MS012634 (gene) Bitter gourd (TR) v1

Overview
NameMS012634
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTetratricopeptide-like helical
Locationscaffold63: 2226570 .. 2226935 (+)
RNA-Seq ExpressionMS012634
SyntenyMS012634
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCAGACGAGGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGGTGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTGAGAGCTATTTTGGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGCGAACAGATCCAAGTCT

mRNA sequence

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCAGACGAGGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGGTGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTGAGAGCTATTTTGGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGCGAACAGATCCAAGTCT

Coding sequence (CDS)

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCAGACGAGGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGGTGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTGAGAGCTATTTTGGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGCGAACAGATCCAAGTCT

Protein sequence

MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVGFFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKIITANRSKS
Homology
BLAST of MS012634 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 3.3e-32
Identity = 80/128 (62.50%), Postives = 100/128 (78.12%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
           MSVSLEALAMAG+ SNEWA+DAEEWER E+EN VPPHLLADED+D++  NVTST +    
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDD--NVTSTVSNYSF 60

Query: 61  -DVGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTI 120
              GFF    R DGG    HCFWGILC++S+S+EK+A +G++S RI+VR ILGFL+V  +
Sbjct: 61  PVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKIL 120

BLAST of MS012634 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 3.3e-32
Identity = 80/128 (62.50%), Postives = 100/128 (78.12%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
           MSVSLEALAMAG+ SNEWA+DAEEWER E+EN VPPHLLADED+D++  NVTST +    
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDD--NVTSTVSNYSF 60

Query: 61  -DVGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTI 120
              GFF    R DGG    HCFWGILC++S+S+EK+A +G++S RI+VR ILGFL+V  +
Sbjct: 61  PVAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKIL 120

BLAST of MS012634 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-25
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
           MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE++DE+   VTST +    
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  --DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTI 120
             D  F G   ++ + DG     GI  ++S+ IEK+A +G+NS RI+VR ILGFLMVMT+
Sbjct: 61  RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120

Query: 121 KIITANRSK 122
           KII+A RSK
Sbjct: 121 KIISAQRSK 128

BLAST of MS012634 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-23
Identity = 68/119 (57.14%), Postives = 87/119 (73.11%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
           MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE++DE+   VTST +    
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  --DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMT 112
             D  F G   ++ + DG H   GI  ++S+ IEK+A +G+NS RI+VR ILGFLMVMT
Sbjct: 61  RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118

BLAST of MS012634 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 9.1e-22
Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVG 60
           MSVSLEALAMAG+DSNEWA+DAEEWER EME  +PPHLLADED++E+E++     T    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPATRCSC 60

Query: 61  FFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKIITANRS 120
               +G G G  C   I+ ++ +  EK+  + L+S  I+  A++GFLM MTIKII + RS
Sbjct: 61  CRKDDGVG-GVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120

Query: 121 KS 123
           KS
Sbjct: 121 KS 121

BLAST of MS012634 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 76/133 (57.14%), Postives = 102/133 (76.69%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEE-EVNVTSTTTGDV 60
           MSVSLEALAMAG+DSNEWA+DAEEWER E++  VPPHLLADE++DE+ + +VT++T  + 
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  ---------GFFGKNGRGDG--GHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLM 120
                    G+ G++ + DG  GH   GI C++S+ IEK+A +G++S RI+VR ILGFLM
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

Query: 121 VMTIKIITANRSK 122
           VMT+KII+A RSK
Sbjct: 121 VMTMKIISAQRSK 132

BLAST of MS012634 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
           MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE++DE+   VTST +    
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  --DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTI 120
             D  F G   ++ + DG     GI  ++S+ IEK+A +G+NS RI+VR ILGFLMVMT+
Sbjct: 61  RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120

Query: 121 KIITANRSK 122
           KII+A RSK
Sbjct: 121 KIISAQRSK 128

BLAST of MS012634 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.1e-23
Identity = 68/119 (57.14%), Postives = 87/119 (73.11%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
           MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE++DE+   VTST +    
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  --DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMT 112
             D  F G   ++ + DG H   GI  ++S+ IEK+A +G+NS RI+VR ILGFLMVMT
Sbjct: 61  RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118

BLAST of MS012634 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.4e-22
Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVG 60
           MSVSLEALAMAG+DSNEWA+DAEEWER EME  +PPHLLADED++E+E++     T    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPATRCSC 60

Query: 61  FFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKIITANRS 120
               +G G G  C   I+ ++ +  EK+  + L+S  I+  A++GFLM MTIKII + RS
Sbjct: 61  CRKDDGVG-GVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120

Query: 121 KS 123
           KS
Sbjct: 121 KS 121

BLAST of MS012634 vs. ExPASy TrEMBL
Match: A0A7J9KXJ3 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_014322 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.5e-09
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 0

Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVG 60
           MSVS+EALAMAG+D NEW +D E+WE  +     PPHLLA+E+E EE   V    T  +G
Sbjct: 46  MSVSIEALAMAGVDYNEWGLDIEKWEDDDDSQCPPPHLLAEENE-EEPARVVEQDTRIIG 105

Query: 61  FFGKNGRGD---GGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKI 115
                 R +   GG C          S+ KK      S ++M++  +  LM++ I +
Sbjct: 106 TSSPTRRSEDDAGGECKHRRFLRRKSSLAKKMRHSSKSIKVMIKYTIMLLMIVMIAL 161

BLAST of MS012634 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 5  LEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEE 49
          +EALAMAG+D  EW +  EEWE    E+ VP HLLAD+ ++EE+
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWEL--QESVVPLHLLADDFKEEEQ 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7015383.13.3e-3262.50hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577295.13.3e-3262.50hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK16880.12.3e-2557.36Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
KAA0044707.16.3e-2357.14Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
XP_022943015.19.1e-2253.28uncharacterized protein LOC111447880 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWE71.6e-2757.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A5D3CZU01.1e-2557.36Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS683.1e-2357.14Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1FX984.4e-2253.28uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A7J9KXJ39.5e-0937.61Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_014322 PE=4... [more]
Match NameE-valueIdentityDescription
AT2G22320.12.2e-0554.55unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012634.1MS012634.1mRNA