MS012635 (gene) Bitter gourd (TR) v1

Overview
NameMS012635
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTetratricopeptide-like helical
Locationscaffold63: 2228870 .. 2229262 (+)
RNA-Seq ExpressionMS012635
SyntenyMS012635
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGGTTTCTTTAGAAGCTTTGGCCATGGCGGGGATGGATTCTGATTTGTGGGCTATGGATGCTGAAGAATGGGAAAGAAATGAGACCGAGAATCATGTCATTCCGCCGCATTTGTTATTAGCGGACGAGGACGAAGACGAAGGAGACATGACGAGTACGACGGGTAACTGTAAGTTTCCGGCCGTTGGATTATTCGGCAGCGGGCGGAGGAAAGATGACGGTGCTGGTGGTGTGTACTGCTTTCCGGCGATTATGTGCCAATATTTCAGAAAAAGCATAGAGAAGAGAGCGTGGAATTTTCTGAGGTCAATGGGAACAATGGTCGGAGCTATTGTAGGGTTTCTTATGGTGATGACTACGAAGATAATAACTTCACAAGGATCCAAGTCC

mRNA sequence

AAAATGGTTTCTTTAGAAGCTTTGGCCATGGCGGGGATGGATTCTGATTTGTGGGCTATGGATGCTGAAGAATGGGAAAGAAATGAGACCGAGAATCATGTCATTCCGCCGCATTTGTTATTAGCGGACGAGGACGAAGACGAAGGAGACATGACGAGTACGACGGGTAACTGTAAGTTTCCGGCCGTTGGATTATTCGGCAGCGGGCGGAGGAAAGATGACGGTGCTGGTGGTGTGTACTGCTTTCCGGCGATTATGTGCCAATATTTCAGAAAAAGCATAGAGAAGAGAGCGTGGAATTTTCTGAGGTCAATGGGAACAATGGTCGGAGCTATTGTAGGGTTTCTTATGGTGATGACTACGAAGATAATAACTTCACAAGGATCCAAGTCC

Coding sequence (CDS)

AAAATGGTTTCTTTAGAAGCTTTGGCCATGGCGGGGATGGATTCTGATTTGTGGGCTATGGATGCTGAAGAATGGGAAAGAAATGAGACCGAGAATCATGTCATTCCGCCGCATTTGTTATTAGCGGACGAGGACGAAGACGAAGGAGACATGACGAGTACGACGGGTAACTGTAAGTTTCCGGCCGTTGGATTATTCGGCAGCGGGCGGAGGAAAGATGACGGTGCTGGTGGTGTGTACTGCTTTCCGGCGATTATGTGCCAATATTTCAGAAAAAGCATAGAGAAGAGAGCGTGGAATTTTCTGAGGTCAATGGGAACAATGGTCGGAGCTATTGTAGGGTTTCTTATGGTGATGACTACGAAGATAATAACTTCACAAGGATCCAAGTCC

Protein sequence

KMVSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVGAIVGFLMVMTTKIITSQGSKS
Homology
BLAST of MS012635 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 7.7e-27
Identity = 72/127 (56.69%), Postives = 90/127 (70.87%), Query Frame = 0

Query: 3   VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPA 62
           VSLEALAMAG+ S+ WAMDAEEWERNE EN V PPH LLADED+D+ ++TST  N  FP 
Sbjct: 3   VSLEALAMAGITSNEWAMDAEEWERNEIENDV-PPH-LLADEDDDDDNVTSTVSNYSFPV 62

Query: 63  VGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVGAIVGFLMVMTTK 122
            G F S RR+D GA  ++CF  I+C    KS+EKRA N + S+  +V  I+GFL+V   K
Sbjct: 63  AGFFDSLRREDGGAHDIHCFWGILCS-LSKSLEKRASNGMSSVRIIVRTILGFLLVKILK 122

Query: 123 IITSQGS 130
           II++  S
Sbjct: 123 IISAHTS 126

BLAST of MS012635 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-26
Identity = 71/127 (55.91%), Postives = 89/127 (70.08%), Query Frame = 0

Query: 3   VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPA 62
           VSLEALAMAG+ S+ WAMDAEEWERNE EN V PPH LLADED+D+ ++TST  N  FP 
Sbjct: 3   VSLEALAMAGITSNEWAMDAEEWERNEIENDV-PPH-LLADEDDDDDNVTSTVSNYSFPV 62

Query: 63  VGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVGAIVGFLMVMTTK 122
            G F S  R+D GA  ++CF  I+C    KS+EKRA N + S+  +V  I+GFL+V   K
Sbjct: 63  AGFFDSLHREDGGADDIHCFWGILCS-LSKSLEKRASNGMSSVRIIVRTILGFLLVKILK 122

Query: 123 IITSQGS 130
           II++  S
Sbjct: 123 IISAHTS 126

BLAST of MS012635 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 78/129 (60.47%), Postives = 89/129 (68.99%), Query Frame = 0

Query: 3   VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPA 62
           VSLEALAMAG+DS+ WAMDAEEWERNE E   IPPH LLADED++E +M++     KFPA
Sbjct: 3   VSLEALAMAGIDSNEWAMDAEEWERNEMEKD-IPPH-LLADEDDEEDEMST-----KFPA 62

Query: 63  VGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVGAIVGFLMVMTTK 122
                S  RKDDG GGV C P IM  + RK  EKR  N L SM  +  A+VGFLM MT K
Sbjct: 63  TRC--SCCRKDDGVGGVSCSPTIM-WHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIK 121

Query: 123 IITSQGSKS 132
           II S+ SKS
Sbjct: 123 IIASKRSKS 121

BLAST of MS012635 vs. NCBI nr
Match: KAG6600647.1 (hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-23
Identity = 76/129 (58.91%), Postives = 88/129 (68.22%), Query Frame = 0

Query: 3   VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPA 62
           VSLEALAMAG+DS+  AMDAEEWERNE E + IPPH LLADED +E +M++     KFPA
Sbjct: 3   VSLEALAMAGIDSNERAMDAEEWERNEMEKN-IPPH-LLADEDNEEDEMST-----KFPA 62

Query: 63  VGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVGAIVGFLMVMTTK 122
                S  RKD+G GGV C P IM  + RK  EKR  N L SM  +  A+VGFLM MT K
Sbjct: 63  TRC--SCCRKDEGVGGVSCSPTIM-WHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIK 121

Query: 123 IITSQGSKS 132
           II S+ SKS
Sbjct: 123 IIASKRSKS 121

BLAST of MS012635 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 4.4e-22
Identity = 68/129 (52.71%), Postives = 86/129 (66.67%), Query Frame = 0

Query: 3   VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD-MTSTTGNCKFP 62
           VSLEALAMAG+DS+ W MDA+EWERNE +  V+PPHLL  +ED+++G+ +TST  N  F 
Sbjct: 3   VSLEALAMAGIDSNEWGMDAQEWERNEID--VVPPHLLADEEDDEDGEYVTSTISNYCFR 62

Query: 63  AVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVGAIVGFLMVMTT 122
             G FG  RR+D  A G      I      K IEKRA N + S+  +V  I+GFLMVMT 
Sbjct: 63  VDGSFGGWRRRDWKADGALRILGIFYS-LSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 122

Query: 123 KIITSQGSK 131
           KII++Q SK
Sbjct: 123 KIISAQRSK 128

BLAST of MS012635 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 78/129 (60.47%), Postives = 89/129 (68.99%), Query Frame = 0

Query: 3   VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGDMTSTTGNCKFPA 62
           VSLEALAMAG+DS+ WAMDAEEWERNE E   IPPH LLADED++E +M++     KFPA
Sbjct: 3   VSLEALAMAGIDSNEWAMDAEEWERNEMEKD-IPPH-LLADEDDEEDEMST-----KFPA 62

Query: 63  VGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVGAIVGFLMVMTTK 122
                S  RKDDG GGV C P IM  + RK  EKR  N L SM  +  A+VGFLM MT K
Sbjct: 63  TRC--SCCRKDDGVGGVSCSPTIM-WHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIK 121

Query: 123 IITSQGSKS 132
           II S+ SKS
Sbjct: 123 IIASKRSKS 121

BLAST of MS012635 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 72/134 (53.73%), Postives = 88/134 (65.67%), Query Frame = 0

Query: 3   VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD---MTSTTGNCK 62
           VSLEALAMAG+DS+ WAMDAEEWERNE +  V+PPHLL  +ED+++GD    TST  N  
Sbjct: 3   VSLEALAMAGIDSNEWAMDAEEWERNEID--VVPPHLLADEEDDEDGDEHVTTSTISNYC 62

Query: 63  FPAVGLFGSGRRKD---DGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVGAIVGFL 122
           FP  G F   R +D   DG  G +    I C    K IEKRA N + S+  +V  I+GFL
Sbjct: 63  FPVDGSFEGWRGRDCKADGGHG-HGILGIFCS-LSKVIEKRASNGMSSVRIIVRTILGFL 122

Query: 123 MVMTTKIITSQGSK 131
           MVMT KII++Q SK
Sbjct: 123 MVMTMKIISAQRSK 132

BLAST of MS012635 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 68/129 (52.71%), Postives = 86/129 (66.67%), Query Frame = 0

Query: 3   VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD-MTSTTGNCKFP 62
           VSLEALAMAG+DS+ W MDA+EWERNE +  V+PPHLL  +ED+++G+ +TST  N  F 
Sbjct: 3   VSLEALAMAGIDSNEWGMDAQEWERNEID--VVPPHLLADEEDDEDGEYVTSTISNYCFR 62

Query: 63  AVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVGAIVGFLMVMTT 122
             G FG  RR+D  A G      I      K IEKRA N + S+  +V  I+GFLMVMT 
Sbjct: 63  VDGSFGGWRRRDWKADGALRILGIFYS-LSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 122

Query: 123 KIITSQGSK 131
           KII++Q SK
Sbjct: 123 KIISAQRSK 128

BLAST of MS012635 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 0

Query: 3   VSLEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDEGD-MTSTTGNCKFP 62
           VSLEALAMAG+DS+ W MDA+EWERNE +  V+PPHLL  +ED+++G+ +TST  N  F 
Sbjct: 3   VSLEALAMAGIDSNEWGMDAQEWERNEID--VVPPHLLADEEDDEDGEYVTSTISNYCFR 62

Query: 63  AVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRAWNFLRSMGTMVGAIVGFLMVMTT 122
             G FG  RR+D  A G +    I      K IEKRA N + S+  +V  I+GFLMVMT 
Sbjct: 63  VDGSFGGWRRRDWKADGAHRILGIFYS-LSKVIEKRASNGMNSVRIIVRTILGFLMVMTN 120

BLAST of MS012635 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.1e-10
Identity = 51/99 (51.52%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 3  VSLEALAMAGMDSDLWAMDAEEWERN--ETEN-HVIPPHLLLADEDEDEGDMTSTTGNCK 62
          VSLEALAMAG+DS+ WAMDAEEW+ N  + EN  +IPPH LLADEDE+            
Sbjct: 3  VSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPH-LLADEDEE-----------N 62

Query: 63 FPAVGLFGSGRRKDDGAGGVYCFPAIMCQYFRKSIEKRA 99
            A  L  SG RKDDG   V+C         RK +EKRA
Sbjct: 63 IAAKELCISGHRKDDGL-VVFCAFRRSYAILRKMMEKRA 88

BLAST of MS012635 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 5  LEALAMAGMDSDLWAMDAEEWERNETENHVIPPHLLLADEDEDE 49
          +EALAMAG+D   W +  EEWE  E+   V+P HLL  D  E+E
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWELQES---VVPLHLLADDFKEEE 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6577295.17.7e-2756.69hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7015383.12.2e-2655.91hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022943015.11.1e-2560.47uncharacterized protein LOC111447880 [Cucurbita moschata][more]
KAG6600647.11.4e-2358.91hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK16880.14.4e-2252.71Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FX985.4e-2660.47uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A0A0KWE71.6e-2253.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A5D3CZU02.1e-2252.71Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS687.6e-2051.24Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A0A0KU907.1e-1051.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G22320.11.5e-0450.00unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012635.1MS012635.1mRNA