MS012629 (gene) Bitter gourd (TR) v1

Overview


Name	MS012629
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein
Location	scaffold63: 2179556 .. 2180074 (-)
RNA-Seq Expression	MS012629
Synteny	MS012629

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCAGACTCGGAAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCGACCTCCTTCTCCAACATCACAGAAATTGCCCTCAAAACTATTCCCTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAATATGGAGGGGAAGAAGAAGAAGCGAGGAGGGCTTTTGATCGCAAAGCCCGATTACAAGAAAGCCTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTCTATCCAATCCGGATTATAGAGGAGGAGAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTGGAGGAGGGAGAGGCTAAGAGGCATTGGCTGCATGGGGAGGAGGTGGAGAAATTCAAAGCTTATAAGGGTTCTGCTGATAGAGGCCGCCGACGAACTGACCGCGCTGAAGCTGCCGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGATCTGCTAGG

mRNA sequence

ATGGGAAGCAGACTCGGAAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCGACCTCCTTCTCCAACATCACAGAAATTGCCCTCAAAACTATTCCCTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAATATGGAGGGGAAGAAGAAGAAGCGAGGAGGGCTTTTGATCGCAAAGCCCGATTACAAGAAAGCCTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTCTATCCAATCCGGATTATAGAGGAGGAGAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTGGAGGAGGGAGAGGCTAAGAGGCATTGGCTGCATGGGGAGGAGGTGGAGAAATTCAAAGCTTATAAGGGTTCTGCTGATAGAGGCCGCCGACGAACTGACCGCGCTGAAGCTGCCGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGATCTGCTAGG

Coding sequence (CDS)

ATGGGAAGCAGACTCGGAAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAGCTTCTTATGCCGACCTCCTTCTCCAACATCACAGAAATTGCCCTCAAAACTATTCCCTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAATATGGAGGGGAAGAAGAAGAAGCGAGGAGGGCTTTTGATCGCAAAGCCCGATTACAAGAAAGCCTATGTTACTCTCAGGAATCCCTTGTCAATCTCTCCGGACGTCTATCCAATCCGGATTATAGAGGAGGAGAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTGGAGGAGGGAGAGGCTAAGAGGCATTGGCTGCATGGGGAGGAGGTGGAGAAATTCAAAGCTTATAAGGGTTCTGCTGATAGAGGCCGCCGACGAACTGACCGCGCTGAAGCTGCCGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGATCTGCTAGG

Protein sequence

MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIVEEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR

Homology

[Close]

BLAST of MS012629 vs. NCBI nr
Match: XP_022136442.1 (uncharacterized protein LOC111008152 [Momordica charantia])

HSP 1 Score: 334.3 bits (856), Expect = 6.1e-88
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 174
           EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR
Sbjct: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 173

[Close]

BLAST of MS012629 vs. NCBI nr
Match: XP_023531609.1 (uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 hypothetical protein SDJN03_05887, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031291.1 rplW, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.4 bits (773), Expect = 2.6e-78
Identity = 157/173 (90.75%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSF+NITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEE+KRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 174
           EEGEAKRHWLH +E    K YKG ADRGRRR   AEA EPSTKFPWSSMRS R
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of MS012629 vs. NCBI nr
Match: XP_022929525.1 (uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothetical protein SDJN03_24874, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.4 bits (768), Expect = 9.7e-78
Identity = 155/173 (89.60%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSF+NITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEE+KRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 174
           EEGEAKRHWLH +E   FKAYKG ++R RRRT  AE  EPSTKFPWSSMRS R
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of MS012629 vs. NCBI nr
Match: XP_022985025.1 (uncharacterized protein LOC111483116 [Cucurbita maxima])

HSP 1 Score: 300.1 bits (767), Expect = 1.3e-77
Identity = 156/173 (90.17%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSF+NITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEE+KRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 174
           EEGEAKRHWLH +E   FKAYKG +DR RRRT  AE  EPSTKFPWSSMRS R
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of MS012629 vs. NCBI nr
Match: XP_023552749.1 (uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo] >XP_023552752.1 uncharacterized protein LOC111810293 [Cucurbita pepo subsp. pepo] >XP_023553074.1 uncharacterized protein LOC111810580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.1 bits (767), Expect = 1.3e-77
Identity = 154/173 (89.02%), Postives = 163/173 (94.22%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSF+NITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEE+KRNMNKQSK SIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIV 120

Query: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 174
           EEGEAKRHWLH +E  +FK+YKG A+RGRR+T  AE  EPSTKFPWSSMRS R
Sbjct: 121 EEGEAKRHWLHEKEPVEFKSYKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 173

[Close]

BLAST of MS012629 vs. ExPASy Swiss-Prot
Match: Q605B4 (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=rplW PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.3e-07
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

[Close]

BLAST of MS012629 vs. ExPASy Swiss-Prot
Match: A0KF23 (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of MS012629 vs. ExPASy Swiss-Prot
Match: A4ST04 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of MS012629 vs. ExPASy Swiss-Prot
Match: Q0ABH3 (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 89
          E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

[Close]

BLAST of MS012629 vs. ExPASy Swiss-Prot
Match: P55839 (50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans OX=714 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-06
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLRN 90
          I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+ 
Sbjct: 29 IVFKVALDANKVEITNAVEQLFEVKVDSVRTVVVKGKTKRRGAKIGRRSDWKKAYVTLQE 88

Query: 91 PLSI 95
            S+
Sbjct: 89 GQSL 92

[Close]

BLAST of MS012629 vs. ExPASy TrEMBL
Match: A0A6J1C5I4 (uncharacterized protein LOC111008152 OS=Momordica charantia OX=3673 GN=LOC111008152 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.9e-88
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 174
           EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR
Sbjct: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 173

[Close]

BLAST of MS012629 vs. ExPASy TrEMBL
Match: A0A6J1EUM4 (uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC111436066 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.7e-78
Identity = 155/173 (89.60%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSF+NITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEE+KRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 174
           EEGEAKRHWLH +E   FKAYKG ++R RRRT  AE  EPSTKFPWSSMRS R
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of MS012629 vs. ExPASy TrEMBL
Match: A0A6J1JA70 (uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.1e-78
Identity = 156/173 (90.17%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSF+NITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEE+KRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 174
           EEGEAKRHWLH +E   FKAYKG +DR RRRT  AE  EPSTKFPWSSMRS R
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of MS012629 vs. ExPASy TrEMBL
Match: A0A6J1FSK6 (uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC111448049 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.4e-77
Identity = 156/173 (90.17%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M SRLGRRVVHFANLPIKLLMPTSF+NITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEE+KRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRTDRAEAAEPSTKFPWSSMRSAR 174
           EEGEAKRHWLH +E    K YKG ADRGRRR   AEA EPSTKFPWSSMRS R
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of MS012629 vs. ExPASy TrEMBL
Match: A0A0A0L0J2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.8e-76
Identity = 153/174 (87.93%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTSF+NITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNMEGKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEE+KRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHGEEVEKFKAYKGSADRGRRRT-DRAEAAEPSTKFPWSSMRSAR 174
           EEGEAK+HWLH +E    K YKG ADRGRRR+   AE  EPSTKFPWSSMRS R
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of MS012629 vs. TAIR 10
Match: AT4G39880.1 (Ribosomal protein L23/L15e family protein )

HSP 1 Score: 201.1 bits (510), Expect = 7.5e-52
Identity = 113/175 (64.57%), Postives = 132/175 (75.43%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSFSNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RVVHFANLPIKLLMP   +NI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEEKRNMNKQSKSSIV 120
           TLNM+GKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P++ IEE++++  K S S + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKRHWLHGEEVEKFKAY-KGSADRGRRR----TDRAEAAEPSTKFPWSSMR 171
           EE + K HWL  +E  +   Y KG   RG  R    T    AA  + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

The following BLAST results are available for this feature:

BLAST of MS012629 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136442.1	6.1e-88	100.00	uncharacterized protein LOC111008152 [Momordica charantia]	[more]
XP_023531609.1	2.6e-78	90.75	uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 ...	[more]
XP_022929525.1	9.7e-78	89.60	uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothet...	[more]
XP_022985025.1	1.3e-77	90.17	uncharacterized protein LOC111483116 [Cucurbita maxima]	[more]
XP_023552749.1	1.3e-77	89.02	uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo] >XP_023552752....	[more]

BLAST of MS012629 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q605B4	9.3e-07	41.67	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
A0KF23	1.6e-06	45.76	50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC...	[more]
A4ST04	2.1e-06	45.76	50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rp...	[more]
Q0ABH3	2.1e-06	45.76	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]
P55839	2.7e-06	42.19	50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans OX=714 GN=rpl...	[more]

BLAST of MS012629 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C5I4	2.9e-88	100.00	uncharacterized protein LOC111008152 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1EUM4	4.7e-78	89.60	uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC1114360...	[more]
A0A6J1JA70	6.1e-78	90.17	uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116...	[more]
A0A6J1FSK6	1.4e-77	90.17	uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC1114480...	[more]
A0A0A0L0J2	9.8e-76	87.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1	[more]

BLAST of MS012629 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39880.1	7.5e-52	64.57	Ribosomal protein L23/L15e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..139 e-value: 5.9E-24 score: 86.9
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 29..90 e-value: 1.5E-15 score: 57.2
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 5..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..158
None	No IPR available	PANTHER	PTHR12059:SF7	BNAC07G51330D PROTEIN	coord: 5..171
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 19..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012629.1	MS012629.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome