Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCAGACGAGGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGGTGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTGAGAGCTATTTTGGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGCGAACAGATCCAAGTCT
mRNA sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCAGACGAGGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGGTGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTGAGAGCTATTTTGGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGCGAACAGATCCAAGTCT
Coding sequence (CDS)
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCAGACGAGGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGGTGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTGAGAGCTATTTTGGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGCGAACAGATCCAAGTCT
Protein sequence
MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVGFFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKIITANRSKS
Homology
BLAST of MS012634 vs. NCBI nr
Match:
KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 148.7 bits (374), Expect = 3.3e-32
Identity = 80/128 (62.50%), Postives = 100/128 (78.12%), Query Frame = 0
Query: 1 MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
MSVSLEALAMAG+ SNEWA+DAEEWER E+EN VPPHLLADED+D++ NVTST +
Sbjct: 1 MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDD--NVTSTVSNYSF 60
Query: 61 -DVGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTI 120
GFF R DGG HCFWGILC++S+S+EK+A +G++S RI+VR ILGFL+V +
Sbjct: 61 PVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKIL 120
BLAST of MS012634 vs. NCBI nr
Match:
KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 148.7 bits (374), Expect = 3.3e-32
Identity = 80/128 (62.50%), Postives = 100/128 (78.12%), Query Frame = 0
Query: 1 MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
MSVSLEALAMAG+ SNEWA+DAEEWER E+EN VPPHLLADED+D++ NVTST +
Sbjct: 1 MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDD--NVTSTVSNYSF 60
Query: 61 -DVGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTI 120
GFF R DGG HCFWGILC++S+S+EK+A +G++S RI+VR ILGFL+V +
Sbjct: 61 PVAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKIL 120
BLAST of MS012634 vs. NCBI nr
Match:
TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])
HSP 1 Score: 125.9 bits (315), Expect = 2.3e-25
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 0
Query: 1 MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
MSVSLEALAMAG+DSNEW +DA+EWER E++ VPPHLLADE++DE+ VTST +
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCF 60
Query: 61 --DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTI 120
D F G ++ + DG GI ++S+ IEK+A +G+NS RI+VR ILGFLMVMT+
Sbjct: 61 RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120
Query: 121 KIITANRSK 122
KII+A RSK
Sbjct: 121 KIISAQRSK 128
BLAST of MS012634 vs. NCBI nr
Match:
KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])
HSP 1 Score: 117.9 bits (294), Expect = 6.3e-23
Identity = 68/119 (57.14%), Postives = 87/119 (73.11%), Query Frame = 0
Query: 1 MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
MSVSLEALAMAG+DSNEW +DA+EWER E++ VPPHLLADE++DE+ VTST +
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCF 60
Query: 61 --DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMT 112
D F G ++ + DG H GI ++S+ IEK+A +G+NS RI+VR ILGFLMVMT
Sbjct: 61 RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118
BLAST of MS012634 vs. NCBI nr
Match:
XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])
HSP 1 Score: 114.0 bits (284), Expect = 9.1e-22
Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = 0
Query: 1 MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVG 60
MSVSLEALAMAG+DSNEWA+DAEEWER EME +PPHLLADED++E+E++ T
Sbjct: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPATRCSC 60
Query: 61 FFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKIITANRS 120
+G G G C I+ ++ + EK+ + L+S I+ A++GFLM MTIKII + RS
Sbjct: 61 CRKDDGVG-GVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120
Query: 121 KS 123
KS
Sbjct: 121 KS 121
BLAST of MS012634 vs. ExPASy TrEMBL
Match:
A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 76/133 (57.14%), Postives = 102/133 (76.69%), Query Frame = 0
Query: 1 MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEE-EVNVTSTTTGDV 60
MSVSLEALAMAG+DSNEWA+DAEEWER E++ VPPHLLADE++DE+ + +VT++T +
Sbjct: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNY 60
Query: 61 ---------GFFGKNGRGDG--GHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLM 120
G+ G++ + DG GH GI C++S+ IEK+A +G++S RI+VR ILGFLM
Sbjct: 61 CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120
Query: 121 VMTIKIITANRSK 122
VMT+KII+A RSK
Sbjct: 121 VMTMKIISAQRSK 132
BLAST of MS012634 vs. ExPASy TrEMBL
Match:
A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)
HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 0
Query: 1 MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
MSVSLEALAMAG+DSNEW +DA+EWER E++ VPPHLLADE++DE+ VTST +
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCF 60
Query: 61 --DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTI 120
D F G ++ + DG GI ++S+ IEK+A +G+NS RI+VR ILGFLMVMT+
Sbjct: 61 RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120
Query: 121 KIITANRSK 122
KII+A RSK
Sbjct: 121 KIISAQRSK 128
BLAST of MS012634 vs. ExPASy TrEMBL
Match:
A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)
HSP 1 Score: 117.9 bits (294), Expect = 3.1e-23
Identity = 68/119 (57.14%), Postives = 87/119 (73.11%), Query Frame = 0
Query: 1 MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTG--- 60
MSVSLEALAMAG+DSNEW +DA+EWER E++ VPPHLLADE++DE+ VTST +
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCF 60
Query: 61 --DVGFFG---KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMT 112
D F G ++ + DG H GI ++S+ IEK+A +G+NS RI+VR ILGFLMVMT
Sbjct: 61 RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118
BLAST of MS012634 vs. ExPASy TrEMBL
Match:
A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)
HSP 1 Score: 114.0 bits (284), Expect = 4.4e-22
Identity = 65/122 (53.28%), Postives = 85/122 (69.67%), Query Frame = 0
Query: 1 MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVG 60
MSVSLEALAMAG+DSNEWA+DAEEWER EME +PPHLLADED++E+E++ T
Sbjct: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPATRCSC 60
Query: 61 FFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKIITANRS 120
+G G G C I+ ++ + EK+ + L+S I+ A++GFLM MTIKII + RS
Sbjct: 61 CRKDDGVG-GVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120
Query: 121 KS 123
KS
Sbjct: 121 KS 121
BLAST of MS012634 vs. ExPASy TrEMBL
Match:
A0A7J9KXJ3 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_014322 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 9.5e-09
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 0
Query: 1 MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEEVNVTSTTTGDVG 60
MSVS+EALAMAG+D NEW +D E+WE + PPHLLA+E+E EE V T +G
Sbjct: 46 MSVSIEALAMAGVDYNEWGLDIEKWEDDDDSQCPPPHLLAEENE-EEPARVVEQDTRIIG 105
Query: 61 FFGKNGRGD---GGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKI 115
R + GG C S+ KK S ++M++ + LM++ I +
Sbjct: 106 TSSPTRRSEDDAGGECKHRRFLRRKSSLAKKMRHSSKSIKVMIKYTIMLLMIVMIAL 161
BLAST of MS012634 vs. TAIR 10
Match:
AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 0
Query: 5 LEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEDEEE 49
+EALAMAG+D EW + EEWE E+ VP HLLAD+ ++EE+
Sbjct: 1 MEALAMAGVDYQEWGLSIEEWEL--QESVVPLHLLADDFKEEEQ 42
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7015383.1 | 3.3e-32 | 62.50 | hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6577295.1 | 3.3e-32 | 62.50 | hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
TYK16880.1 | 2.3e-25 | 57.36 | Tetratricopeptide-like helical [Cucumis melo var. makuwa] | [more] |
KAA0044707.1 | 6.3e-23 | 57.14 | Tetratricopeptide-like helical [Cucumis melo var. makuwa] | [more] |
XP_022943015.1 | 9.1e-22 | 53.28 | uncharacterized protein LOC111447880 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KWE7 | 1.6e-27 | 57.14 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1 | [more] |
A0A5D3CZU0 | 1.1e-25 | 57.36 | Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A5A7TS68 | 3.1e-23 | 57.14 | Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
A0A6J1FX98 | 4.4e-22 | 53.28 | uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... | [more] |
A0A7J9KXJ3 | 9.5e-09 | 37.61 | Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_014322 PE=4... | [more] |
Match Name | E-value | Identity | Description | |
AT2G22320.1 | 2.2e-05 | 54.55 | unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... | [more] |