MS012645 (gene) Bitter gourd (TR) v1

Overview


Name	MS012645
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Histone H3
Location	scaffold63: 2283487 .. 2284209 (-)
RNA-Seq Expression	MS012645
Synteny	MS012645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCAGATGGCCCGTACCAAGCAAACTGCTCGTAAGTCTACTGGAGGGAAGGCTCCCAGGAAGCAACTGGCCACCAAGGTTTGCTCAATTTCCTTGTGCAATAACTTTAATGAATTTGATTGAGTTTGATTAATTGAATTAACTTTGCTGTTAATTTATGTTGTTGGTATTCTAGGCCGCCCGTAAGTCAGCCCCAACTACAGGAGGGGTGAAGAAGCCTCACAGATACCGCCCTGGTACTGTTGCTCTTCGGTAAGTTTGCATGGTCTTTCTCTTCTTGCCTTACCACCCTTGGAGATGTGCTTATACTCCGTTGGATGCAGCAAACAAGTGATTCACTTCTTTCTTCCTTGTGAATTCGTGCAGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTCTTGATTAGGAAGTTGCCATTCCAGAGGTTGGTTCGTGAAATTGCCCAGGACTTCAAGGTATGTCCTTTATCTTCTGCTTGATGATCTGATTTAAGCTTTGTGCTCTGCTGGGTTCGATGTAGCATTAAGGTTTTTGCGTTAATTTTTTTGTGCAGACTGATCTGCGTTTCCAGAGCCACGCTGTTCTGGCTCTGCAAGAGGCAGCTGAGGCATACCTTGTTGGGTTGTTCGAGGACACCAATCTGTGCGCCATCCACGCCAAGCGTGTTACCATAATGCCCAAAGATATCCAGTTGGCTAGGAGAATCAGGGGTGAACGTGCT

mRNA sequence

TTGCAGATGGCCCGTACCAAGCAAACTGCTCGTAAGTCTACTGGAGGGAAGGCTCCCAGGAAGCAACTGGCCACCAAGGCCGCCCGTAAGTCAGCCCCAACTACAGGAGGGGTGAAGAAGCCTCACAGATACCGCCCTGGTACTGTTGCTCTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTCTTGATTAGGAAGTTGCCATTCCAGAGGTTGGTTCGTGAAATTGCCCAGGACTTCAAGACTGATCTGCGTTTCCAGAGCCACGCTGTTCTGGCTCTGCAAGAGGCAGCTGAGGCATACCTTGTTGGGTTGTTCGAGGACACCAATCTGTGCGCCATCCACGCCAAGCGTGTTACCATAATGCCCAAAGATATCCAGTTGGCTAGGAGAATCAGGGGTGAACGTGCT

Coding sequence (CDS)

TTGCAGATGGCCCGTACCAAGCAAACTGCTCGTAAGTCTACTGGAGGGAAGGCTCCCAGGAAGCAACTGGCCACCAAGGCCGCCCGTAAGTCAGCCCCAACTACAGGAGGGGTGAAGAAGCCTCACAGATACCGCCCTGGTACTGTTGCTCTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTCTTGATTAGGAAGTTGCCATTCCAGAGGTTGGTTCGTGAAATTGCCCAGGACTTCAAGACTGATCTGCGTTTCCAGAGCCACGCTGTTCTGGCTCTGCAAGAGGCAGCTGAGGCATACCTTGTTGGGTTGTTCGAGGACACCAATCTGTGCGCCATCCACGCCAAGCGTGTTACCATAATGCCCAAAGATATCCAGTTGGCTAGGAGAATCAGGGGTGAACGTGCT

Protein sequence

LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Homology

[Close]

BLAST of MS012645 vs. NCBI nr
Match: XP_027074927.1 (histone H3.3 isoform X1 [Coffea arabica])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 3   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 62

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 63  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 122

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 123 TIMPKDIQLARRIRGERA 140

[Close]

BLAST of MS012645 vs. NCBI nr
Match: XP_023002730.1 (histone H3.3 isoform X1 [Cucurbita maxima] >XP_023537221.1 histone H3.3 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.2 bits (661), Expect = 2.0e-65
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 3   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 62

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 63  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 122

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 123 TIMPKDIQLARRIRGERA 140

[Close]

BLAST of MS012645 vs. NCBI nr
Match: XP_022997287.1 (histone H3.3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 259.2 bits (661), Expect = 2.0e-65
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 12  IQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 71

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 72  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 131

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 132 TIMPKDIQLARRIRGERA 149

[Close]

BLAST of MS012645 vs. NCBI nr
Match: XP_022951614.1 (histone H3.3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 259.2 bits (661), Expect = 2.0e-65
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 1   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 121 TIMPKDIQLARRIRGERA 138

[Close]

BLAST of MS012645 vs. NCBI nr
Match: KAG6585308.1 (O-fucosyltransferase 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 591 VQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 650

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 651 TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 710

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 711 TIMPKDIQLARRIRGERA 728

[Close]

BLAST of MS012645 vs. ExPASy Swiss-Prot
Match: P59169 (Histone H3.3 OS=Arabidopsis thaliana OX=3702 GN=HTR4 PE=1 SV=2)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of MS012645 vs. ExPASy Swiss-Prot
Match: Q6RUR1 (Histone H3.3 OS=Capsicum annuum OX=4072 PE=2 SV=3)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of MS012645 vs. ExPASy Swiss-Prot
Match: Q71V89 (Histone H3.3 OS=Gossypium hirsutum OX=3635 GN=HIS3 PE=2 SV=3)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of MS012645 vs. ExPASy Swiss-Prot
Match: Q3C2E5 (Histone H3.3 OS=Lolium multiflorum OX=4521 GN=RH3 PE=2 SV=3)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of MS012645 vs. ExPASy Swiss-Prot
Match: P69245 (Histone H3.3 OS=Lolium temulentum OX=34176 PE=2 SV=2)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of MS012645 vs. ExPASy TrEMBL
Match: A0A6P6TAN2 (Histone H3 OS=Coffea arabica OX=13443 GN=LOC113699066 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.6e-66
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 3   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 62

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 63  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 122

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 123 TIMPKDIQLARRIRGERA 140

[Close]

BLAST of MS012645 vs. ExPASy TrEMBL
Match: A0A6J1KPT2 (Histone H3 OS=Cucurbita maxima OX=3661 GN=LOC111496502 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.6e-66
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 3   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 62

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 63  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 122

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 123 TIMPKDIQLARRIRGERA 140

[Close]

BLAST of MS012645 vs. ExPASy TrEMBL
Match: A0A6J1K4K6 (Histone H3 OS=Cucurbita maxima OX=3661 GN=LOC111492236 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.6e-66
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 12  IQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 71

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 72  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 131

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 132 TIMPKDIQLARRIRGERA 149

[Close]

BLAST of MS012645 vs. ExPASy TrEMBL
Match: A0A6J1GJA9 (Histone H3 OS=Cucurbita moschata OX=3662 GN=LOC111454375 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.6e-66
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 1   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 121 TIMPKDIQLARRIRGERA 138

[Close]

BLAST of MS012645 vs. ExPASy TrEMBL
Match: A0A2K3NFE2 (Histone H3 OS=Trifolium pratense OX=57577 GN=histone H3 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           L+MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 3   LEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 62

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 63  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 122

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 123 TIMPKDIQLARRIRGERA 140

[Close]

BLAST of MS012645 vs. TAIR 10
Match: AT4G40030.2 (Histone superfamily protein )

HSP 1 Score: 257.7 bits (657), Expect = 5.4e-69
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   LQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           ++MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 27  IKMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 86

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 87  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 146

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 147 TIMPKDIQLARRIRGERA 164

[Close]

BLAST of MS012645 vs. TAIR 10
Match: AT4G40030.1 (Histone superfamily protein )

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of MS012645 vs. TAIR 10
Match: AT4G40040.1 (Histone superfamily protein )

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of MS012645 vs. TAIR 10
Match: AT4G40040.2 (Histone superfamily protein )

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of MS012645 vs. TAIR 10
Match: AT4G40030.3 (Histone superfamily protein )

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of MS012645 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027074927.1	1.2e-65	100.00	histone H3.3 isoform X1 [Coffea arabica]	[more]
XP_023002730.1	2.0e-65	99.28	histone H3.3 isoform X1 [Cucurbita maxima] >XP_023537221.1 histone H3.3 isoform ...	[more]
XP_022997287.1	2.0e-65	99.28	histone H3.3 isoform X1 [Cucurbita maxima]	[more]
XP_022951614.1	2.0e-65	99.28	histone H3.3 isoform X2 [Cucurbita moschata]	[more]
KAG6585308.1	2.6e-65	99.28	O-fucosyltransferase 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS012645 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P59169	1.7e-67	100.00	Histone H3.3 OS=Arabidopsis thaliana OX=3702 GN=HTR4 PE=1 SV=2	[more]
Q6RUR1	1.7e-67	100.00	Histone H3.3 OS=Capsicum annuum OX=4072 PE=2 SV=3	[more]
Q71V89	1.7e-67	100.00	Histone H3.3 OS=Gossypium hirsutum OX=3635 GN=HIS3 PE=2 SV=3	[more]
Q3C2E5	1.7e-67	100.00	Histone H3.3 OS=Lolium multiflorum OX=4521 GN=RH3 PE=2 SV=3	[more]
P69245	1.7e-67	100.00	Histone H3.3 OS=Lolium temulentum OX=34176 PE=2 SV=2	[more]

BLAST of MS012645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6TAN2	5.6e-66	100.00	Histone H3 OS=Coffea arabica OX=13443 GN=LOC113699066 PE=3 SV=1	[more]
A0A6J1KPT2	9.6e-66	99.28	Histone H3 OS=Cucurbita maxima OX=3661 GN=LOC111496502 PE=3 SV=1	[more]
A0A6J1K4K6	9.6e-66	99.28	Histone H3 OS=Cucurbita maxima OX=3661 GN=LOC111492236 PE=3 SV=1	[more]
A0A6J1GJA9	9.6e-66	99.28	Histone H3 OS=Cucurbita moschata OX=3662 GN=LOC111454375 PE=3 SV=1	[more]
A0A2K3NFE2	1.3e-65	99.28	Histone H3 OS=Trifolium pratense OX=57577 GN=histone H3 PE=3 SV=1	[more]

BLAST of MS012645 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G40030.2	5.4e-69	98.55	Histone superfamily protein	[more]
AT4G40030.1	1.2e-68	100.00	Histone superfamily protein	[more]
AT4G40040.1	1.2e-68	100.00	Histone superfamily protein	[more]
AT4G40040.2	1.2e-68	100.00	Histone superfamily protein	[more]
AT4G40030.3	1.2e-68	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 36..57 score: 91.8 coord: 100..116 score: 96.93 coord: 5..19 score: 97.1 coord: 116..137 score: 94.86 coord: 82..100 score: 82.38 coord: 19..33 score: 92.32 coord: 60..77 score: 97.46
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 36..138 e-value: 1.1E-74 score: 264.1
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 2..138
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 69..77
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 17..23
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 4..138 e-value: 6.5E-76 score: 254.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 4..135
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..134 e-value: 9.6E-54 score: 181.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR11426:SF198	SUBFAMILY NOT NAMED	coord: 2..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012645.1	MS012645.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity