MS012401 (gene) Bitter gourd (TR) v1

Overview


Name	MS012401
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	pre-mRNA-splicing factor CWC25-like isoform X2
Location	scaffold63: 419669 .. 421924 (+)
RNA-Seq Expression	MS012401
Synteny	MS012401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGTTGTTATTAGTCCTAAGAGGTCTAGGAGGGACAGGAAACCATTAGAGGAGAAGTTATCCAGAAACTCTAGTTCTCACATTGATGATAATAAAGATCGGGATCAGAAGCATGAGCTTCGTCACAGAGGGCAAAATCTGATACCCCATGAGTCTTCATTAGCACTTGATTCTAAGCCAGAAGGTGGGGTTGTTAGCAAAGAGGCAAACAAGAACAGTGATGGGGGGAGGGATGGAGGGACTAAACATTCATTGAATCCCACTGAAGTATCTCGAGTGCGATCTTATTTTCAGGTTTGTGCTATATGTTAAAGCATTTTTTTCCCGATTAATTTTGATTTTTTTTTCTAATTTCAGGTTTTGAAAATTAACATGACTCTAGTTTGGTTTTGTCCTTGTCCACTATCTAACCAATTTTCATTATTTGATCTGAAGAATTATTGACAGCAACTTAAAGATCATTATTGGTATGCTTTTACCATTCTTTAATCTGTCATCCTAATCCCAAACCTTTTTGGTCTAGAATTAGATTGTTTGTTACTATGTATGAGGTTGGAAGCTTCAAAAGTTTTGTATTTTTATGTTTGAATTTAACTATAATTACTACTTATCCGTTGCTACTTTCTGTCGGTGTCGAAGTGGGACTGCTGCAAGATATGGGCATAACAATTATTTGACTTGATCTACATAGAGCTATTGCTGTACCTTCTCTGATATAAATAAATTCGTGTTGAGGTTTTCCTTTGAATTTCATGAAATTCATAACCTGCATCGTATTTCATTTGAATATGTACGATGCAAAATAGTTTAGCTCAGTAATAATTGTCTCTGCCCCTTCTCCTCCTGCCCTTTTCATTATTTGGTGCAATTTAGATTATGCAACCTTTTTGCTGGGCTGATGTAGTTGGAATCTTGTTCAGCCCTGTGCCTTCAAGTGCATCCGTGTATATAACTTCTTAGGCTTGCCTGTGCATGTCTTATAACAGCACGAGGAACGTGGTAATGCCGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGTGGTAGGTTTCCTTCCTTTTAAGCCCTGATTCCAACTTCTTTTTTTTGAGTTCTCTTCCTCATTTATTTCTTACTGTGCAACGTCATGAGTATATAGCAGTGCACAAAGACGACACTTTCTAGGTTATTCCTTATAACATTTTACTCTAAGCATGCCTATTAAGCATGTATTATTATTACTACTACTTTGATTCTCATGAAGACTACTCCAGATAATTGGAGCAGTTAACAAATACTGTTTTCCTCTTGTAGTAAATTCATGTACCCTTGTCGAAATGTTATGGAGACGGAGAAACTAGTGAAGTTTTGTTGTGGTGTAGTTCTGCCTTTCTCTTAAATGATCATATGGTCTTGGGAGGAAGTCATTCTACAAATAATCTCTCTGCCGGTGCCAAAAGGCAGAAATATAATTTTGTGGATAATGCACTTCTTATCTTTCTACTGTTCCGAAAATGTTACATATAAAATCCTTGTAGAGGTCAAATTTTTATCTAGACTTATATAGTGACAGTCTTGTACAGGAAAATTTAGAATCTCTCTTCAACCTTCTCGTTCCTGCTTCTCCACTTCTCTTGATGTAGTATTTTGTTTCTTTTTTTTTTTAATTTTTAGAGCGTGGTTGGTGGAAGGATTCGAAGGATGAGGATAACGATAGGGCACCTGGAAAGACAGCAACTTACAATTCACAGCAAAGAGATGAGATGCCACAAAGGGAGGATAATCACACGAGGCATCGTGATGGATCCTCGAAAGTGGAGGTTGATGCACCCACTCCTGCTCGGAAAAGGCCTGCATTTAGGGAAAAGAAGATTGCAGTAGACAGTGAAAATGTTGACAAAGCGGCTGTGGCATCAGAGACTAAGAAATCGAGTGATCCACACCATCCTGAGGACGGAAGGGAACGGAGAGAGGAAAGAGGCCGCGACACACGTTATTCTGAGAAACTTAATAAGCATGTCACTGGAGACATGGGTGCCAAAAGGGATGAGATAAAGAGAGGTGGCTACCCAGTGAGAGAAAGGTATGGGAATGGAGGTGGTGGGAACTACAGGGGAAGAGACAGATTCGGCGGGAGGCAAGGATATCGAGCGGGAGCGGGTGGTACTCGTGTAGAGAAATGGAAGCACGACCTGTTTCACGAGGCTAACCGGAGTCCAACTCCGAAGAATGAAGAGGACCAAATTGCCAAGGTTGAAGCTCTCCTCGCTTCT

mRNA sequence

CTTGTTGTTATTAGTCCTAAGAGGTCTAGGAGGGACAGGAAACCATTAGAGGAGAAGTTATCCAGAAACTCTAGTTCTCACATTGATGATAATAAAGATCGGGATCAGAAGCATGAGCTTCGTCACAGAGGGCAAAATCTGATACCCCATGAGTCTTCATTAGCACTTGATTCTAAGCCAGAAGGTGGGGTTGTTAGCAAAGAGGCAAACAAGAACAGTGATGGGGGGAGGGATGGAGGGACTAAACATTCATTGAATCCCACTGAAGTATCTCGAGTGCGATCTTATTTTCAGCACGAGGAACGTGGTAATGCCGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGTGAGCGTGGTTGGTGGAAGGATTCGAAGGATGAGGATAACGATAGGGCACCTGGAAAGACAGCAACTTACAATTCACAGCAAAGAGATGAGATGCCACAAAGGGAGGATAATCACACGAGGCATCGTGATGGATCCTCGAAAGTGGAGGTTGATGCACCCACTCCTGCTCGGAAAAGGCCTGCATTTAGGGAAAAGAAGATTGCAGTAGACAGTGAAAATGTTGACAAAGCGGCTGTGGCATCAGAGACTAAGAAATCGAGTGATCCACACCATCCTGAGGACGGAAGGGAACGGAGAGAGGAAAGAGGCCGCGACACACGTTATTCTGAGAAACTTAATAAGCATGTCACTGGAGACATGGGTGCCAAAAGGGATGAGATAAAGAGAGGTGGCTACCCAGTGAGAGAAAGGTATGGGAATGGAGGTGGTGGGAACTACAGGGGAAGAGACAGATTCGGCGGGAGGCAAGGATATCGAGCGGGAGCGGGTGGTACTCGTGTAGAGAAATGGAAGCACGACCTGTTTCACGAGGCTAACCGGAGTCCAACTCCGAAGAATGAAGAGGACCAAATTGCCAAGGTTGAAGCTCTCCTCGCTTCT

Coding sequence (CDS)

CTTGTTGTTATTAGTCCTAAGAGGTCTAGGAGGGACAGGAAACCATTAGAGGAGAAGTTATCCAGAAACTCTAGTTCTCACATTGATGATAATAAAGATCGGGATCAGAAGCATGAGCTTCGTCACAGAGGGCAAAATCTGATACCCCATGAGTCTTCATTAGCACTTGATTCTAAGCCAGAAGGTGGGGTTGTTAGCAAAGAGGCAAACAAGAACAGTGATGGGGGGAGGGATGGAGGGACTAAACATTCATTGAATCCCACTGAAGTATCTCGAGTGCGATCTTATTTTCAGCACGAGGAACGTGGTAATGCCGGGCAAGTTGGTCGAAGCTTTGGTCGGAGTGCAACTAGTGAGCGTGGTTGGTGGAAGGATTCGAAGGATGAGGATAACGATAGGGCACCTGGAAAGACAGCAACTTACAATTCACAGCAAAGAGATGAGATGCCACAAAGGGAGGATAATCACACGAGGCATCGTGATGGATCCTCGAAAGTGGAGGTTGATGCACCCACTCCTGCTCGGAAAAGGCCTGCATTTAGGGAAAAGAAGATTGCAGTAGACAGTGAAAATGTTGACAAAGCGGCTGTGGCATCAGAGACTAAGAAATCGAGTGATCCACACCATCCTGAGGACGGAAGGGAACGGAGAGAGGAAAGAGGCCGCGACACACGTTATTCTGAGAAACTTAATAAGCATGTCACTGGAGACATGGGTGCCAAAAGGGATGAGATAAAGAGAGGTGGCTACCCAGTGAGAGAAAGGTATGGGAATGGAGGTGGTGGGAACTACAGGGGAAGAGACAGATTCGGCGGGAGGCAAGGATATCGAGCGGGAGCGGGTGGTACTCGTGTAGAGAAATGGAAGCACGACCTGTTTCACGAGGCTAACCGGAGTCCAACTCCGAAGAATGAAGAGGACCAAATTGCCAAGGTTGAAGCTCTCCTCGCTTCT

Protein sequence

LVVISPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGVVSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWKDSKDEDNDRAPGKTATYNSQQRDEMPQREDNHTRHRDGSSKVEVDAPTPARKRPAFREKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKLNKHVTGDMGAKRDEIKRGGYPVRERYGNGGGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANRSPTPKNEEDQIAKVEALLAS

Homology

[Close]

BLAST of MS012401 vs. NCBI nr
Match: XP_023548006.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] >XP_023548014.1 pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 481.1 bits (1237), Expect = 7.4e-132
Identity = 260/319 (81.50%), Postives = 289/319 (90.60%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRSRRDRKPLEEKLSRNSSSH++DNKDRDQKHELRH GQ++ PHESSLALDS PEGG 
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDVTPHESSLALDSHPEGG- 82

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
           VSK AN+NSD  R+GGTK SLNPTEV R RSYFQH++RG+AGQVGRSFGRS++S RGWWK
Sbjct: 83  VSKGANRNSD-EREGGTKRSLNPTEVPRSRSYFQHDKRGSAGQVGRSFGRSSSSGRGWWK 142

Query: 125 DSKDED--NDRAPGKTATYNSQQRDEMPQ--REDNHTRHRDGSSKVEVDAPTPARKRPAF 184
           DSK++D  +DRA GKTATYNSQ+RDE+PQ  +EDNHTR RDGSSK+EVD+  PARKRPAF
Sbjct: 143 DSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRPAF 202

Query: 185 REKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKLNKHVTGDMGA 244
           REKKI  D+EN +KA +ASE+KK SDPH P+DGRERREERGRDTRYS+KL+KHVTGDM +
Sbjct: 203 REKKITPDNENFEKAGMASESKKLSDPHQPQDGRERREERGRDTRYSDKLSKHVTGDMAS 262

Query: 245 KRDEIKRGGYPVRERYGN-GGGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANRS 304
           KRDE+KRGGY VRERYGN GGGGNYRGRDRFGGRQGY A +GGTRVEKWKHDLFHEANRS
Sbjct: 263 KRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPA-SGGTRVEKWKHDLFHEANRS 322

Query: 305 PTPKNEEDQIAKVEALLAS 319
           PTPKNEEDQIAKVEALLAS
Sbjct: 323 PTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of MS012401 vs. NCBI nr
Match: XP_022942670.1 (pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata] >XP_022942671.1 pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 480.7 bits (1236), Expect = 9.6e-132
Identity = 260/319 (81.50%), Postives = 288/319 (90.28%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRSRRDRKPLEEKLSRNSSSH++DNKDRDQKHELRH GQ+  PHESSLALDS PEGG 
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDATPHESSLALDSHPEGG- 82

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
           VSK AN+NSD  R+GGTK SLNPTEV R RSYFQH++RG+AGQVGRSFGRS++S RGWWK
Sbjct: 83  VSKGANRNSD-EREGGTKRSLNPTEVPRSRSYFQHDKRGSAGQVGRSFGRSSSSGRGWWK 142

Query: 125 DSKDED--NDRAPGKTATYNSQQRDEMPQ--REDNHTRHRDGSSKVEVDAPTPARKRPAF 184
           DSK++D  +DRA GKTATYNSQ+RDE+PQ  +EDNHTR RDGSSK+EVD+  PARKRPAF
Sbjct: 143 DSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRPAF 202

Query: 185 REKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKLNKHVTGDMGA 244
           REKKI  D+EN +KA +ASE+KK SDPH P+DGRERREERGRDTRYS+KL+KHVTGDM +
Sbjct: 203 REKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREERGRDTRYSDKLSKHVTGDMAS 262

Query: 245 KRDEIKRGGYPVRERYGN-GGGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANRS 304
           KRDE+KRGGY VRERYGN GGGGNYRGRDRFGGRQGY A +GGTRVEKWKHDLFHEANRS
Sbjct: 263 KRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPA-SGGTRVEKWKHDLFHEANRS 322

Query: 305 PTPKNEEDQIAKVEALLAS 319
           PTPKNEEDQIAKVEALLAS
Sbjct: 323 PTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of MS012401 vs. NCBI nr
Match: KAG6600285.1 (hypothetical protein SDJN03_05518, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030943.1 hypothetical protein SDJN02_04980 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 479.2 bits (1232), Expect = 2.8e-131
Identity = 259/319 (81.19%), Postives = 287/319 (89.97%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRSRRDRKPLEEKLSRNSSSH++DNKDRDQKHELRH GQ+  PHESSLALDS PEGG 
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDATPHESSLALDSHPEGG- 82

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
           VSK AN+NSD  R+GGTK SLNPTE  R RSYFQH++RG+AGQVGRSFGRS++S RGWWK
Sbjct: 83  VSKGANRNSD-EREGGTKRSLNPTEAPRSRSYFQHDKRGSAGQVGRSFGRSSSSGRGWWK 142

Query: 125 DSKDED--NDRAPGKTATYNSQQRDEMPQ--REDNHTRHRDGSSKVEVDAPTPARKRPAF 184
           DSK++D  +DRA GKTATYNSQ+RDE+PQ  +EDNHTR RDGSSK+EVD+  PARKRPAF
Sbjct: 143 DSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRPAF 202

Query: 185 REKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKLNKHVTGDMGA 244
           REKKI  D+EN +KA +ASE+KK SDPH P+DGRERREERGRDTRYS+KL+KHVTGDM +
Sbjct: 203 REKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREERGRDTRYSDKLSKHVTGDMAS 262

Query: 245 KRDEIKRGGYPVRERYGN-GGGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANRS 304
           KRDE+KRGGY VRERYGN GGGGNYRGRDRFGGRQGY A +GGTRVEKWKHDLFHEANRS
Sbjct: 263 KRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPA-SGGTRVEKWKHDLFHEANRS 322

Query: 305 PTPKNEEDQIAKVEALLAS 319
           PTPKNEEDQIAKVEALLAS
Sbjct: 323 PTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of MS012401 vs. NCBI nr
Match: XP_023521659.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 478.0 bits (1229), Expect = 6.3e-131
Identity = 259/319 (81.19%), Postives = 288/319 (90.28%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRSRRDRK LEEKLSRNSSSH++DNKDRDQKHELRH GQ++ PHESSLALDS PEGG 
Sbjct: 23  SPKRSRRDRKTLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDVTPHESSLALDSHPEGG- 82

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
           VSK AN+NSD  R+GGTK SLNPTEV R RSYFQH++RG+AGQVGRSFGRS++S RGWWK
Sbjct: 83  VSKGANRNSD-EREGGTKRSLNPTEVPRSRSYFQHDKRGSAGQVGRSFGRSSSSGRGWWK 142

Query: 125 DSKDED--NDRAPGKTATYNSQQRDEMPQ--REDNHTRHRDGSSKVEVDAPTPARKRPAF 184
           DSK++D  +DRA GKTATYNSQ+RDE+PQ  +EDNHTR RDGSSK+EVD+  PARKRPAF
Sbjct: 143 DSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRPAF 202

Query: 185 REKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKLNKHVTGDMGA 244
           REKKI  D+EN +KA +ASE+KK SDPH P+DGRERREERGRDTRYS+KL+KHVTGDM +
Sbjct: 203 REKKITPDNENFEKAGMASESKKLSDPHQPQDGRERREERGRDTRYSDKLSKHVTGDMAS 262

Query: 245 KRDEIKRGGYPVRERYGN-GGGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANRS 304
           KRDE+KRGGY VRERYGN GGGGNYRGRDRFGGRQGY A +GGTRVEKWKHDLFHEANRS
Sbjct: 263 KRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPA-SGGTRVEKWKHDLFHEANRS 322

Query: 305 PTPKNEEDQIAKVEALLAS 319
           PTPKNEEDQIAKVEALLAS
Sbjct: 323 PTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of MS012401 vs. NCBI nr
Match: XP_022984546.1 (pre-mRNA-splicing factor CWC25 isoform X1 [Cucurbita maxima])

HSP 1 Score: 476.1 bits (1224), Expect = 2.4e-130
Identity = 258/319 (80.88%), Postives = 288/319 (90.28%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRSRRDRKPLEEKLSRNSSSH++DNKDRDQKHELRH GQ++ PHESSLALDS PEGG 
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDVTPHESSLALDSHPEGG- 82

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
           VSK AN+NSD  R+GGTK +LNPTEV R RSYFQH++RG+AGQVGRSFGRS++S RGWWK
Sbjct: 83  VSKGANRNSD-EREGGTKRALNPTEVPRSRSYFQHDKRGSAGQVGRSFGRSSSSGRGWWK 142

Query: 125 DSKDED--NDRAPGKTATYNSQQRDEMPQ--REDNHTRHRDGSSKVEVDAPTPARKRPAF 184
           DSK++D  +DRA GKTATYNSQ+RDE+PQ  +EDNHTR RDGSSK+EVD+  PARKRPAF
Sbjct: 143 DSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRPAF 202

Query: 185 REKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKLNKHVTGDMGA 244
           REKKI  D+EN +KA +ASE+KK SDPH P+DGRERREERGRDTRYS+KL+KHVTGDM +
Sbjct: 203 REKKITPDNENFEKAGMASESKKLSDPHPPQDGRERREERGRDTRYSDKLSKHVTGDMAS 262

Query: 245 KRDEIKRGGYPVRERYGN-GGGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANRS 304
           KRDE+KRGGY VRERYGN GGGGNYRGRDRFGGRQGY A +GGTRVEKWKHDLFHEANRS
Sbjct: 263 KRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPA-SGGTRVEKWKHDLFHEANRS 322

Query: 305 PTPKNEEDQIAKVEALLAS 319
           PTPKNEE QIAKVEALLAS
Sbjct: 323 PTPKNEEAQIAKVEALLAS 338

[Close]

BLAST of MS012401 vs. ExPASy TrEMBL
Match: A0A6J1FPJ0 (pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 4.7e-132
Identity = 260/319 (81.50%), Postives = 288/319 (90.28%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRSRRDRKPLEEKLSRNSSSH++DNKDRDQKHELRH GQ+  PHESSLALDS PEGG 
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDATPHESSLALDSHPEGG- 82

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
           VSK AN+NSD  R+GGTK SLNPTEV R RSYFQH++RG+AGQVGRSFGRS++S RGWWK
Sbjct: 83  VSKGANRNSD-EREGGTKRSLNPTEVPRSRSYFQHDKRGSAGQVGRSFGRSSSSGRGWWK 142

Query: 125 DSKDED--NDRAPGKTATYNSQQRDEMPQ--REDNHTRHRDGSSKVEVDAPTPARKRPAF 184
           DSK++D  +DRA GKTATYNSQ+RDE+PQ  +EDNHTR RDGSSK+EVD+  PARKRPAF
Sbjct: 143 DSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRPAF 202

Query: 185 REKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKLNKHVTGDMGA 244
           REKKI  D+EN +KA +ASE+KK SDPH P+DGRERREERGRDTRYS+KL+KHVTGDM +
Sbjct: 203 REKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREERGRDTRYSDKLSKHVTGDMAS 262

Query: 245 KRDEIKRGGYPVRERYGN-GGGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANRS 304
           KRDE+KRGGY VRERYGN GGGGNYRGRDRFGGRQGY A +GGTRVEKWKHDLFHEANRS
Sbjct: 263 KRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPA-SGGTRVEKWKHDLFHEANRS 322

Query: 305 PTPKNEEDQIAKVEALLAS 319
           PTPKNEEDQIAKVEALLAS
Sbjct: 323 PTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of MS012401 vs. ExPASy TrEMBL
Match: A0A6J1J5K1 (pre-mRNA-splicing factor CWC25 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 1.2e-130
Identity = 258/319 (80.88%), Postives = 288/319 (90.28%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRSRRDRKPLEEKLSRNSSSH++DNKDRDQKHELRH GQ++ PHESSLALDS PEGG 
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDVTPHESSLALDSHPEGG- 82

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
           VSK AN+NSD  R+GGTK +LNPTEV R RSYFQH++RG+AGQVGRSFGRS++S RGWWK
Sbjct: 83  VSKGANRNSD-EREGGTKRALNPTEVPRSRSYFQHDKRGSAGQVGRSFGRSSSSGRGWWK 142

Query: 125 DSKDED--NDRAPGKTATYNSQQRDEMPQ--REDNHTRHRDGSSKVEVDAPTPARKRPAF 184
           DSK++D  +DRA GKTATYNSQ+RDE+PQ  +EDNHTR RDGSSK+EVD+  PARKRPAF
Sbjct: 143 DSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRPAF 202

Query: 185 REKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKLNKHVTGDMGA 244
           REKKI  D+EN +KA +ASE+KK SDPH P+DGRERREERGRDTRYS+KL+KHVTGDM +
Sbjct: 203 REKKITPDNENFEKAGMASESKKLSDPHPPQDGRERREERGRDTRYSDKLSKHVTGDMAS 262

Query: 245 KRDEIKRGGYPVRERYGN-GGGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANRS 304
           KRDE+KRGGY VRERYGN GGGGNYRGRDRFGGRQGY A +GGTRVEKWKHDLFHEANRS
Sbjct: 263 KRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPA-SGGTRVEKWKHDLFHEANRS 322

Query: 305 PTPKNEEDQIAKVEALLAS 319
           PTPKNEE QIAKVEALLAS
Sbjct: 323 PTPKNEEAQIAKVEALLAS 338

[Close]

BLAST of MS012401 vs. ExPASy TrEMBL
Match: A0A6J1FQX4 (pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 7.2e-125
Identity = 250/318 (78.62%), Postives = 278/318 (87.42%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRSRRDRKPLEEKLSRNSSSH++DNKDRDQKHELRH GQ+  PHESSLALDS PEGG 
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDATPHESSLALDSHPEGG- 82

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
           VSK AN+NSD  R+GGTK SLNPTEV R RSYFQH++RG+AGQVGRSFGRS++S RGWWK
Sbjct: 83  VSKGANRNSD-EREGGTKRSLNPTEVPRSRSYFQHDKRGSAGQVGRSFGRSSSSGRGWWK 142

Query: 125 DSKDED--NDRAPGKTATYNSQQRDEMPQ--REDNHTRHRDGSSKVEVDAPTPARKRPAF 184
           DSK++D  +DRA GKTATYNSQ+RDE+PQ  +EDNHTR RDGSSK+EVD+  PARKRPAF
Sbjct: 143 DSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRPAF 202

Query: 185 REKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKLNKHVTGDMGA 244
           REKKI  D+EN +KA +ASE+KK SDPH P+DGRERREERGRDTRYS+KL+KHVTGDM +
Sbjct: 203 REKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREERGRDTRYSDKLSKHVTGDMAS 262

Query: 245 KRDEIKRGGYPVRERYGNGGGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANRSP 304
           KRDE+KR           GGGGNYRGRDRFGGRQGY A +GGTRVEKWKHDLFHEANRSP
Sbjct: 263 KRDEMKR-----------GGGGNYRGRDRFGGRQGYPA-SGGTRVEKWKHDLFHEANRSP 322

Query: 305 TPKNEEDQIAKVEALLAS 319
           TPKNEEDQIAKVEALLAS
Sbjct: 323 TPKNEEDQIAKVEALLAS 326

[Close]

BLAST of MS012401 vs. ExPASy TrEMBL
Match: A0A6J1JAV5 (pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.8e-123
Identity = 248/318 (77.99%), Postives = 278/318 (87.42%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRSRRDRKPLEEKLSRNSSSH++DNKDRDQKHELRH GQ++ PHESSLALDS PEGG 
Sbjct: 23  SPKRSRRDRKPLEEKLSRNSSSHVEDNKDRDQKHELRHEGQDVTPHESSLALDSHPEGG- 82

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
           VSK AN+NSD  R+GGTK +LNPTEV R RSYFQH++RG+AGQVGRSFGRS++S RGWWK
Sbjct: 83  VSKGANRNSD-EREGGTKRALNPTEVPRSRSYFQHDKRGSAGQVGRSFGRSSSSGRGWWK 142

Query: 125 DSKDED--NDRAPGKTATYNSQQRDEMPQ--REDNHTRHRDGSSKVEVDAPTPARKRPAF 184
           DSK++D  +DRA GKTATYNSQ+RDE+PQ  +EDNHTR RDGSSK+EVD+  PARKRPAF
Sbjct: 143 DSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPARKRPAF 202

Query: 185 REKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKLNKHVTGDMGA 244
           REKKI  D+EN +KA +ASE+KK SDPH P+DGRERREERGRDTRYS+KL+KHVTGDM +
Sbjct: 203 REKKITPDNENFEKAGMASESKKLSDPHPPQDGRERREERGRDTRYSDKLSKHVTGDMAS 262

Query: 245 KRDEIKRGGYPVRERYGNGGGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANRSP 304
           KRDE+KR           GGGGNYRGRDRFGGRQGY A +GGTRVEKWKHDLFHEANRSP
Sbjct: 263 KRDEMKR-----------GGGGNYRGRDRFGGRQGYPA-SGGTRVEKWKHDLFHEANRSP 322

Query: 305 TPKNEEDQIAKVEALLAS 319
           TPKNEE QIAKVEALLAS
Sbjct: 323 TPKNEEAQIAKVEALLAS 326

[Close]

BLAST of MS012401 vs. ExPASy TrEMBL
Match: A0A0A0KV12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.7e-121
Identity = 251/320 (78.44%), Postives = 276/320 (86.25%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRS+RDRK LEEKLSRNSSSH++DNK+RDQKHELR  GQ++IPHESSLAL+SKPEGG 
Sbjct: 23  SPKRSKRDRKTLEEKLSRNSSSHVEDNKERDQKHELRLVGQDMIPHESSLALESKPEGG- 82

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
               AN+NSD GRDGGTKHS+NPTEV R RSYFQH+ER NAGQVGRSFGRSATSERGWWK
Sbjct: 83  AGIGANRNSD-GRDGGTKHSVNPTEVPRSRSYFQHDERSNAGQVGRSFGRSATSERGWWK 142

Query: 125 DSK--DEDNDRAPGKTATYNSQQRDEMPQ--REDNHTRHRDGSSKVEVDAPTPARKRPAF 184
           DSK  D+D+DRA GK+ TY SQQRDE PQ  RED   RH DGSSK+EVDA TPARKRPAF
Sbjct: 143 DSKDPDKDSDRASGKSLTYKSQQRDEKPQAARED---RHHDGSSKLEVDALTPARKRPAF 202

Query: 185 REKKIAVDSENVDKAAVASETKKSSDPHHPEDGRERREERGRDTRYSEKL-NKHVTGDMG 244
           REKKI VD+E+ +K A+  E+KKS+D H  ++GRERREERGRD RYSEKL NKH  GDM 
Sbjct: 203 REKKITVDNEDGEKVAMVPESKKSNDLHQIQEGRERREERGRDPRYSEKLNNKHSNGDMA 262

Query: 245 AKRDEIKRGGYPVRERYGNG-GGGNYRGRDRFGGRQGYRAGAGGTRVEKWKHDLFHEANR 304
           +KRDE+KR GYPVRERYGNG GGGNYRGRDRFGGRQGYR    GTRVEKWKHDLFHEANR
Sbjct: 263 SKRDEMKRVGYPVRERYGNGSGGGNYRGRDRFGGRQGYR--TSGTRVEKWKHDLFHEANR 322

Query: 305 SPTPKNEEDQIAKVEALLAS 319
           SPTPKNEEDQIAKVEALL+S
Sbjct: 323 SPTPKNEEDQIAKVEALLSS 335

[Close]

BLAST of MS012401 vs. TAIR 10
Match: AT3G19650.1 (cyclin-related )

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-20
Identity = 107/321 (33.33%), Postives = 157/321 (48.91%), Query Frame = 0


Query: 5   SPKRSRRDRKPLEEKLSRNSSSHIDDNKDRDQKHELRHRGQNLIPHESSLALDSKPEGGV 64
           SPKRSRRD KP  E++       + D  D +     ++  Q+L   ++ L LD+      
Sbjct: 24  SPKRSRRDGKPEAERVLSKKDLDVRDGTDTE-----KNSRQSL--RDAPLELDAHG---- 83

Query: 65  VSKEANKNSDGGRDGGTKHSLNPTEVSRVRSYFQHEERGNAGQVGRSFGRSATSERGWWK 124
            S++ ++    G    TK + + ++V R R Y QH++R + G+V     R  TS RG W+
Sbjct: 84  -SRKDSEKKHSGHHETTKAAPHLSQVPRSRPYSQHDDRRSDGKV----DRRPTSVRGSWR 143

Query: 125 DSKDEDNDRAPGKTATYNSQQRDEMPQREDNHTRHRDGSSKVEVDAPTPARKRPAFREKK 184
            S+D+ N RA     + + +  D+   R D      D    +       +RKRPAFREKK
Sbjct: 144 SSRDQSNRRAGDDEKSQHRKDEDKSSWRHDRFRESDDTQGAL-------SRKRPAFREKK 203

Query: 185 IAVDSENVDKAAVASETKKSSDPHHPEDGRE----RREERGRDTRYSEKLNKHVTGDMGA 244
           I            A ET  ++D    EDG++     R +  R+ R +    +H    MG 
Sbjct: 204 I------------AEETGNNTDRTRTEDGKDTNLNNRRQNERNWRSNTHSERHERPAMG- 263

Query: 245 KRDEIKRGGYPVRERYGNGGGGNYRG-RDRF--GGRQGYRAGAGGTRVEKWKHDLFHEAN 304
            RD +    +   +  G G   +Y+  RDRF   GR G+ +G+     +KW HDLF EAN
Sbjct: 264 -RDRV----WNRDDERGAGSRQSYQADRDRFNGNGRSGF-SGSWTRNEKKWDHDLFDEAN 302

Query: 305 RSPTPKNEEDQIAKVEALLAS 319
           +SP    EE+QIAKVEALLAS
Sbjct: 324 KSPAKATEEEQIAKVEALLAS 302

The following BLAST results are available for this feature:

BLAST of MS012401 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548006.1	7.4e-132	81.50	pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] >XP_023548014.1...	[more]
XP_022942670.1	9.6e-132	81.50	pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata] >XP_02294267...	[more]
KAG6600285.1	2.8e-131	81.19	hypothetical protein SDJN03_05518, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023521659.1	6.3e-131	81.19	pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo]	[more]
XP_022984546.1	2.4e-130	80.88	pre-mRNA-splicing factor CWC25 isoform X1 [Cucurbita maxima]	[more]

BLAST of MS012401 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPJ0	4.7e-132	81.50	pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J5K1	1.2e-130	80.88	pre-mRNA-splicing factor CWC25 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FQX4	7.2e-125	78.62	pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JAV5	1.8e-123	77.99	pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0KV12	1.7e-121	78.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1	[more]

BLAST of MS012401 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19650.1	1.3e-20	33.33	cyclin-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..282
None	No IPR available	PANTHER	PTHR36364	OS03G0203000 PROTEIN	coord: 5..318

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012401.1	MS012401.1	mRNA