MS012405 (gene) Bitter gourd (TR) v1

Overview
NameMS012405
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTrypsin inhibitor 5
Locationscaffold63: 492897 .. 493160 (+)
RNA-Seq ExpressionMS012405
SyntenyMS012405
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCAAGAAGAATATTGGCTTCGTAGTGATGATGGTGGTGATGTTTATGATCGCTACTATGGCAGACTCCGCCGCCTCCGTCGAGAATTTGGCGGTGGAGCTCTTGGTAGACGGCGGCGTTCAAGCTTTCCCGAGAAAAATTATACTGAAAAATGGAGGAAATGGTGTGTGTGAGGCAATAGGTCAGCCATGCAAATCTCAAGACGATTGCCCTTTTGACTGTGCATGCTACACCGCCGGCCACTGTGGAGATTTTGTC

mRNA sequence

ATGGAGAGCAAGAAGAATATTGGCTTCGTAGTGATGATGGTGGTGATGTTTATGATCGCTACTATGGCAGACTCCGCCGCCTCCGTCGAGAATTTGGCGGTGGAGCTCTTGGTAGACGGCGGCGTTCAAGCTTTCCCGAGAAAAATTATACTGAAAAATGGAGGAAATGGTGTGTGTGAGGCAATAGGTCAGCCATGCAAATCTCAAGACGATTGCCCTTTTGACTGTGCATGCTACACCGCCGGCCACTGTGGAGATTTTGTC

Coding sequence (CDS)

ATGGAGAGCAAGAAGAATATTGGCTTCGTAGTGATGATGGTGGTGATGTTTATGATCGCTACTATGGCAGACTCCGCCGCCTCCGTCGAGAATTTGGCGGTGGAGCTCTTGGTAGACGGCGGCGTTCAAGCTTTCCCGAGAAAAATTATACTGAAAAATGGAGGAAATGGTGTGTGTGAGGCAATAGGTCAGCCATGCAAATCTCAAGACGATTGCCCTTTTGACTGTGCATGCTACACCGCCGGCCACTGTGGAGATTTTGTC

Protein sequence

MESKKNIGFVVMMVVMFMIATMADSAASVENLAVELLVDGGVQAFPRKIILKNGGNGVCEAIGQPCKSQDDCPFDCACYTAGHCGDFV
Homology
BLAST of MS012405 vs. NCBI nr
Match: KGN52763.1 (hypothetical protein Csa_014543 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-21
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 0

Query: 1  MESKK----NIGFVVMMVVMFMIATMADSAA-SVENLAVELLVDGGVQAFPRKIILKNGG 60
          MESKK     +  VV+++V FMIAT+ADSA  + EN+A  +LVDGG  AFPRK ++KNG 
Sbjct: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60

Query: 61 NGVCEAIGQPCKSQDDCPFDCACYTAGHCGDFV 89
          NGVC   G+ CKS  DCP DCACYTAGHCGD+V
Sbjct: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWV 93

BLAST of MS012405 vs. NCBI nr
Match: KAA0044338.1 (hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467.1 hypothetical protein E5676_scaffold655G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 4.7e-20
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 0

Query: 1  MESKKN-----IGFVVMMVVMFMIATMADSAASVENLAVELLVDGGVQAFPRKIILKNGG 60
          MESKKN     +  VV+M+V+FMIAT+ADS  + EN+A   +V+GG  AFPRK I+KNG 
Sbjct: 1  MESKKNSTGLSVATVVVMMVVFMIATLADSTITTENVASGAVVNGGSHAFPRKNIMKNGD 60

Query: 61 -NGVCEAIGQPCKSQDDCPFDCACYTAGHCGDFV 89
           NGVC   G+ CKS  DCP +CACYTAGHCGD+V
Sbjct: 61 QNGVCLVKGKACKSHKDCPSNCACYTAGHCGDWV 94

BLAST of MS012405 vs. NCBI nr
Match: KGN52762.1 (hypothetical protein Csa_014579 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 6.8e-11
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 0

Query: 5  KNIGFVV--MMVVMFMIATMADSAASVENLAVELLVDG--GVQAFPRKIILKNGGNGVCE 64
          KNIG  V  MMV+M +IAT+ +SA+  E + +  LV       +FPRK++    GNGVC 
Sbjct: 6  KNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKGNGVCP 65

Query: 65 AIGQPCKSQ-DDC-PFD--CACYTAGHCGDFV 89
           IG+PC  +   C PF   CACYTAGHCGDFV
Sbjct: 66 IIGRPCNPEYGGCGPFSDTCACYTAGHCGDFV 97

BLAST of MS012405 vs. NCBI nr
Match: KAG6576916.1 (hypothetical protein SDJN03_24490, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 1  MESK-KNIGF-VVMMVVMFMIATMADSAASVENLAVELLVDGGVQAFPRKIILKNGGNGV 60
          ME K KN G  VVMMV M M+AT+ADSA          + +GG   F  KI+LK+ G+  
Sbjct: 1  MEMKMKNTGLVVVMMVTMIMMATLADSA----------VAEGG--GFRSKILLKSEGSSE 60

Query: 61 CEAIGQPCKSQDDCPFDCACYTAGHCGDFV 89
          C      C++ +DCPF+CACYTAGHCGDFV
Sbjct: 61 CPTY-LSCETHEDCPFNCACYTAGHCGDFV 77

BLAST of MS012405 vs. NCBI nr
Match: KAA0044337.1 (hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466.1 hypothetical protein E5676_scaffold655G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 5  KNIG-FVVMMVVMFMIATMADSAASVENLAVELLVD-GGVQAFPRKIILKNGGNGVCEAI 64
          +NIG    MMV+M +IAT+ +SA+  E + ++L+ D     +FPRK++    GNGVC   
Sbjct: 6  RNIGAAATMMVMMLLIATVVESASPTEKM-IKLVTDHHAAGSFPRKMMRNGKGNGVCPIT 65

Query: 65 GQPCKSQDDC-PF--DCACYTAGHCGDFV 89
          G PC     C PF   CACYTAGHCGDFV
Sbjct: 66 GWPCNPAYGCGPFSDSCACYTAGHCGDFV 93

BLAST of MS012405 vs. ExPASy Swiss-Prot
Match: P34950 (Trypsin inhibitor 5 OS=Luffa aegyptiaca OX=3670 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 19 IATMADSAASVENLAVELLVDGGVQAFPRKIILKNGGNGVCEAIGQPCKSQDDCPFDCAC 78
          +A++A+S+  VE   +EL+ DGG    PRKI+    G G+C  I  PCK+ DDC  DC C
Sbjct: 1  MASVAESSGVVE--VIELISDGG-NDLPRKIMSGRHG-GICPRILMPCKTDDDCMLDCRC 60

Query: 79 YTAGHCG 86
           + G+CG
Sbjct: 61 LSNGYCG 63

BLAST of MS012405 vs. ExPASy TrEMBL
Match: A0A0A0KT53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000830 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.7e-21
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 0

Query: 1  MESKK----NIGFVVMMVVMFMIATMADSAA-SVENLAVELLVDGGVQAFPRKIILKNGG 60
          MESKK     +  VV+++V FMIAT+ADSA  + EN+A  +LVDGG  AFPRK ++KNG 
Sbjct: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60

Query: 61 NGVCEAIGQPCKSQDDCPFDCACYTAGHCGDFV 89
          NGVC   G+ CKS  DCP DCACYTAGHCGD+V
Sbjct: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWV 93

BLAST of MS012405 vs. ExPASy TrEMBL
Match: A0A5D3E009 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00630 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 0

Query: 1  MESKKN-----IGFVVMMVVMFMIATMADSAASVENLAVELLVDGGVQAFPRKIILKNGG 60
          MESKKN     +  VV+M+V+FMIAT+ADS  + EN+A   +V+GG  AFPRK I+KNG 
Sbjct: 1  MESKKNSTGLSVATVVVMMVVFMIATLADSTITTENVASGAVVNGGSHAFPRKNIMKNGD 60

Query: 61 -NGVCEAIGQPCKSQDDCPFDCACYTAGHCGDFV 89
           NGVC   G+ CKS  DCP +CACYTAGHCGD+V
Sbjct: 61 QNGVCLVKGKACKSHKDCPSNCACYTAGHCGDWV 94

BLAST of MS012405 vs. ExPASy TrEMBL
Match: A0A0A0KWE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 0

Query: 5  KNIGFVV--MMVVMFMIATMADSAASVENLAVELLVDG--GVQAFPRKIILKNGGNGVCE 64
          KNIG  V  MMV+M +IAT+ +SA+  E + +  LV       +FPRK++    GNGVC 
Sbjct: 6  KNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKGNGVCP 65

Query: 65 AIGQPCKSQ-DDC-PFD--CACYTAGHCGDFV 89
           IG+PC  +   C PF   CACYTAGHCGDFV
Sbjct: 66 IIGRPCNPEYGGCGPFSDTCACYTAGHCGDFV 97

BLAST of MS012405 vs. ExPASy TrEMBL
Match: A0A5D3E0N0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00620 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.2e-10
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 5  KNIG-FVVMMVVMFMIATMADSAASVENLAVELLVD-GGVQAFPRKIILKNGGNGVCEAI 64
          +NIG    MMV+M +IAT+ +SA+  E + ++L+ D     +FPRK++    GNGVC   
Sbjct: 6  RNIGAAATMMVMMLLIATVVESASPTEKM-IKLVTDHHAAGSFPRKMMRNGKGNGVCPIT 65

Query: 65 GQPCKSQDDC-PF--DCACYTAGHCGDFV 89
          G PC     C PF   CACYTAGHCGDFV
Sbjct: 66 GWPCNPAYGCGPFSDSCACYTAGHCGDFV 93

BLAST of MS012405 vs. ExPASy TrEMBL
Match: A0A5D3E254 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00610 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 5  KNIGF-VVMMVVMFMIATMADSAAS-VENLAVELLVD-GGVQAFPRKIILKNGGNGVCEA 64
          KN+G    MMV+M +IAT+ +SAAS  E   +EL+ D     +FPRK++    GNGVC  
Sbjct: 3  KNMGAEATMMVMMLLIATVVESAASPTEKAMIELVTDHHAASSFPRKMMRNGKGNGVCPI 62

Query: 65 IGQPCKSQDDC-PFD--CACYTAGHCGDFV 89
           G PC     C P    CACYT+G+CGD+V
Sbjct: 63 RGWPCIPAFGCGPLSGVCACYTSGYCGDYV 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52763.15.6e-2161.29hypothetical protein Csa_014543 [Cucumis sativus][more]
KAA0044338.14.7e-2059.57hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467... [more]
KGN52762.16.8e-1150.00hypothetical protein Csa_014579 [Cucumis sativus][more]
KAG6576916.12.0e-1051.11hypothetical protein SDJN03_24490, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0044337.11.3e-0948.31hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466... [more]
Match NameE-valueIdentityDescription
P349501.2e-0744.78Trypsin inhibitor 5 OS=Luffa aegyptiaca OX=3670 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KT532.7e-2161.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000830 PE=4 SV=1[more]
A0A5D3E0092.3e-2059.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KWE43.3e-1150.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1[more]
A0A5D3E0N06.2e-1048.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E2542.0e-0846.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00286PTI_1coord: 57..85
e-value: 0.0016
score: 27.7
NoneNo IPR availableGENE3D4.10.75.20coord: 46..85
e-value: 4.2E-5
score: 25.3
IPR000737Proteinase inhibitor I7, squashPFAMPF00299Squashcoord: 58..85
e-value: 6.3E-5
score: 22.9
IPR000737Proteinase inhibitor I7, squashCDDcd00150PlantTIcoord: 59..85
e-value: 0.00159141
score: 31.1939
IPR011052Proteinase/amylase inhibitor domain superfamilySUPERFAMILY57027Plant inhibitors of proteinases and amylasescoord: 55..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012405.1MS012405.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004866 endopeptidase inhibitor activity
molecular_function GO:0004867 serine-type endopeptidase inhibitor activity