MS012403 (gene) Bitter gourd (TR) v1

Overview
NameMS012403
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTrypsin inhibitor 1-like
Locationscaffold63: 445500 .. 445760 (+)
RNA-Seq ExpressionMS012403
SyntenyMS012403
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCAAGAAAGTTGCTTTTGTGGGAATTCTGGTCATGATAGTGCTTTTGGCGACTTCAGCTTCTTCAGAAAGCAGCATTGAAGCAATATTCGAGCAGGTGAGCGACGGTGGAAATGACATAATAATCCAACGTGGTTTCCCAAGAAAAATGGTGAAAAATGGGATCAAAGGAATTTGTCCCTTAATTTACATGCCCTGCCATAAAGACTCCGATTGCTATGGAGATTGCATTTGCAGAGATGAGGGCATATGCGGC

mRNA sequence

ATGGAGAGCAAGAAAGTTGCTTTTGTGGGAATTCTGGTCATGATAGTGCTTTTGGCGACTTCAGCTTCTTCAGAAAGCAGCATTGAAGCAATATTCGAGCAGGTGAGCGACGGTGGAAATGACATAATAATCCAACGTGGTTTCCCAAGAAAAATGGTGAAAAATGGGATCAAAGGAATTTGTCCCTTAATTTACATGCCCTGCCATAAAGACTCCGATTGCTATGGAGATTGCATTTGCAGAGATGAGGGCATATGCGGC

Coding sequence (CDS)

ATGGAGAGCAAGAAAGTTGCTTTTGTGGGAATTCTGGTCATGATAGTGCTTTTGGCGACTTCAGCTTCTTCAGAAAGCAGCATTGAAGCAATATTCGAGCAGGTGAGCGACGGTGGAAATGACATAATAATCCAACGTGGTTTCCCAAGAAAAATGGTGAAAAATGGGATCAAAGGAATTTGTCCCTTAATTTACATGCCCTGCCATAAAGACTCCGATTGCTATGGAGATTGCATTTGCAGAGATGAGGGCATATGCGGC

Protein sequence

MESKKVAFVGILVMIVLLATSASSESSIEAIFEQVSDGGNDIIIQRGFPRKMVKNGIKGICPLIYMPCHKDSDCYGDCICRDEGICG
Homology
BLAST of MS012403 vs. NCBI nr
Match: KAA0044339.1 (trypsin inhibitor 1-like [Cucumis melo var. makuwa] >TYK29468.1 trypsin inhibitor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 1  MESKKVAFVGILVMIVLLATSASSESSI---EAIFEQVSDGGNDIIIQRGFPRK-MVKNG 60
          M+SKK+  V I+ MI++LA  +SS S +   +     VSDG +   +  G PRK M+K G
Sbjct: 1  MDSKKIVVVAIVGMIIMLAAMSSSASFVVDDKDSTNLVSDGRD---MNNGCPRKIMIKGG 60

Query: 61 I----KGICPLIYMPCHKDSDCYGDCICRDEGICG 88
          +    + +CP I M C +DSDC  DC+C  EG CG
Sbjct: 61 VFKEEQRMCPKILMKCKQDSDCLLDCVCLKEGFCG 92

BLAST of MS012403 vs. NCBI nr
Match: KAG7014942.1 (hypothetical protein SDJN02_22573, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 9  VGILVMIVLLATSASSESSIEAIFEQVSDGGNDIIIQRGFPRKMVKNGIKGICPLIYMPC 68
          VG L ++   A SA+ +++++ + + VSDGGND      FPRKM+ NG +G CP I MPC
Sbjct: 2  VGFL-LVAAFAESAAVDAAVDEVIQLVSDGGND------FPRKMM-NGAQG-CPRILMPC 61

Query: 69 HKDSDCYGDCICRDEG 85
            DSDC+  C CR  G
Sbjct: 62 KVDSDCFPTCKCRSNG 68

BLAST of MS012403 vs. NCBI nr
Match: KAG6576915.1 (hypothetical protein SDJN03_24489, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 8.5e-06
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 9  VGILVMIVLLATSASSESSIEAIFEQVSDGGNDIIIQRGFPRKMVKNGIKGICPLIYMPC 68
          VG L ++   A SA+ +++++ + + VSDGGND      FPRKM+ NG +G CP I MPC
Sbjct: 2  VGFL-LVAAFAESAAVDAAVDEVIQLVSDGGND------FPRKMM-NGAQG-CPRILMPC 61

Query: 69 HKDSDCYGDCICR 82
            DSDC+  C CR
Sbjct: 62 KVDSDCFPTCKCR 65

BLAST of MS012403 vs. NCBI nr
Match: KAG6576919.1 (hypothetical protein SDJN03_24493, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1   MESKKVAFVGILVMIVLLATSASSESSIEAIFEQVSDGGNDIIIQRGFPRKMVKNGI--- 60
           M S K+  V  L+ I+L+AT +S+  +I+     +   G D  I  G PRK++K G+   
Sbjct: 54  MGSMKIVAVA-LIAILLVATLSSAAYAIDDDSMDLVFDGRD--INHGVPRKIMKWGVLNH 113

Query: 61  -KGICPLIYMPCHKDSDCYGDCICRDEGICG 88
            + +CP I M C KDSDC  +CIC + G CG
Sbjct: 114 EERVCPKILMECKKDSDCLAECICLEHGYCG 141

BLAST of MS012403 vs. NCBI nr
Match: KAG7014944.1 (hypothetical protein SDJN02_22575, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1   MESKKVAFVGILVMIVLLATSASSESSIEAIFEQVSDGGNDIIIQRGFPRKMVKNGI--- 60
           M S K+  V  L+ I+L+AT +S+  +I+     +   G D  I  G PRK++K G+   
Sbjct: 54  MGSMKIVAVA-LIAILLVATLSSAAYAIDDDSMDLVFDGRD--INHGVPRKIMKWGVLNH 113

Query: 61  -KGICPLIYMPCHKDSDCYGDCICRDEGICG 88
            + +CP I M C KDSDC  +CIC + G CG
Sbjct: 114 EERVCPKILMECKKDSDCLAECICLEHGYCG 141

BLAST of MS012403 vs. ExPASy Swiss-Prot
Match: P26771 (Trypsin inhibitor 1 OS=Lagenaria siceraria OX=3668 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 7.5e-05
Identity = 17/27 (62.96%), Postives = 19/27 (70.37%), Query Frame = 0

Query: 61 CPLIYMPCHKDSDCYGDCICRDEGICG 88
          CP IYM C  DSDC  DC+C + GICG
Sbjct: 4  CPRIYMECKHDSDCLADCVCLEHGICG 30

BLAST of MS012403 vs. ExPASy Swiss-Prot
Match: P35628 (Trypsin inhibitor 4 OS=Luffa aegyptiaca OX=3670 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 17/28 (60.71%), Postives = 19/28 (67.86%), Query Frame = 0

Query: 60 ICPLIYMPCHKDSDCYGDCICRDEGICG 88
          ICP I MPC  DSDC  +CIC + G CG
Sbjct: 1  ICPRILMPCSSDSDCLAECICLENGFCG 28

BLAST of MS012403 vs. ExPASy Swiss-Prot
Match: P83398 (Trypsin inhibitor 7 OS=Cyclanthera pedata OX=198836 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 0

Query: 60 ICPLIYMPCHKDSDCYGDCICRDEGICG 88
          ICP I M C KDSDC  +CIC++ G CG
Sbjct: 3  ICPRILMKCKKDSDCLAECICQEHGFCG 30

BLAST of MS012403 vs. ExPASy Swiss-Prot
Match: P83397 (Trypsin inhibitor 6 OS=Cyclanthera pedata OX=198836 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-04
Identity = 17/28 (60.71%), Postives = 19/28 (67.86%), Query Frame = 0

Query: 60 ICPLIYMPCHKDSDCYGDCICRDEGICG 88
          ICP I M C KDSDC  +CIC + G CG
Sbjct: 3  ICPRILMKCKKDSDCLAECICEEHGFCG 30

BLAST of MS012403 vs. ExPASy Swiss-Prot
Match: P17680 (Trypsin inhibitor 1 OS=Momordica repens OX=3675 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = 0

Query: 59 GICPLIYMPCHKDSDCYGDCICRDEGICG 88
          GICP I M C +DSDC   C+C+ +G CG
Sbjct: 1  GICPRILMECKRDSDCLAQCVCKRQGYCG 29

BLAST of MS012403 vs. ExPASy TrEMBL
Match: A0A5D3E148 (Trypsin inhibitor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00640 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 1  MESKKVAFVGILVMIVLLATSASSESSI---EAIFEQVSDGGNDIIIQRGFPRK-MVKNG 60
          M+SKK+  V I+ MI++LA  +SS S +   +     VSDG +   +  G PRK M+K G
Sbjct: 1  MDSKKIVVVAIVGMIIMLAAMSSSASFVVDDKDSTNLVSDGRD---MNNGCPRKIMIKGG 60

Query: 61 I----KGICPLIYMPCHKDSDCYGDCICRDEGICG 88
          +    + +CP I M C +DSDC  DC+C  EG CG
Sbjct: 61 VFKEEQRMCPKILMKCKQDSDCLLDCVCLKEGFCG 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0044339.13.5e-0742.11trypsin inhibitor 1-like [Cucumis melo var. makuwa] >TYK29468.1 trypsin inhibito... [more]
KAG7014942.11.3e-0646.05hypothetical protein SDJN02_22573, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6576915.18.5e-0646.58hypothetical protein SDJN03_24489, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6576919.11.5e-0539.56hypothetical protein SDJN03_24493, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014944.11.5e-0539.56hypothetical protein SDJN02_22575, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
P267717.5e-0562.96Trypsin inhibitor 1 OS=Lagenaria siceraria OX=3668 PE=1 SV=2[more]
P356281.3e-0460.71Trypsin inhibitor 4 OS=Luffa aegyptiaca OX=3670 PE=1 SV=1[more]
P833981.3e-0460.71Trypsin inhibitor 7 OS=Cyclanthera pedata OX=198836 PE=1 SV=1[more]
P833971.7e-0460.71Trypsin inhibitor 6 OS=Cyclanthera pedata OX=198836 PE=1 SV=1[more]
P176802.2e-0455.17Trypsin inhibitor 1 OS=Momordica repens OX=3675 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3E1481.7e-0742.11Trypsin inhibitor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00286PTI_1coord: 59..87
e-value: 3.9E-7
score: 39.7
NoneNo IPR availableGENE3D4.10.75.20coord: 48..87
e-value: 3.3E-10
score: 41.6
IPR000737Proteinase inhibitor I7, squashPFAMPF00299Squashcoord: 60..87
e-value: 1.1E-10
score: 41.3
IPR000737Proteinase inhibitor I7, squashPROSITEPS00286SQUASH_INHIBITORcoord: 61..80
IPR000737Proteinase inhibitor I7, squashCDDcd00150PlantTIcoord: 61..87
e-value: 8.37367E-8
score: 41.9795
IPR011052Proteinase/amylase inhibitor domain superfamilySUPERFAMILY57027Plant inhibitors of proteinases and amylasescoord: 58..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012403.1MS012403.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004866 endopeptidase inhibitor activity
molecular_function GO:0004867 serine-type endopeptidase inhibitor activity