MS012588 (gene) Bitter gourd (TR) v1

Overview


Name	MS012588
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold63: 1836643 .. 1836970 (+)
RNA-Seq Expression	MS012588
Synteny	MS012588

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAAGAAAATTCCACCTGCAACGGAGACGTTGAGGGACTCGAAACCACCCGCCATTGGAATGCTCAAAAGCTCACAAACTTGCCAAGATTTCTCAGACAGACCACTCCCTTCACAACCCAAAACCAAGCACAATGGAAAATCTTTCAAAGAATTTGCAAACTGTTGCGAAAGGAACGATACGGGCTTCGGTTCATTACTTTCGGGATGTCCAGCCAACATTTTCATTTGGAATTCATTTTTTAGAGCCTCAAGATGATTCCAAGTGCCAGAGACTATTGGAAGCTGAAAAGATGCTCCTCGTGAGGCTCGGAGTGCCTTCTCGT

mRNA sequence

ATGTACAAGAAAATTCCACCTGCAACGGAGACGTTGAGGGACTCGAAACCACCCGCCATTGGAATGCTCAAAAGCTCACAAACTTGCCAAGATTTCTCAGACAGACCACTCCCTTCACAACCCAAAACCAAGCACAATGGAAAATCTTTCAAAGAATTTGCAAACTGTTGCGAAAGGAACGATACGGGCTTCGATGATTCCAAGTGCCAGAGACTATTGGAAGCTGAAAAGATGCTCCTCGTGAGGCTCGGAGTGCCTTCTCGT

Coding sequence (CDS)

ATGTACAAGAAAATTCCACCTGCAACGGAGACGTTGAGGGACTCGAAACCACCCGCCATTGGAATGCTCAAAAGCTCACAAACTTGCCAAGATTTCTCAGACAGACCACTCCCTTCACAACCCAAAACCAAGCACAATGGAAAATCTTTCAAAGAATTTGCAAACTGTTGCGAAAGGAACGATACGGGCTTCGATGATTCCAAGTGCCAGAGACTATTGGAAGCTGAAAAGATGCTCCTCGTGAGGCTCGGAGTGCCTTCTCGT

Protein sequence

MYKKIPPATETLRDSKPPAIGMLKSSQTCQDFSDRPLPSQPKTKHNGKSFKEFANCCERNDTGFDDSKCQRLLEAEKMLLVRLGVPSR

Homology

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BLAST of MS012588 vs. ExPASy TrEMBL
Match: A0A0A0L3H4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115070 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.6e-35
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1  MYKKIPPATETLRDSKPPAIGMLKSSQTCQDFSDRPLPSQPKTKHNGKSFKEFANCCERN 60
          MYKKIPPATETLRDSKPPAIGMLKSSQTCQDFSDRPLPSQPKTKHNGKSFKEF NC ER 
Sbjct: 1  MYKKIPPATETLRDSKPPAIGMLKSSQTCQDFSDRPLPSQPKTKHNGKSFKEFENCWERT 60

Query: 61 DTGFDDSKCQRLLEAEKMLLVRLGVPSR 89
          DT  DDSKCQ+LLEAEKML  +L VPSR
Sbjct: 61 DT--DDSKCQKLLEAEKMLHAKLEVPSR 86

The following BLAST results are available for this feature:

BLAST of MS012588 vs.


Match Name	E-value	Identity	Description

BLAST of MS012588 vs.


Match Name	E-value	Identity	Description

BLAST of MS012588 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3H4	5.6e-35	88.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115070 PE=4 SV=1	[more]

BLAST of MS012588 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012588.1	MS012588.1	mRNA