MS012464 (gene) Bitter gourd (TR) v1

Overview


Name	MS012464
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein SAMBA isoform X2
Location	scaffold63: 899942 .. 901280 (+)
RNA-Seq Expression	MS012464
Synteny	MS012464

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGCTCCTCACCAGCTAATTCTTCCATTTCTACCACAGCGGTTGCCGGAAGATGTAGCACCAATGCAGCAATGTCAGTTGATGATTTTCGCTTCCCCGCCAATTTAATTTCGATACCAGAGCGCAAGGACGAGGCCATGAGCGGTTATTTTCCTTTGATCTCTCCTTTTGTCGAGGGCCGCTTTCAAATTTGGGTATCTAATTGTGATTTTGCTGCACTATCTTTGTGGATTCTGATCTTCAAGTATAAAATTCCTATTCATTTTAGTGGCTTCAATTATTTTGGTGAAGATTTCCATTCTCGATTTGATCCGTCAAGTGCCTTTCATGAACCGCGTTCTTTTAAGCTTGTGTTTTTGCTTTATTTATTTATTTATTTATTTTTATTCATTTGTGCTTAATGGTTCCTCCAACTCTGAAACAATCTTGTTGATGCTTCTACTTTTGTAGTTGTAAATCAGTTCATGTTGTTTTGTGCCATATGGGTTTCTTGAGGCCATGATCGATTTCTGGGGAGCTCATGAACTGTGAAAATGTTACGTTCTCTCACCATTATGTAATGGCATGAGAAACATATAACCAGTAGCCTCTCTAGCTAACTCTGCGATGGATGATGTGACTACTAACTAGAGGGGAGAAAAAGATTTTGTGAAGTGGTGATTGGAAAAATCATTGAAAAACAAGAACTCCAACCAATCATCCATCGCAGGCCAAAAGAAAAGGATTTATATACTTTAATGGAGTTATACTTTGATAGATTTCACCTTCATTTAGCGTGCAATACCATGAATTACATAAAGAGTTAAGAGGGAAATGACTCATCCTAATTTTTAACTAACTTGTTCAGATTTCTCAGGTAAAATAAAAATTATACAATATACTGGTTCCTCGTTCCTTTTTGAACCTCTATTCTCTGAATTAGGAGAGTATAAAACTTCAGCTATTTCTGTTGCATTCATAGAGAGAATTAATCTGATCTTCTGTTGAAATGTTTTGATATTTCCCACTTGTGTTATACTTGGGTGTTTGTTGATTAAGAGGAACAATGGGATAAGAAACTCATGTTAGTTGGACATTGTAATGTCTTTTTGCTTCCTACGCATAAATAAATAATTTCCTCTGGGAGTAAGGTTTGAATTTTCTCTGAGTTACAGCTCTTAAATCTAATATAATGGCTGCGCTGAACAAGGAGGTCAAATCTCTGGATGACGATAACTGGATGTTTGAAGGTCCTCGCTCCCGTATCAACCTTATGTCACGACAAGGTCAACTATTTAACTTTCCACTTGCTCACTCTGCATTCTCATTCTAAACATGTATGCATCAGTTAATGCA

mRNA sequence

ATGAATAGCTCCTCACCAGCTAATTCTTCCATTTCTACCACAGCGGTTGCCGGAAGATGTAGCACCAATGCAGCAATGTCAGTTGATGATTTTCGCTTCCCCGCCAATTTAATTTCGATACCAGAGCGCAAGGACGAGGCCATGAGCGCTCTTAAATCTAATATAATGGCTGCGCTGAACAAGGAGGTCAAATCTCTGGATGACGATAACTGGATGTTTGAAGGTCCTCGCTCCCGTATCAACCTTATGTCACGACAAGGTCAACTATTTAACTTTACTTGCTCACTCTGCATTCTCATTCTAAACATGTATGCATCAGTTAATGCA

Coding sequence (CDS)

ATGAATAGCTCCTCACCAGCTAATTCTTCCATTTCTACCACAGCGGTTGCCGGAAGATGTAGCACCAATGCAGCAATGTCAGTTGATGATTTTCGCTTCCCCGCCAATTTAATTTCGATACCAGAGCGCAAGGACGAGGCCATGAGCGCTCTTAAATCTAATATAATGGCTGCGCTGAACAAGGAGGTCAAATCTCTGGATGACGATAACTGGATGTTTGAAGGTCCTCGCTCCCGTATCAACCTTATGTCACGACAAGGTCAACTATTTAACTTTACTTGCTCACTCTGCATTCTCATTCTAAACATGTATGCATCAGTTAATGCA

Protein sequence

MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALNKEVKSLDDDNWMFEGPRSRINLMSRQGQLFNFTCSLCILILNMYASVNA

Homology

[Close]

BLAST of MS012464 vs. NCBI nr
Match: XP_022131248.1 (protein SAMBA isoform X2 [Momordica charantia])

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60
          MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN
Sbjct: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60

Query: 61 KEVKSLDDDNWMFEGPRSRINLMSRQGQLF 91
          KEVKSLDDD+WMFEGPRSRINLMSRQG  F
Sbjct: 61 KEVKSLDDDSWMFEGPRSRINLMSRQGGSF 90

[Close]

BLAST of MS012464 vs. NCBI nr
Match: XP_022131247.1 (protein SAMBA isoform X1 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 2.4e-37
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60
          MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN
Sbjct: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60

Query: 61 KEVKSLDDDNWMFEGPRSRINLMSRQG 88
          KEVKSLDDD+WMFEGPRSRINLMSRQG
Sbjct: 61 KEVKSLDDDSWMFEGPRSRINLMSRQG 87

[Close]

BLAST of MS012464 vs. NCBI nr
Match: KAA0038559.1 (uncharacterized protein E6C27_scaffold92G00870 [Cucumis melo var. makuwa] >TYK31183.1 uncharacterized protein E5676_scaffold455G004670 [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 3.1e-37
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60
           MN+ SPANSS STTAVAGRCSTNAA+S+DDFRFP+NLIS+PERKDEAM+ALKSNIMAALN
Sbjct: 1   MNTPSPANSSASTTAVAGRCSTNAALSLDDFRFPSNLISVPERKDEAMTALKSNIMAALN 60

Query: 61  KEVKSLDDDNWMFEGPRSRINLMSRQGQLFNF-TCSLCILIL 102
           KEVKSLDDDNWMFEGPRSRINLMSRQGQLF + T +  ILIL
Sbjct: 61  KEVKSLDDDNWMFEGPRSRINLMSRQGQLFKYLTSTFHILIL 102

[Close]

BLAST of MS012464 vs. NCBI nr
Match: XP_022149249.1 (protein SAMBA-like isoform X1 [Momordica charantia] >XP_022149250.1 protein SAMBA-like isoform X1 [Momordica charantia])

HSP 1 Score: 164.5 bits (415), Expect = 5.2e-37
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60
          MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDE MSALKSNIMAALN
Sbjct: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEVMSALKSNIMAALN 60

Query: 61 KEVKSLDDDNWMFEGPRSRINLMSRQGQL 90
          KEVKSLDDDNWMFEGPRS INLMSRQG L
Sbjct: 61 KEVKSLDDDNWMFEGPRSXINLMSRQGVL 89

[Close]

BLAST of MS012464 vs. NCBI nr
Match: XP_022149251.1 (protein SAMBA-like isoform X2 [Momordica charantia])

HSP 1 Score: 164.1 bits (414), Expect = 6.9e-37
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60
          MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDE MSALKSNIMAALN
Sbjct: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEVMSALKSNIMAALN 60

Query: 61 KEVKSLDDDNWMFEGPRSRINLMSRQGQLF 91
          KEVKSLDDDNWMFEGPRS INLMSRQG  F
Sbjct: 61 KEVKSLDDDNWMFEGPRSXINLMSRQGGPF 90

[Close]

BLAST of MS012464 vs. ExPASy Swiss-Prot
Match: Q9C613 (Protein SAMBA OS=Arabidopsis thaliana OX=3702 GN=SAMBA PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-21
Identity = 54/88 (61.36%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MNSSSPANSSISTTAVA-GRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAAL 60
          MN +SPA+S +STTAVA G  S+ AA  +DDF FP ++ S+ ERKDEAM  LK+++M  L
Sbjct: 1  MNGASPAHSLVSTTAVAGGGGSSGAAAGLDDFHFPPDIPSMQERKDEAMRVLKADLMTEL 60

Query: 61 NKEVKSLDDDNWMFEGPRSRINLMSRQG 88
          +KEVKSL++D+WMFEGPRSRI+L+SR+G
Sbjct: 61 DKEVKSLEEDSWMFEGPRSRIHLISRRG 88

[Close]

BLAST of MS012464 vs. ExPASy TrEMBL
Match: A0A6J1BST3 (protein SAMBA isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004506 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.7e-38
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60
          MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN
Sbjct: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60

Query: 61 KEVKSLDDDNWMFEGPRSRINLMSRQGQLF 91
          KEVKSLDDD+WMFEGPRSRINLMSRQG  F
Sbjct: 61 KEVKSLDDDSWMFEGPRSRINLMSRQGGSF 90

[Close]

BLAST of MS012464 vs. ExPASy TrEMBL
Match: A0A6J1BQF8 (protein SAMBA isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004506 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60
          MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN
Sbjct: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60

Query: 61 KEVKSLDDDNWMFEGPRSRINLMSRQG 88
          KEVKSLDDD+WMFEGPRSRINLMSRQG
Sbjct: 61 KEVKSLDDDSWMFEGPRSRINLMSRQG 87

[Close]

BLAST of MS012464 vs. ExPASy TrEMBL
Match: A0A5A7TB46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004670 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60
           MN+ SPANSS STTAVAGRCSTNAA+S+DDFRFP+NLIS+PERKDEAM+ALKSNIMAALN
Sbjct: 1   MNTPSPANSSASTTAVAGRCSTNAALSLDDFRFPSNLISVPERKDEAMTALKSNIMAALN 60

Query: 61  KEVKSLDDDNWMFEGPRSRINLMSRQGQLFNF-TCSLCILIL 102
           KEVKSLDDDNWMFEGPRSRINLMSRQGQLF + T +  ILIL
Sbjct: 61  KEVKSLDDDNWMFEGPRSRINLMSRQGQLFKYLTSTFHILIL 102

[Close]

BLAST of MS012464 vs. ExPASy TrEMBL
Match: A0A6J1D582 (protein SAMBA-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017716 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.5e-37
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60
          MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDE MSALKSNIMAALN
Sbjct: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEVMSALKSNIMAALN 60

Query: 61 KEVKSLDDDNWMFEGPRSRINLMSRQGQL 90
          KEVKSLDDDNWMFEGPRS INLMSRQG L
Sbjct: 61 KEVKSLDDDNWMFEGPRSXINLMSRQGVL 89

[Close]

BLAST of MS012464 vs. ExPASy TrEMBL
Match: A0A6J1D7T9 (protein SAMBA-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017716 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.3e-37
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAALN 60
          MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDE MSALKSNIMAALN
Sbjct: 1  MNSSSPANSSISTTAVAGRCSTNAAMSVDDFRFPANLISIPERKDEVMSALKSNIMAALN 60

Query: 61 KEVKSLDDDNWMFEGPRSRINLMSRQGQLF 91
          KEVKSLDDDNWMFEGPRS INLMSRQG  F
Sbjct: 61 KEVKSLDDDNWMFEGPRSXINLMSRQGGPF 90

[Close]

BLAST of MS012464 vs. TAIR 10
Match: AT1G32310.1 (unknown protein; Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-22
Identity = 54/88 (61.36%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MNSSSPANSSISTTAVA-GRCSTNAAMSVDDFRFPANLISIPERKDEAMSALKSNIMAAL 60
          MN +SPA+S +STTAVA G  S+ AA  +DDF FP ++ S+ ERKDEAM  LK+++M  L
Sbjct: 1  MNGASPAHSLVSTTAVAGGGGSSGAAAGLDDFHFPPDIPSMQERKDEAMRVLKADLMTEL 60

Query: 61 NKEVKSLDDDNWMFEGPRSRINLMSRQG 88
          +KEVKSL++D+WMFEGPRSRI+L+SR+G
Sbjct: 61 DKEVKSLEEDSWMFEGPRSRIHLISRRG 88

The following BLAST results are available for this feature:

BLAST of MS012464 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131248.1	1.4e-37	96.67	protein SAMBA isoform X2 [Momordica charantia]	[more]
XP_022131247.1	2.4e-37	98.85	protein SAMBA isoform X1 [Momordica charantia]	[more]
KAA0038559.1	3.1e-37	85.29	uncharacterized protein E6C27_scaffold92G00870 [Cucumis melo var. makuwa] >TYK31...	[more]
XP_022149249.1	5.2e-37	96.63	protein SAMBA-like isoform X1 [Momordica charantia] >XP_022149250.1 protein SAMB...	[more]
XP_022149251.1	6.9e-37	95.56	protein SAMBA-like isoform X2 [Momordica charantia]	[more]

BLAST of MS012464 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C613	1.9e-21	61.36	Protein SAMBA OS=Arabidopsis thaliana OX=3702 GN=SAMBA PE=1 SV=1	[more]

BLAST of MS012464 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BST3	6.7e-38	96.67	protein SAMBA isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004506 PE=4 SV=...	[more]
A0A6J1BQF8	1.1e-37	98.85	protein SAMBA isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004506 PE=4 SV=...	[more]
A0A5A7TB46	1.5e-37	85.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1D582	2.5e-37	96.63	protein SAMBA-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017716 PE=...	[more]
A0A6J1D7T9	3.3e-37	95.56	protein SAMBA-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017716 PE=...	[more]

BLAST of MS012464 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32310.1	1.3e-22	61.36	unknown protein; Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037547	Protein SAMBA	PANTHER	PTHR37387	PROTEIN SAMBA	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012464.1	MS012464.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046621	negative regulation of organ growth
molecular_function	GO:0010997	anaphase-promoting complex binding