MS012477 (gene) Bitter gourd (TR) v1

Overview
NameMS012477
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionneurofilament medium polypeptide-like
Locationscaffold63: 988175 .. 988438 (-)
RNA-Seq ExpressionMS012477
SyntenyMS012477
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGTTGCGCCAGCAAGCCGAAGACCAGCGATGGAGTGGCTGTCCCAGTGCCCGCACCCACTCTCGTTGAGGTTGAGGTTGAATCGCTGAAGACAACGACGACAATGGCAGAAGTTTCCATCGTGGAGAAAGATGTCGAGGTCGTCGTAAATAAAGAAAAGAAGAGCGACGATGAAGTTGATGAGAAGAAGGTTGATGAGGGTGAGAAGAAAGTTGAGGAGGGCAACCAACTGCATTCTCTTGGATCTTTGCTCGTTGAG

mRNA sequence

ATGGGTGGTTGCGCCAGCAAGCCGAAGACCAGCGATGGAGTGGCTGTCCCAGTGCCCGCACCCACTCTCGTTGAGGTTGAGGTTGAATCGCTGAAGACAACGACGACAATGGCAGAAGTTTCCATCGTGGAGAAAGATGTCGAGGTCGTCGTAAATAAAGAAAAGAAGAGCGACGATGAAGTTGATGAGAAGAAGGTTGATGAGGGTGAGAAGAAAGTTGAGGAGGGCAACCAACTGCATTCTCTTGGATCTTTGCTCGTTGAG

Coding sequence (CDS)

ATGGGTGGTTGCGCCAGCAAGCCGAAGACCAGCGATGGAGTGGCTGTCCCAGTGCCCGCACCCACTCTCGTTGAGGTTGAGGTTGAATCGCTGAAGACAACGACGACAATGGCAGAAGTTTCCATCGTGGAGAAAGATGTCGAGGTCGTCGTAAATAAAGAAAAGAAGAGCGACGATGAAGTTGATGAGAAGAAGGTTGATGAGGGTGAGAAGAAAGTTGAGGAGGGCAACCAACTGCATTCTCTTGGATCTTTGCTCGTTGAG

Protein sequence

MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDEVDEKKVDEGEKKVEEGNQLHSLGSLLVE
Homology
BLAST of MS012477 vs. NCBI nr
Match: XP_022149261.1 (neurofilament medium polypeptide-like [Momordica charantia])

HSP 1 Score: 158.3 bits (399), Expect = 3.0e-35
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE 60
          MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE
Sbjct: 1  MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE 60

Query: 61 VDEKKVDEGEKKVEEGNQLHSLGSLLVE 89
          VDEKKVDEGEKKVEEGNQLHSLGSLLVE
Sbjct: 61 VDEKKVDEGEKKVEEGNQLHSLGSLLVE 88

BLAST of MS012477 vs. NCBI nr
Match: XP_038875505.1 (fruit protein pKIWI501-like [Benincasa hispida])

HSP 1 Score: 67.8 bits (164), Expect = 5.4e-08
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 0

Query: 1  MGGCASKPK-TSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDD 60
          MGGCASKPK T++    P+P P +V+V  E     TTMA  SI EK+VE V  +EKKSDD
Sbjct: 1  MGGCASKPKTTTEKEVTPLPVP-VVKVSKE-----TTMAIPSIKEKEVE-VETEEKKSDD 60

Query: 61 EVDEKKVDEGEKKV-EEGNQLHSLGSLLVE 89
          +VD KKVD+GEKKV EE NQ  SLG LL++
Sbjct: 61 QVDVKKVDQGEKKVEEEDNQPLSLGCLLIQ 83

BLAST of MS012477 vs. NCBI nr
Match: TYK25973.1 (putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 44/88 (50.00%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 1  MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE 60
          MGGCASKPKT             +E EV  L    +  EV   E  VE   N EK+SDD+
Sbjct: 1  MGGCASKPKTG------------IEKEVTPLPVEESKKEVVPKEAKVE---NGEKESDDQ 60

Query: 61 VDEKKVDEGEKKVEEGNQLHSLGSLLVE 89
          VDEKKVD  EKKVEE  Q  SLG LL++
Sbjct: 61 VDEKKVDVSEKKVEEDTQPLSLGCLLIQ 73

BLAST of MS012477 vs. NCBI nr
Match: KAA0039110.1 (putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 44/88 (50.00%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 1  MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE 60
          MGGCASKPKT             +E EV  L    +  EV   E  VE   N EK+SDD+
Sbjct: 1  MGGCASKPKTG------------IEKEVTPLPVEESKKEVVPKEAKVE---NGEKESDDQ 60

Query: 61 VDEKKVDEGEKKVEEGNQLHSLGSLLVE 89
          VDEKKVD  EKKVEE  Q  SLG LL++
Sbjct: 61 VDEKKVDVSEKKVEEDTQPLSLGCLLIQ 73

BLAST of MS012477 vs. NCBI nr
Match: XP_016901902.1 (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 44/88 (50.00%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 1  MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE 60
          MGGCASKPKT             +E EV  L    +  EV   E  VE   N EK+SDD+
Sbjct: 1  MGGCASKPKTG------------IEKEVTPLPVEESKKEVVPKEAKVE---NGEKESDDQ 60

Query: 61 VDEKKVDEGEKKVEEGNQLHSLGSLLVE 89
          VDEKKVD  EKKVEE  Q  SLG LL++
Sbjct: 61 VDEKKVDVSEKKVEEDTQPLSLGCLLIQ 73

BLAST of MS012477 vs. ExPASy TrEMBL
Match: A0A6J1D7V2 (neurofilament medium polypeptide-like OS=Momordica charantia OX=3673 GN=LOC111017726 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE 60
          MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE
Sbjct: 1  MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE 60

Query: 61 VDEKKVDEGEKKVEEGNQLHSLGSLLVE 89
          VDEKKVDEGEKKVEEGNQLHSLGSLLVE
Sbjct: 61 VDEKKVDEGEKKVEEGNQLHSLGSLLVE 88

BLAST of MS012477 vs. ExPASy TrEMBL
Match: A0A5D3DQN9 (Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1441G00340 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.9e-05
Identity = 44/88 (50.00%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 1  MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE 60
          MGGCASKPKT             +E EV  L    +  EV   E  VE   N EK+SDD+
Sbjct: 1  MGGCASKPKTG------------IEKEVTPLPVEESKKEVVPKEAKVE---NGEKESDDQ 60

Query: 61 VDEKKVDEGEKKVEEGNQLHSLGSLLVE 89
          VDEKKVD  EKKVEE  Q  SLG LL++
Sbjct: 61 VDEKKVDVSEKKVEEDTQPLSLGCLLIQ 73

BLAST of MS012477 vs. ExPASy TrEMBL
Match: A0A5A7T780 (Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G002130 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.9e-05
Identity = 44/88 (50.00%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 1  MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE 60
          MGGCASKPKT             +E EV  L    +  EV   E  VE   N EK+SDD+
Sbjct: 1  MGGCASKPKTG------------IEKEVTPLPVEESKKEVVPKEAKVE---NGEKESDDQ 60

Query: 61 VDEKKVDEGEKKVEEGNQLHSLGSLLVE 89
          VDEKKVD  EKKVEE  Q  SLG LL++
Sbjct: 61 VDEKKVDVSEKKVEEDTQPLSLGCLLIQ 73

BLAST of MS012477 vs. ExPASy TrEMBL
Match: A0A1S4E0Y5 (probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC103496142 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.9e-05
Identity = 44/88 (50.00%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 1  MGGCASKPKTSDGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDDE 60
          MGGCASKPKT             +E EV  L    +  EV   E  VE   N EK+SDD+
Sbjct: 1  MGGCASKPKTG------------IEKEVTPLPVEESKKEVVPKEAKVE---NGEKESDDQ 60

Query: 61 VDEKKVDEGEKKVEEGNQLHSLGSLLVE 89
          VDEKKVD  EKKVEE  Q  SLG LL++
Sbjct: 61 VDEKKVDVSEKKVEEDTQPLSLGCLLIQ 73

BLAST of MS012477 vs. ExPASy TrEMBL
Match: A0A0A0L739 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G210480 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-04
Identity = 44/89 (49.44%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 1  MGGCASKPKTS-DGVAVPVPAPTLVEVEVESLKTTTTMAEVSIVEKDVEVVVNKEKKSDD 60
          MGGCASKPKTS +    P+P         ES K TT MA    V K+ +     EK+SDD
Sbjct: 1  MGGCASKPKTSIEKEVTPLPVE-------ESKKETTIMA----VLKEAKHENGSEKESDD 60

Query: 61 EVDEKKVDEGEKKVEEGNQLHSLGSLLVE 89
          +V EKK+D  EKKVEE  Q  SLG LL++
Sbjct: 61 QVKEKKIDVREKKVEEDIQPLSLGCLLIQ 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149261.13.0e-35100.00neurofilament medium polypeptide-like [Momordica charantia][more]
XP_038875505.15.4e-0858.89fruit protein pKIWI501-like [Benincasa hispida][more]
TYK25973.11.6e-0450.00putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa][more]
KAA0039110.11.6e-0450.00putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa][more]
XP_016901902.11.6e-0450.00PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D7V21.5e-35100.00neurofilament medium polypeptide-like OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A5D3DQN97.9e-0550.00Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T7807.9e-0550.00Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S4E0Y57.9e-0550.00probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A0A0L7393.9e-0449.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G210480 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012477.1MS012477.1mRNA