   KHNRSKGGNSSRGRTDNLAREDESLPLDQEPEDEAPVPKVQLAMWDFGQCDAKRCTGRKL 64

Query: 81  ARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQSLLKQKGL 140
           ARF LLKE                   LRV++GFGG+VLSPVG  CVS+ED  L+K+KGL
Sbjct: 65  ARFNLLKE-------------------LRVNTGFGGVVLSPVGRQCVSREDYDLIKRKGL 124

Query: 141 AVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEQE 200
           AVVDCSWARL DVPF KLRC+APRLLPWLVAANPVNYGRPCELSCVEAL+AALI+CGE+E
Sbjct: 125 AVVDCSWARLTDVPFAKLRCTAPRLLPWLVAANPVNYGRPCELSCVEALSAALILCGEKE 184

Query: 201 TADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQLHNVQGAE 260
           TA+LLL KFKWGHAFLS+N+++LK+YS CENSA+IISVQN+WL+QQ+Q+PKQ   ++   
Sbjct: 185 TAELLLGKFKWGHAFLSLNKDILKEYSKCENSAEIISVQNSWLTQQTQIPKQPPALEEHV 244

Query: 261 ESSVSRDDEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
           +      DE  +D  DGLPPLE+N+NH+ L++  +E+SE
Sbjct: 245 KKDGESGDESEEDDEDGLPPLERNMNHIKLEDSEEEDSE 264

[Close]

BLAST of MS012666 vs. TAIR 10
Match: AT5G10070.2 (RNase L inhibitor protein-related )

HSP 1 Score: 354.8 bits (909), Expect = 6.9e-98
Identity = 177/283 (62.54%), Postives = 217/283 (76.68%), Query Frame = 0


Query: 21  KNHHPRRGQSTRGH--KFIGEDDCLPIDPANEEEPAGPKIQLAMWDFGQCDAKRCTGRKL 80
           K++  + G S+RG       ED+ LP+D   E+E   PK+QLAMWDFGQCDAKRCTGRKL
Sbjct: 5   KHNRSKGGNSSRGRTDNLAREDESLPLDQEPEDEAPVPKVQLAMWDFGQCDAKRCTGRKL 64

Query: 81  ARFGLLKESTYSLILFSSHIFIYLMQDLRVSSGFGGIVLSPVGVNCVSKEDQSLLKQKGL 140
           ARF LLKE                   LRV++GFGG+VLSPVG  CVS+ED  L+K+KGL
Sbjct: 65  ARFNLLKE-------------------LRVNTGFGGVVLSPVGRQCVSREDYDLIKRKGL 124

Query: 141 AVVDCSWARLGDVPFVKLRCSAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEQE 200
           AVVDCSWARL DVPF KLRC+APRLLPWLVAANPVNYGRPCELSCVEAL+AALI+CGE+E
Sbjct: 125 AVVDCSWARLTDVPFAKLRCTAPRLLPWLVAANPVNYGRPCELSCVEALSAALILCGEKE 184

Query: 201 TADLLLSKFKWGHAFLSVNRELLKKYSACENSADIISVQNAWLSQQSQVPKQLHNVQGAE 260
           TA+LLL KFKWGHAFLS+N+++LK+YS CENSA+IISVQN+WL+QQ+Q+PKQ   ++  E
Sbjct: 185 TAELLLGKFKWGHAFLSLNKDILKEYSKCENSAEIISVQNSWLTQQTQIPKQPPALE--E 244

Query: 261 ESSVSRD----DEGSDDSGDGLPPLEKNLNHLILQEDSDEESE 298
              V +D    DE  +D  DGLPPLE+N+NH+ L++  +E+SE
Sbjct: 245 RKDVKKDGESGDESEEDDEDGLPPLERNMNHIKLEDSEEEDSE 266

The following BLAST results are available for this feature:

BLAST of MS012666 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136904.1	5.4e-145	91.70	ribosome biogenesis protein TSR3 homolog [Momordica charantia]	[more]
XP_038896612.1	1.3e-138	87.06	18S rRNA aminocarboxypropyltransferase [Benincasa hispida]	[more]
XP_011653126.1	2.5e-134	84.62	ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus] >XP_031745...	[more]
XP_008453772.1	3.3e-134	84.97	PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo]	[more]
XP_031740208.1	7.4e-134	84.27	LOW QUALITY PROTEIN: ribosome biogenesis protein TSR3 homolog [Cucumis sativus]	[more]

BLAST of MS012666 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5HZH2	3.3e-52	49.29	18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=...	[more]
Q9UJK0	1.9e-47	48.48	18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1	[more]
Q12094	3.1e-42	42.79	18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
Q10409	3.0e-37	39.29	18S rRNA aminocarboxypropyltransferase OS=Schizosaccharomyces pombe (strain 972 ...	[more]
Q8PSK5	3.0e-29	38.38	16S rRNA aminocarboxypropyltransferase OS=Methanosarcina mazei (strain ATCC BAA-...	[more]

BLAST of MS012666 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C5M7	2.6e-145	91.70	18S rRNA aminocarboxypropyltransferase OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0KXU5	2.2e-136	81.91	18S rRNA aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G03103...	[more]
A0A1S3BX27	1.6e-134	84.97	18S rRNA aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103494403 P...	[more]
A0A6J1J6L0	4.7e-134	85.31	18S rRNA aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC1114830...	[more]
A0A6J1ETU0	2.3e-133	84.62	18S rRNA aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of MS012666 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10070.1	5.3e-98	62.37	RNase L inhibitor protein-related	[more]
AT5G10070.2	6.9e-98	62.54	RNase L inhibitor protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007209	RNase L inhibitor RLI-like, possible metal-binding domain	PFAM	PF04068	RLI	coord: 59..85 e-value: 2.8E-12 score: 46.2
IPR007177	16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminal	PFAM	PF04034	Ribo_biogen_C	coord: 115..241 e-value: 5.2E-52 score: 174.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..297
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..31
IPR022968	16S/18S rRNA aminocarboxypropyltransferase Tsr3	PANTHER	PTHR20426	RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG	coord: 12..293
IPR022968	16S/18S rRNA aminocarboxypropyltransferase Tsr3	HAMAP	MF_01116	TSR3	coord: 59..242 score: 38.63393

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012666.1	MS012666.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0016740	transferase activity