MS012392 (gene) Bitter gourd (TR) v1

Overview
NameMS012392
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBRCT domain-containing protein
Locationscaffold63: 381865 .. 381942 (+)
RNA-Seq ExpressionMS012392
SyntenyMS012392
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCACAT

mRNA sequence

CAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCACAT

Coding sequence (CDS)

CAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCACAT

Protein sequence

QGIWSSGMILALGARGPEFDSRNAPH
Homology
[Close]
BLAST of MS012392 vs. NCBI nr
Match: CAF1699910.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  QGIWSSGMILALGARGPEFDSRNAP 26
          QGIWSSGMILALGARGPEFDSRNAP
Sbjct: 15 QGIWSSGMILALGARGPEFDSRNAP 39

[Close]
BLAST of MS012392 vs. NCBI nr
Match: EOX94920.1 (Uncharacterized protein TCM_004519 [Theobroma cacao])

HSP 1 Score: 55.5 bits (132), Expect = 8.2e-05
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  QGIWSSGMILALGARGPEFDSRNAPH 27
          +G+WSSGMILALGARGPEFDSRNAP+
Sbjct: 21 KGVWSSGMILALGARGPEFDSRNAPY 46

[Close]
BLAST of MS012392 vs. NCBI nr
Match: GEW71266.1 (monodehydroascorbate reductase 4, peroxisomal [Tanacetum cinerariifolium])

HSP 1 Score: 55.5 bits (132), Expect = 8.2e-05
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QGIWSSGMILALGARGPEFDSRNAP 26
           +GIWSSGMILALGARGPEFDSRNAP
Sbjct: 473 EGIWSSGMILALGARGPEFDSRNAP 497

[Close]
BLAST of MS012392 vs. NCBI nr
Match: KAG6762591.1 (hypothetical protein POTOM_033102 [Populus tomentosa])

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  QGIWSSGMILALGARGPEFDSRNAP 26
          +GIWSSGMILALGARGPEFDSRNAP
Sbjct: 13 KGIWSSGMILALGARGPEFDSRNAP 37

[Close]
BLAST of MS012392 vs. NCBI nr
Match: KAF8046995.1 (hypothetical protein N665_3269s0004, partial [Sinapis alba])

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  QGIWSSGMILALGARGPEFDSRNAP 26
          +GIWSSGMILALGARGPEFDSRNAP
Sbjct: 41 RGIWSSGMILALGARGPEFDSRNAP 65

[Close]
BLAST of MS012392 vs. ExPASy TrEMBL
Match: A0A061DQC8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004519 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-05
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  QGIWSSGMILALGARGPEFDSRNAPH 27
          +G+WSSGMILALGARGPEFDSRNAP+
Sbjct: 21 KGVWSSGMILALGARGPEFDSRNAPY 46

[Close]
BLAST of MS012392 vs. ExPASy TrEMBL
Match: A0A3P6B491 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19803H PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-05
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 2  GIWSSGMILALGARGPEFDSRNAP 26
          GIWSSGMILALGARGPEFDSRNAP
Sbjct: 11 GIWSSGMILALGARGPEFDSRNAP 34

[Close]
BLAST of MS012392 vs. ExPASy TrEMBL
Match: A0A3P6BFV3 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19802H PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-05
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 2  GIWSSGMILALGARGPEFDSRNAP 26
          GIWSSGMILALGARGPEFDSRNAP
Sbjct: 16 GIWSSGMILALGARGPEFDSRNAP 39

[Close]
BLAST of MS012392 vs. ExPASy TrEMBL
Match: A0A2K1Z527 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G087300 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-05
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 2  GIWSSGMILALGARGPEFDSRNAP 26
          GIWSSGMILALGARGPEFDSRNAP
Sbjct: 2  GIWSSGMILALGARGPEFDSRNAP 25

[Close]
BLAST of MS012392 vs. ExPASy TrEMBL
Match: A0A078I2F6 (BnaC03g58850D protein OS=Brassica napus OX=3708 GN=BnaC03g58850D PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-05
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 2  GIWSSGMILALGARGPEFDSRNAP 26
          GIWSSGMILALGARGPEFDSRNAP
Sbjct: 11 GIWSSGMILALGARGPEFDSRNAP 34

The following BLAST results are available for this feature:
BLAST of MS012392 vs. NCBI nr
Match NameE-valueIdentityDescription
CAF1699910.13.7e-05100.00unnamed protein product [Brassica napus][more]
EOX94920.18.2e-0588.46Uncharacterized protein TCM_004519 [Theobroma cacao][more]
GEW71266.18.2e-0596.00monodehydroascorbate reductase 4, peroxisomal [Tanacetum cinerariifolium][more]
KAG6762591.11.1e-0496.00hypothetical protein POTOM_033102 [Populus tomentosa][more]
KAF8046995.11.1e-0496.00hypothetical protein N665_3269s0004, partial [Sinapis alba][more]
BLAST of MS012392 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS012392 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A061DQC84.0e-0588.46Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004519 PE=4 SV=1[more]
A0A3P6B4918.8e-05100.00Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19803H PE=4 SV=1[more]
A0A3P6BFV38.8e-05100.00Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19802H PE=4 SV=1[more]
A0A2K1Z5278.8e-05100.00Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G087300 PE=4 ... [more]
A0A078I2F68.8e-05100.00BnaC03g58850D protein OS=Brassica napus OX=3708 GN=BnaC03g58850D PE=4 SV=1[more]
BLAST of MS012392 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012392.1MS012392.1mRNA