MS012443 (gene) Bitter gourd (TR) v1

Overview


Name	MS012443
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	PRKR-interacting protein 1
Location	scaffold63: 707012 .. 709617 (+)
RNA-Seq Expression	MS012443
Synteny	MS012443

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCGGCAGACTGAAGGACGGGGACCGTCGGCTGGTGGTTCCGATGCCACCCGAACCGAAGTCTGAAACGCAGCTGGCTTCAACGGACTCGAACGCGCTCGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAAGTCAAGCTCCGGAGAATCATTGATAACGTTCCTGTTCGCGTTAGCAACACATCTGGGAGTTCTGCTGGTTCTGGTTCCGGTGACTTTCATCAGGTACTTTTGTGATTTATGTTGTTTTATATTGCATAGATTTTAGCTGGGGTTGCTGCTCGTTGATGATTTTTGTTTGGGGTATTTCTCTCTGAACTAATTTCACGATGAATGCTTGACGTGTTAATGGAAAATTGTGCAAATGCATTGCTTGGAGTGGTTATCAACGAGTGTGAAATGCATCTTAGGTCTTGTGCTAACAAACTGGTTTCGGCACATTTCAGATAATTTAAATTAGTGAGAGTGGCAACAGATGATGAGTTGGAGAACTGTTTATCGGGGGAAATTGGTAGGTGTGAAAATCCTCACTATTTTTAGATCAAGATAGTTCTCCCTTATTTTGATGGGAACTTGAGTACAGAAAAATTCGTAAATTGGGTCTAGCATGTAGATAATTTCTTTGAATATATGGACACTTATAAGGATCATGATTGGTGGTGTATAAATTGAAAGGTCCCGCTTTGGGTTCCTGAGACTAATTACGAAACATTAGTAGGGCGAGCTGGAAAAGGTAGAATCAAAACCTGGCAAAAATGACAACTGAGGTTGTAGAGTACAACTGAGATGTTAGATTACCGAGACTAGATGTCTTGGTAATAGCTCTTTAGGTAATAGCAAAACCTGAGCATGTAACCTTTATTCAAAATCAGAATGATGTTGAGGACTGAAGAGAAGAGGCAAGGTATTTCACAATGCTTGGTCTATGTCCAAAAACAGGGAAACTATCCACCACTATACTTCAGATTCTTATTGGGGTGGATGTGGAATTGTGAATGAGACAACAATGTCTTGTTGGCTCAAGAGTGGGATGCTTGTGTTTTTGTTTTGATAACCTAACATAATGAAGCTTTTTTCATTTATCATTTTAGAAATGCAGTTATCTTGTAATTGAAATATCGTTCATTCGATTAAAATTTGCTGGTAACAGTAATTACTCTTATGCTCTTATGGTGTGGGGTGGCATAGCAACTTGATGCTAACTATATGCTAGTATTTGCAATTAAATCATGCCTTTGCTGAAGTTAGGAGTAGGACCTACCCCTTTTAGATTTCTTCATGGTTAAGAAAGTTTAAAATTCTTGTGCTACTTTGTAAGATTTGAAATTGACATCTGCCCAGTAGAATTTGATTTATGCGCTTGGAAGGTTTAAACACATACTTATTGTGGCTTAGTGGGAGAAATTGATTGGAGTACTGATGTGCTCCTTGCACATGCACCCAAAATTTCATATGGTTACAAGTAATTGATAGATATCATTAGGAGGATTTTATGGAGATGCCACTATCAATTAACCACGGAATAGTTGTTGTCGGTAAACTATCATGGGTTGGCTTGACCTATTTGTCCAAAGGGGCCAAGAAGAATTTAGAGGGAACGGGTACAGACTATGGTGGCCACTGGCCACCTACCTTTTTTTTTTTTGAAATCCGTGTGTGCAGGGCAACTGACCACCTACCTAGGATTTAATATCCTATGAGTTTCCTTGGCAACTGAATGTAGTAGGGTCCGACGGTTGTTTTGTGAGATTGGTCGACTCGAGGTGCACTTAAGCTGGCCTGGACATTCATCCCAAAAAAAAAAAAATAGTTGTAGGTAAATGAGTACTCTGTTTGCAGGCAACGCTCTGAGATTTTAGTTAGAGGAAAGGCAGTCCCTGATTTTGTTGGTTTTGTGTCATCTATGAAGGGCTAATGTCATTTAATAGAAGTGGCATGGTTCATAATTTGATTCTTTTGGCCAACCATATTGGCAAAATACAGTTTGACACAAAATATTGTTGTTTATTCTTGGGGTTAAATGGATCTACCATATTTTGATGGAGTTAAGAAAGTTCATGCATAACAATGCAGAACTAAACTTTTCCACCTATCTTAATATCATCTGATTGACTATGTTTTTAGGAAAGAAAATCTCCACTTGTGTAGTTACATCTACAATTTTCGCTCCAAAGTGCTTTAGACCTTTTTGTTCAATCCATTTATTTTCCCACCCACTCTTAATGATGAACAGCTATTCTTGAATTTATGGCAGTATGTCTCGATCCTTGAATTATGTACTAATATCTGCTTGTCCCATCTTTATCAAATGACAGTATAGGCAAATGAGGCGAAAAGAGCAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAGAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAGAGATTGAAAGCTGCAGAGGAACGCACTGAAAAGAAGCGCTTAAAACGCCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGAAAAGTGAATTCAGGCGGAGATGAGAATCAGAAAGATGCATCCTCCGGTGATGACGGGGATACAGATAATGGTGAGGATGAAGCTACA

mRNA sequence

ATGTCAACCGGCAGACTGAAGGACGGGGACCGTCGGCTGGTGGTTCCGATGCCACCCGAACCGAAGTCTGAAACGCAGCTGGCTTCAACGGACTCGAACGCGCTCGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAAGTCAAGCTCCGGAGAATCATTGATAACGTTCCTGTTCGCGTTAGCAACACATCTGGGAGTTCTGCTGGTTCTGGTTCCGGTGACTTTCATCAGTATAGGCAAATGAGGCGAAAAGAGCAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAGAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAGAGATTGAAAGCTGCAGAGGAACGCACTGAAAAGAAGCGCTTAAAACGCCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGAAAAGTGAATTCAGGCGGAGATGAGAATCAGAAAGATGCATCCTCCGGTGATGACGGGGATACAGATAATGGTGAGGATGAAGCTACA

Coding sequence (CDS)

ATGTCAACCGGCAGACTGAAGGACGGGGACCGTCGGCTGGTGGTTCCGATGCCACCCGAACCGAAGTCTGAAACGCAGCTGGCTTCAACGGACTCGAACGCGCTCGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAAGTCAAGCTCCGGAGAATCATTGATAACGTTCCTGTTCGCGTTAGCAACACATCTGGGAGTTCTGCTGGTTCTGGTTCCGGTGACTTTCATCAGTATAGGCAAATGAGGCGAAAAGAGCAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAGAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAGAGATTGAAAGCTGCAGAGGAACGCACTGAAAAGAAGCGCTTAAAACGCCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGAAAAGTGAATTCAGGCGGAGATGAGAATCAGAAAGATGCATCCTCCGGTGATGACGGGGATACAGATAATGGTGAGGATGAAGCTACA

Protein sequence

MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAAEERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDEAT

Homology

[Close]

BLAST of MS012443 vs. NCBI nr
Match: XP_022149170.1 (PRKR-interacting protein 1 [Momordica charantia])

HSP 1 Score: 307.0 bits (785), Expect = 1.0e-79
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120

Query: 121 EERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDEAT 173
           EERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDEAT
Sbjct: 121 EERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDEAT 172

[Close]

BLAST of MS012443 vs. NCBI nr
Match: XP_022941948.1 (PRKR-interacting protein 1 [Cucurbita moschata])

HSP 1 Score: 287.3 bits (734), Expect = 8.5e-74
Identity = 161/173 (93.06%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDGDRRLV+PMPP+PKS+TQLA+T+SNALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQ+KKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120

Query: 121 EERTEKKRLKRQKKKQRRKEKKRKVN-SGGDENQKDASSGDDGDTDNGEDEAT 173
           EERT KKRLKRQKKKQRRKEKK K+N SGGDENQKDASSGD+GDTDNGEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEAT 173

[Close]

BLAST of MS012443 vs. NCBI nr
Match: KAG6600308.1 (PRKR-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030967.1 PRKR-interacting protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286.2 bits (731), Expect = 1.9e-73
Identity = 160/173 (92.49%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MS+G+LKDGDRRLV+PMPP+PKS+TQLA+T++NALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSSGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQ+KKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120

Query: 121 EERTEKKRLKRQKKKQRRKEKKRKVNS-GGDENQKDASSGDDGDTDNGEDEAT 173
           EERT KKRLKRQKKKQRRKEKK K+NS GGDENQKDASSGDDGDTDNGEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDDGDTDNGEDEAT 173

[Close]

BLAST of MS012443 vs. NCBI nr
Match: XP_023512975.1 (PRKR-interacting protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.2 bits (731), Expect = 1.9e-73
Identity = 160/173 (92.49%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDGDRRLV+PMPP+PKS+TQLA+T++NALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQ+KKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120

Query: 121 EERTEKKRLKRQKKKQRRKEKKRKVNS-GGDENQKDASSGDDGDTDNGEDEAT 173
           EERT KKRLKRQKKKQRRKEKK K+NS GGDENQKDASSGD+GDTDNGEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDEAT 173

[Close]

BLAST of MS012443 vs. NCBI nr
Match: XP_022983002.1 (PRKR-interacting protein 1 [Cucurbita maxima])

HSP 1 Score: 284.6 bits (727), Expect = 5.5e-73
Identity = 159/173 (91.91%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDGDRRLV+PMPP+PKS+TQLA+T+SNALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQ+KKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120

Query: 121 EERTEKKRLKRQKKKQRRKEKKRKVNS-GGDENQKDASSGDDGDTDNGEDEAT 173
           EERT KKRLKRQKK+QRRKEKK K+NS GGDENQKDASSG++GDTDNGEDEAT
Sbjct: 121 EERTSKKRLKRQKKRQRRKEKKSKLNSGGGDENQKDASSGEEGDTDNGEDEAT 173

[Close]

BLAST of MS012443 vs. ExPASy Swiss-Prot
Match: Q2KIT1 (PRKR-interacting protein 1 OS=Bos taurus OX=9913 GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 63/179 (35.20%), Postives = 88/179 (49.16%), Query Frame = 0


Query: 18  PPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP PK E Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQALIIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +++K  AEF  R E    A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLEAEFQKRLERNKIA 130

Query: 138 AEERTEKKRLKRQKKKQRR------KEKKRKVNSGGDENQKDASSGDD---GDTDNGED 170
           AEE+T K+R KRQK K+++      K +++K +    E Q+  SSG +   G  D  ED
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQSEASSETQEQPSSGSEEASGTEDEEED 178

[Close]

BLAST of MS012443 vs. ExPASy Swiss-Prot
Match: Q9CWV6 (PRKR-interacting protein 1 OS=Mus musculus OX=10090 GN=Prkrip1 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-06
Identity = 62/179 (34.64%), Postives = 89/179 (49.72%), Query Frame = 0


Query: 18  PPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP PK E Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMNEWAPRA 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +++K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTEKKRLKRQK--------KKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDE 171
           AEE+T K+R KRQK        KK + ++KK+K      + Q  +SS +  +T+  E+E
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQKEEPSQCQEQHASSSDEASETEEEEEE 178

[Close]

BLAST of MS012443 vs. ExPASy Swiss-Prot
Match: Q9H875 (PRKR-interacting protein 1 OS=Homo sapiens OX=9606 GN=PRKRIP1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.9e-06
Identity = 60/177 (33.90%), Postives = 88/177 (49.72%), Query Frame = 0


Query: 18  PPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP PK E Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +++K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTEKKRLKRQKKKQR-------RKEKKRKVNSGGDENQKDASSGDDGDTDNGED 170
           AEE+T K+R KRQK K++       + E+K++   G  + Q  +SS +   T+  E+
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEE 176

[Close]

BLAST of MS012443 vs. ExPASy Swiss-Prot
Match: Q5R5J3 (PRKR-interacting protein 1 OS=Pongo abelii OX=9601 GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.9e-06
Identity = 60/177 (33.90%), Postives = 88/177 (49.72%), Query Frame = 0


Query: 18  PPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP PK E Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +++K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTEKKRLKRQKKKQR-------RKEKKRKVNSGGDENQKDASSGDDGDTDNGED 170
           AEE+T K+R KRQK K++       + E+K++   G  + Q  +SS +   T+  E+
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEE 176

[Close]

BLAST of MS012443 vs. ExPASy Swiss-Prot
Match: Q5ZKU0 (PRKR-interacting protein 1 homolog OS=Gallus gallus OX=9031 GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 58/174 (33.33%), Postives = 85/174 (48.85%), Query Frame = 0


Query: 16  PMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNVPVR------------ 75
           P PP P+ E Q      NA        +E+   LE  +R     VP+             
Sbjct: 7   PRPPRPRKEPQPLVIPRNA-------AEEQRLRLERLMRNPEKTVPIPEKLNEWAPRPPP 66

Query: 76  --VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAAE 135
             V +  GSSAG+GSG+FH YR +RR+E  R   MD   ++++   EF  + E     AE
Sbjct: 67  EFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDFMDAMAEKQRLDEEFQKKLERNKMIAE 126

Query: 136 ERTEKKRLKRQKKKQRR-KEKKRKVNSGGDENQKDAS----SGDDGDTDNGEDE 171
           E+T K+R KRQK K+++ + KK K+     E + D S    S +D + D+ E+E
Sbjct: 127 EQTAKRRRKRQKLKEKKLQAKKNKLEQKKQEKESDQSQERVSSEDDEEDSKEEE 173

[Close]

BLAST of MS012443 vs. ExPASy TrEMBL
Match: A0A6J1D4Z8 (PRKR-interacting protein 1 OS=Momordica charantia OX=3673 GN=LOC111017661 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.0e-80
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120

Query: 121 EERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDEAT 173
           EERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDEAT
Sbjct: 121 EERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDEAT 172

[Close]

BLAST of MS012443 vs. ExPASy TrEMBL
Match: A0A6J1FTH7 (PRKR-interacting protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447158 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.1e-74
Identity = 161/173 (93.06%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDGDRRLV+PMPP+PKS+TQLA+T+SNALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQ+KKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120

Query: 121 EERTEKKRLKRQKKKQRRKEKKRKVN-SGGDENQKDASSGDDGDTDNGEDEAT 173
           EERT KKRLKRQKKKQRRKEKK K+N SGGDENQKDASSGD+GDTDNGEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSSGGDENQKDASSGDEGDTDNGEDEAT 173

[Close]

BLAST of MS012443 vs. ExPASy TrEMBL
Match: A0A6J1IY34 (PRKR-interacting protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111481671 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.7e-73
Identity = 159/173 (91.91%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDGDRRLV+PMPP+PKS+TQLA+T+SNALVAYTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTESNALVAYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQ+KKEIAEFNMRREERLKAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120

Query: 121 EERTEKKRLKRQKKKQRRKEKKRKVNS-GGDENQKDASSGDDGDTDNGEDEAT 173
           EERT KKRLKRQKK+QRRKEKK K+NS GGDENQKDASSG++GDTDNGEDEAT
Sbjct: 121 EERTSKKRLKRQKKRQRRKEKKSKLNSGGGDENQKDASSGEEGDTDNGEDEAT 173

[Close]

BLAST of MS012443 vs. ExPASy TrEMBL
Match: A0A1S3C2Q3 (PRKR-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103496186 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.7e-70
Identity = 152/172 (88.37%), Postives = 164/172 (95.35%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDG+RRLV+PMPP+PK ETQLA+T+SNALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQ+KKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDEAT 173
           EERT KKRLKRQKKKQRRKEK+ K+NSG DENQK+ SS D+GDTD GEDEAT
Sbjct: 121 EERTAKKRLKRQKKKQRRKEKRSKMNSGEDENQKEESSDDEGDTDKGEDEAT 172

[Close]

BLAST of MS012443 vs. ExPASy TrEMBL
Match: A0A0A0L705 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199600 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.0e-69
Identity = 151/172 (87.79%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVVPMPPEPKSETQLASTDSNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTG+LKDG+RRLV+PMPP+PK +TQLA+ +SNALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPDTQLATAESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQ+KKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDEAT 173
           EERT KKRLKRQKKKQRRKEK+ K+NSG DENQKD SS D+GDTD GEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKRSKLNSGEDENQKDESSDDEGDTDKGEDEAT 172

[Close]

BLAST of MS012443 vs. TAIR 10
Match: AT2G15270.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink). )

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-38
Identity = 105/173 (60.69%), Postives = 132/173 (76.30%), Query Frame = 0


Query: 1   MSTGRLKDGDRRLVV-PMPPEPKSETQLAS-TDSNALVAYTPPVK-EEDEDLEVKLRRII 60
           MS+G+ K GD RLVV         E + A    S+++V Y PPV  E++EDLEVKLRRI+
Sbjct: 1   MSSGKPKQGDTRLVVAATTASALMEAKKADHGGSSSIVEYKPPVMLEDEEDLEVKLRRIL 60

Query: 61  DNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQRKKEIAEFNMRREERL 120
           +NVPVRVSNTSGSSAGSGSGDFHQYRQMRR+EQDRL RMD+DY ++ ++AEF +RREE+ 
Sbjct: 61  ENVPVRVSNTSGSSAGSGSGDFHQYRQMRRREQDRLTRMDIDYNKRLKMAEFTIRREEKQ 120

Query: 121 KAAEERTEKKRLKRQKKKQRRKEKKRKVNSGGDENQKDASSGDDGDTDNGEDE 171
           KAAEE+T KKRLKRQKKKQ+++EKK+K N+  +E  K    G+   +D GEDE
Sbjct: 121 KAAEEKTSKKRLKRQKKKQKKQEKKQKPNT-TEEEVKQPRVGEI-SSDEGEDE 171

The following BLAST results are available for this feature:

BLAST of MS012443 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149170.1	1.0e-79	100.00	PRKR-interacting protein 1 [Momordica charantia]	[more]
XP_022941948.1	8.5e-74	93.06	PRKR-interacting protein 1 [Cucurbita moschata]	[more]
KAG6600308.1	1.9e-73	92.49	PRKR-interacting protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_023512975.1	1.9e-73	92.49	PRKR-interacting protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022983002.1	5.5e-73	91.91	PRKR-interacting protein 1 [Cucurbita maxima]	[more]

BLAST of MS012443 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2KIT1	2.1e-06	35.20	PRKR-interacting protein 1 OS=Bos taurus OX=9913 GN=PRKRIP1 PE=2 SV=1	[more]
Q9CWV6	2.7e-06	34.64	PRKR-interacting protein 1 OS=Mus musculus OX=10090 GN=Prkrip1 PE=1 SV=2	[more]
Q9H875	7.9e-06	33.90	PRKR-interacting protein 1 OS=Homo sapiens OX=9606 GN=PRKRIP1 PE=1 SV=1	[more]
Q5R5J3	7.9e-06	33.90	PRKR-interacting protein 1 OS=Pongo abelii OX=9601 GN=PRKRIP1 PE=2 SV=1	[more]
Q5ZKU0	1.9e-04	33.33	PRKR-interacting protein 1 homolog OS=Gallus gallus OX=9031 GN=PRKRIP1 PE=2 SV=1	[more]

BLAST of MS012443 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4Z8	5.0e-80	100.00	PRKR-interacting protein 1 OS=Momordica charantia OX=3673 GN=LOC111017661 PE=4 S...	[more]
A0A6J1FTH7	4.1e-74	93.06	PRKR-interacting protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447158 PE=4 SV...	[more]
A0A6J1IY34	2.7e-73	91.91	PRKR-interacting protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111481671 PE=4 SV=1	[more]
A0A1S3C2Q3	4.7e-70	88.37	PRKR-interacting protein 1 OS=Cucumis melo OX=3656 GN=LOC103496186 PE=4 SV=1	[more]
A0A0A0L705	1.0e-69	87.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199600 PE=4 SV=1	[more]

BLAST of MS012443 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15270.1	2.7e-38	60.69	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..161
IPR009548	PRKR-interacting protein 1	PFAM	PF06658	DUF1168	coord: 54..168 e-value: 1.6E-27 score: 96.0
IPR009548	PRKR-interacting protein 1	PANTHER	PTHR13507	UNCHARACTERIZED	coord: 9..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012443.1	MS012443.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003725	double-stranded RNA binding