MS012592 (gene) Bitter gourd (TR) v1

Overview
NameMS012592
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncytochrome c oxidase subunit 6a, mitochondrial
Locationscaffold63: 1884157 .. 1885556 (-)
RNA-Seq ExpressionMS012592
SyntenyMS012592
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCGACAATCCGATCCAATCTTCTTCGCGCCGCCTTTCGCGGTGCCTCTCGAAACTCTGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGATGATGTTCGTAAGTCTCTCAATCTCTCTCGCTAAGAGAATATTGTTCGTAATCGAAATCTCTCTGGTACTTTTTATCGTGGTTGTGTCTGCGCTGCAATTGGTTCACGTCTCTCTCGATTTGCTTTTCTTTATATGGTCAGAATTATTTCTTGTTACTTTTGACAATTTCGTTTAGCCCCTGTATGTTAGATTTCTTTAATTTTTCTGCCCTATTTTCATCTGACGAAATGAGGGGAAAAGGATGATATTAATGATCGAGTCATATACACAAAGTCAGACCTAAATAATTTGATCGTACGTTTTTATGTTCCTTTTAAATTGGGAAGCTTGCAAAGGGAGCATTTGATACTTGTCTGTAACACATTTGATGAGGTTCTCAGTCGCTGAGGAGTAGATTTGATTTAAAAAGAAGGTGAGGAGGAAGACGAGAGGGAAGAAAATTTCTTGGTCGATTACTGAGTGGCACTAATATACTTCTTGATTTCTATAATTAGATAAGAATGCTCAATAAAGTTTTAGGTACATCTACTCCGCTCTCAGATATTAAGACATAAAGGAAAACTGGAAAAGAAACATAAATGTAGTAAGTTTATAAGTGGATTTAGTTCTTCTATAAACAAATTCTCCTTTGAGATAAAGGGTGTGAAAATTTTTGGAACAAAGCCAAGGGCTTTTTTCAATGACTAACGAAGAGGATGTGGGGGTGATGGACAAATGAATCAATTCAGTGTCATGATTCTTCGGCTCAAATTCGTGTTGAAGTGAATTTATTTTCCTTTGATTTGCCAAAAAATATACTTGCTGGTTCTTTACTTTGACTAGGTACATTTATGTATTGTTATTTCAAGTACTATTTCTGACTTATAGTGGACAAGTAGCAAGTTCGATAAGAAATTGTATGCAGGAGTGCAATAAAGCTCCTTTTTTATGATATATCTTCTTCCTTTATGTTCATACTGCATATGTTTTATTTCTTATACGGACTTTCTTTCTTGATGTGATGTCAGGTGAGACGGCAAAGTGGGAGAAGATTACTTACGCAGGCATTATAGCTTGCACAACTTTAGCATTCTATAATTTATCAAAGGGCCACCCCCACCATGAAGAGCCTCCTGTGAGCTATAGCTTCAGTCAATTTATTTTTCCCTCCACATCTCAATATCTTAGTTTCACTATGCATTGTACTCTCATATGTGTCCCATTTATATTTGTTTTATTTTCATTTTATGCAGGCATATCCCTATTTACACATACGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACTTCATTAC

mRNA sequence

ATGGCGATGGCGACAATCCGATCCAATCTTCTTCGCGCCGCCTTTCGCGGTGCCTCTCGAAACTCTGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGATGATGTTCGTGAGACGGCAAAGTGGGAGAAGATTACTTACGCAGGCATTATAGCTTGCACAACTTTAGCATTCTATAATTTATCAAAGGGCCACCCCCACCATGAAGAGCCTCCTGCATATCCCTATTTACACATACGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACTTCATTAC

Coding sequence (CDS)

ATGGCGATGGCGACAATCCGATCCAATCTTCTTCGCGCCGCCTTTCGCGGTGCCTCTCGAAACTCTGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGATGATGTTCGTGAGACGGCAAAGTGGGAGAAGATTACTTACGCAGGCATTATAGCTTGCACAACTTTAGCATTCTATAATTTATCAAAGGGCCACCCCCACCATGAAGAGCCTCCTGCATATCCCTATTTACACATACGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACTTCATTAC

Protein sequence

MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGKLPLHY
Homology
[Close]
BLAST of MS012592 vs. NCBI nr
Match: KAG7015416.1 (Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.0 bits (471), Expect = 1.5e-43
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDD RETAKWEKITYAGI++C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWGKLPLHY 95
          NLSKGHPH+EEPPAYPYLHIRNKEFPWGKLP HY
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPRHY 94

[Close]
BLAST of MS012592 vs. NCBI nr
Match: XP_022136571.1 (cytochrome c oxidase subunit 6a, mitochondrial [Momordica charantia])

HSP 1 Score: 183.3 bits (464), Expect = 9.4e-43
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]
BLAST of MS012592 vs. NCBI nr
Match: XP_022941809.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6600678.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031316.1 Cytochrome c oxidase subunit 6a, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.7 bits (452), Expect = 2.3e-41
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]
BLAST of MS012592 vs. NCBI nr
Match: XP_023001309.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]
BLAST of MS012592 vs. NCBI nr
Match: XP_023545456.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          M+MATIRSNLLRAAFRGASRNSAQPKRGF+SSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]
BLAST of MS012592 vs. ExPASy Swiss-Prot
Match: Q9T070 (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-26
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDVRETAKWEKITYAGIIACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDD  E AKWEKITY GI +CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

[Close]
BLAST of MS012592 vs. ExPASy TrEMBL
Match: A0A6J1C3V4 (cytochrome c oxidase subunit 6a, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008246 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.6e-43
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]
BLAST of MS012592 vs. ExPASy TrEMBL
Match: A0A6J1FPI8 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111447063 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]
BLAST of MS012592 vs. ExPASy TrEMBL
Match: A0A6J1KMD3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495450 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.6e-41
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]
BLAST of MS012592 vs. ExPASy TrEMBL
Match: A0A6J1ERW3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435960 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.5e-41
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDD RETAKWEKITYAGI++C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]
BLAST of MS012592 vs. ExPASy TrEMBL
Match: A0A6J1J8L1 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111482732 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMA IRSNLLRAAFRGASRN AQPKRGFASSAHDD RETAKWEKITYAGI++C+ LAFY
Sbjct: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]
BLAST of MS012592 vs. TAIR 10
Match: AT4G37830.1 (cytochrome c oxidase-related )

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-27
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDVRETAKWEKITYAGIIACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDD  E AKWEKITY GI +CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

[Close]
BLAST of MS012592 vs. TAIR 10
Match: AT4G37830.2 (cytochrome c oxidase-related )

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-19
Identity = 51/89 (57.30%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDVRETAKWEKITYAGIIACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDD  E AKWEKITY GI +CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PP          EFPWG
Sbjct: 61 YVLSKGHHHGEDPP----------EFPWG 79

The following BLAST results are available for this feature:
BLAST of MS012592 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015416.11.5e-4392.55Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma ... [more]
XP_022136571.19.4e-4398.86cytochrome c oxidase subunit 6a, mitochondrial [Momordica charantia][more]
XP_022941809.12.3e-4196.59cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG660... [more]
XP_023001309.11.2e-4095.45cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima][more]
XP_023545456.11.2e-4094.32cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo][more]
BLAST of MS012592 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9T0701.7e-2666.29Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G... [more]
BLAST of MS012592 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C3V44.6e-4398.86cytochrome c oxidase subunit 6a, mitochondrial OS=Momordica charantia OX=3673 GN... [more]
A0A6J1FPI81.1e-4196.59cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366... [more]
A0A6J1KMD35.6e-4195.45cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1ERW39.5e-4193.18cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366... [more]
A0A6J1J8L11.8e-3990.91cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ... [more]
BLAST of MS012592 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37830.11.2e-2766.29cytochrome c oxidase-related [more]
AT4G37830.22.0e-1957.30cytochrome c oxidase-related [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10Cytochrome c oxidase, subunit VIacoord: 29..93
e-value: 3.4E-14
score: 54.5
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 30..88
IPR001349Cytochrome c oxidase, subunit VIaPFAMPF02046COX6Acoord: 37..88
e-value: 1.1E-5
score: 25.8
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 1..89
NoneNo IPR availablePANTHERPTHR11504:SF0CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIALcoord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012592.1MS012592.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005751 mitochondrial respiratory chain complex IV
molecular_function GO:0004129 cytochrome-c oxidase activity