MS012595 (gene) Bitter gourd (TR) v1

Overview


Name	MS012595
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold63: 1894998 .. 1897049 (-)
RNA-Seq Expression	MS012595
Synteny	MS012595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACCCCTCCATCTCTCCTGTCTTTAACTATTCATTCCGCCATCCTTAACCTTTCCAGCATCTCCGATCTCTCTTTTCTCCCTGATCATATCGTCCTTGAACTCTTCCTGGTACTTCTCTCTCTCTGATCTTACAGATATGGCCTGATTTGTCTTCCTCTTCTTCATCTTTTGTTTTCAATGCGTTTTTTGTAAATTTCCCACTTACCCTTCTTGTAGTCTTCTGTTTCTGTTACTGCGGTGTTTTATTTCTTCTGTTTTTTTTTTCTTTTTGAATATTGGGTCTGAATTTTGGATCGTGGTGCTTCTTGAATTGGGGACTCGGGGTTTGTTGATTGTTTGTTTACGTCTGGTCAACGCTATTATCAATCTTTAGTGGCTGGTCTTAATGTGAGGAGAAAAAGTTAACTTGGGTGGAGTGGAGGGTAGAGTTTTGTTGGAATGTCTATTGAAATTTTGATGTTTCTGTTTTTACATTCTTTGTGATTATATCAGTTTCTAGACATATCTTCTCCGATGTAGGATATTGCGACAGTTATGATATTGTTATCCTCTGCATAAGTGAAAATTTTGTTTTTATTTGATTTTCACTGTTGAAATTACTTCTCTTTTCTCGAATGTGAAGATTTTATGCTATATCGGATTTTGTATTTATTGAATTCAGTTATTTTGGAAAATGTAGTTGTTACTTGTGTGTACAAGCCTTGTATGAGCTTGACAATTTATGGATCTAGAATGGGCAATATGTGATTATATGATTCTGAAATACAATGAAATTTTGCCTTCTTAACTAATTTAACATTTTGGACACTCATGCGTGCTGGTGCTACTTTTTGGCTCTTACGATTTAACTTTGTCTATTGAGAATGTTTTCAATTGTAGCCCCTTCGCCCTGTTGGTTCGGCCCGTATTTGAGTAACACCTCACCTACTCAAAGACCTCGTATTTGGATAAACTTAATATGGAAAACTTTTAATATCTCCAAGAGTCTGAGACTTGGCAGGCACAAACTATTTTAAAAAATAGAACGTTTTCAATTGTATTTTATTCTAAAGTCTCAGGGTAGAAGAAGAATGTGTTAGTGTAATTGTGAAATTAGCTTTTGGTAATTTTGGTGTTATGTTGTGGTGAAATTATATTTAACTATTGCATAATATTTTACATGGACTTGACTTCATGATCCATGCCTTTATACTACAGCCTTTTTTAGTCTTAAATGGAGTAGCCTTTTAGATGGATCTGGGTTTGATCTTCTTTTTTCTTTTGGTTTTTTTCCCCTTTTTCCTTTTCTTTTTGCCACCCATGGATTAGCATGAAAAGAACCCTGAAATCATTGAACTTTTAAATGAGGGTCAAAGCGTTCCCCAACCTGATAGCAACGAGGACTATTTACTATCTCCTCCTTTCTAATATTCCAACTGTAGCCATAGGATCTAGGAGAAGACTCCCTGTGAATAACCGTTGCAGTAGTAATAACCTAATAAGTGAACTAGAGATAGAGAATATAGCTGAGTGTAAATAATGGACGATGGAAAATCTTGAAGCCGCTCATCTTCCAAAAGGTTGACCCTGGAACCATTTACAAGTTCGGAAGAAGTGAGCTATATGCAATAATGATTGTGTGTGGAAGGCCAATGGATTGGGATGGTACCCTTCTGTTCCTGTGGTTAGTCATGCTTTGTGCACAATGTTCAAATATACGTGGAAATAATCGTTTTGTTAGCAATATTTTCTGTTAATATTGCAATGTACCAAACGTTGCTTGTACTTGTTTTCTTGCAACACATAATATTGAAATTATTGTTACACCGCTATATAACTTTTTTGTCTACGTTTTATGTACAAATCTTCTTATTGGCTCTTAGTACTTGAAAGTTTCTGAATAAATGAAATAATCTCATGAAGCAGCAAACATTACGGGCTGGAAAACTAAACGAGAGAGTTTTGAGGTTGTTCGTGGCAACCGGAAATGATGAAGTCCTTTCACTCATCGAGGCATTCAATATCCAGCAAATTGTCACCCCTGTTCTTCCTACCAGTAAGAAAACT

mRNA sequence

ATGACAACCCCTCCATCTCTCCTGTCTTTAACTATTCATTCCGCCATCCTTAACCTTTCCAGCATCTCCGATCTCTCTTTTCTCCCTGATCATATCGTCCTTGAACTCTTCCTGCAAACATTACGGGCTGGAAAACTAAACGAGAGAGTTTTGAGGTTGTTCGTGGCAACCGGAAATGATGAAGTCCTTTCACTCATCGAGGCATTCAATATCCAGCAAATTGTCACCCCTGTTCTTCCTACCAGTAAGAAAACT

Coding sequence (CDS)

ATGACAACCCCTCCATCTCTCCTGTCTTTAACTATTCATTCCGCCATCCTTAACCTTTCCAGCATCTCCGATCTCTCTTTTCTCCCTGATCATATCGTCCTTGAACTCTTCCTGCAAACATTACGGGCTGGAAAACTAAACGAGAGAGTTTTGAGGTTGTTCGTGGCAACCGGAAATGATGAAGTCCTTTCACTCATCGAGGCATTCAATATCCAGCAAATTGTCACCCCTGTTCTTCCTACCAGTAAGAAAACT

Protein sequence

MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGNDEVLSLIEAFNIQQIVTPVLPTSKKT

Homology

[Close]

BLAST of MS012595 vs. NCBI nr
Match: XP_022136568.1 (uncharacterized protein LOC111008243 [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 3.0e-32
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60
          MT PPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND
Sbjct: 1  MTPPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60

Query: 61 EVLSLIEAFNIQQIVTPVLPT 82
          EVLSLIEAFNIQQIVTPVLPT
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPT 81

[Close]

BLAST of MS012595 vs. NCBI nr
Match: XP_022984322.1 (probable UDP-arabinopyranose mutase 5 isoform X2 [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 6.3e-30
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60
          MTTPPSLLSLTIHSAI NLS ISDLSFLPDH+VL+LFL+TLRAGKLNERVL+LFVATG D
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPTSKK 85
          EVLSLIEAFNIQQIVTPVLPT  K
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPTILK 84

[Close]

BLAST of MS012595 vs. NCBI nr
Match: XP_022929347.1 (probable UDP-arabinopyranose mutase 5 isoform X2 [Cucurbita moschata])

HSP 1 Score: 140.6 bits (353), Expect = 6.3e-30
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60
          MTTPPSLLSLTIHSAI NLS ISDLSFLPDH+VL+LFL+TLRAGKLNERVL+LFVATG D
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPTSKK 85
          EVLSLIEAFNIQQIVTPVLPT  K
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPTILK 84

[Close]

BLAST of MS012595 vs. NCBI nr
Match: XP_016900275.1 (PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60
          MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVL LFL+TLRAGKLNERVL+LFVA+G D
Sbjct: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLRAGKLNERVLKLFVASGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPT 82
          EVLSLI AFNIQQIVTPVLPT
Sbjct: 61 EVLSLIGAFNIQQIVTPVLPT 81

[Close]

BLAST of MS012595 vs. NCBI nr
Match: KAG6577325.1 (hypothetical protein SDJN03_24899, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60
          MTTPPSLLSLTIHSAI NLS ISDLSFLPDH+VL+LFL+TLRAGKLNERVL+LFVATG D
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPT 82
          EVLSLIEAFNIQQIVTPVLPT
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPT 81

[Close]

BLAST of MS012595 vs. ExPASy TrEMBL
Match: A0A6J1C7X9 (uncharacterized protein LOC111008243 OS=Momordica charantia OX=3673 GN=LOC111008243 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60
          MT PPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND
Sbjct: 1  MTPPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60

Query: 61 EVLSLIEAFNIQQIVTPVLPT 82
          EVLSLIEAFNIQQIVTPVLPT
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPT 81

[Close]

BLAST of MS012595 vs. ExPASy TrEMBL
Match: A0A6J1J1W3 (probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482658 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60
          MTTPPSLLSLTIHSAI NLS ISDLSFLPDH+VL+LFL+TLRAGKLNERVL+LFVATG D
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPTSKK 85
          EVLSLIEAFNIQQIVTPVLPT  K
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPTILK 84

[Close]

BLAST of MS012595 vs. ExPASy TrEMBL
Match: A0A6J1EMJ2 (probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435949 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.1e-30
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60
          MTTPPSLLSLTIHSAI NLS ISDLSFLPDH+VL+LFL+TLRAGKLNERVL+LFVATG D
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPTSKK 85
          EVLSLIEAFNIQQIVTPVLPT  K
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPTILK 84

[Close]

BLAST of MS012595 vs. ExPASy TrEMBL
Match: A0A1S4DX21 (probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489119 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.2e-30
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60
          MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVL LFL+TLRAGKLNERVL+LFVA+G D
Sbjct: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLRAGKLNERVLKLFVASGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPT 82
          EVLSLI AFNIQQIVTPVLPT
Sbjct: 61 EVLSLIGAFNIQQIVTPVLPT 81

[Close]

BLAST of MS012595 vs. ExPASy TrEMBL
Match: A0A0A0KVY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605100 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-28
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60
          MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVL LFL+TL+AGKLNERVL+LFVA+G D
Sbjct: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPT 82
          EVLSLI  F IQQIVTPVLPT
Sbjct: 61 EVLSLIGEFKIQQIVTPVLPT 81

[Close]

BLAST of MS012595 vs. TAIR 10
Match: AT4G30390.1 (unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 5.5e-24
Identity = 54/78 (69.23%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 4  PPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGNDEVL 63
          PPSLLSLT+++A+LN+S I+DLS LPDHIVL+LF +TL AGKLNERVLRLF+A+GN+EVL
Sbjct: 5  PPSLLSLTVNAAVLNISRINDLSHLPDHIVLDLFARTLEAGKLNERVLRLFMASGNEEVL 64

Query: 64 SLIEAFNIQQIVTPVLPT 82
          S+I+A  I+  V+P+LPT
Sbjct: 65 SVIDALKIKINVSPILPT 82

The following BLAST results are available for this feature:

BLAST of MS012595 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136568.1	3.0e-32	98.77	uncharacterized protein LOC111008243 [Momordica charantia]	[more]
XP_022984322.1	6.3e-30	89.29	probable UDP-arabinopyranose mutase 5 isoform X2 [Cucurbita maxima]	[more]
XP_022929347.1	6.3e-30	89.29	probable UDP-arabinopyranose mutase 5 isoform X2 [Cucurbita moschata]	[more]
XP_016900275.1	1.1e-29	92.59	PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Cucumis melo]	[more]
KAG6577325.1	1.1e-29	91.36	hypothetical protein SDJN03_24899, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS012595 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C7X9	1.5e-32	98.77	uncharacterized protein LOC111008243 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1J1W3	3.1e-30	89.29	probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EMJ2	3.1e-30	89.29	probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A1S4DX21	5.2e-30	92.59	probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0KVY4	2.2e-28	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605100 PE=4 SV=1	[more]

BLAST of MS012595 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30390.1	5.5e-24	69.23	unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bac...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012595.1	MS012595.1	mRNA