MS012381 (gene) Bitter gourd (TR) v1

Overview


Name	MS012381
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Phytosulfokine-beta
Location	scaffold63: 323391 .. 323749 (+)
RNA-Seq Expression	MS012381
Synteny	MS012381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAACTTCTGACCACCTTCTTCACATTTCTCTCCCTTTTCTTCTTCTTCTTCTTCTTCTCCTCCTTGGCGATCGCTGTTGCCGCCCGGCCCGTGCCCGACTTTCCGAACGCTTTTCCAGCCACGACTCGTCATGGGGTATGTAAATTCATCAGAAATTTCTCAGCTTGATTTGGAAAACAAAAAAATAAGTAGTAAATTTTGTGCCTTTTTTTGTTGTTGTGGTGAAGTTGAAGGTTGTGGATGATGTTTTGGAGGAGGAGAGCTGTGGAGGGATTGGAGAAGAATATTGCTTGATGAGAAAAACTCTTGCAGCCCATCTTGATTATATCTACACAGATAACCAGGAGCCA

mRNA sequence

ATGGCTTCCAAACTTCTGACCACCTTCTTCACATTTCTCTCCCTTTTCTTCTTCTTCTTCTTCTTCTCCTCCTTGGCGATCGCTGTTGCCGCCCGGCCCGTGCCCGACTTTCCGAACGCTTTTCCAGCCACGACTCGTCATGGGTTGAAGGTTGTGGATGATGTTTTGGAGGAGGAGAGCTGTGGAGGGATTGGAGAAGAATATTGCTTGATGAGAAAAACTCTTGCAGCCCATCTTGATTATATCTACACAGATAACCAGGAGCCA

Coding sequence (CDS)

ATGGCTTCCAAACTTCTGACCACCTTCTTCACATTTCTCTCCCTTTTCTTCTTCTTCTTCTTCTTCTCCTCCTTGGCGATCGCTGTTGCCGCCCGGCCCGTGCCCGACTTTCCGAACGCTTTTCCAGCCACGACTCGTCATGGGTTGAAGGTTGTGGATGATGTTTTGGAGGAGGAGAGCTGTGGAGGGATTGGAGAAGAATATTGCTTGATGAGAAAAACTCTTGCAGCCCATCTTGATTATATCTACACAGATAACCAGGAGCCA

Protein sequence

MASKLLTTFFTFLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEESCGGIGEEYCLMRKTLAAHLDYIYTDNQEP

Homology

[Close]

BLAST of MS012381 vs. NCBI nr
Match: XP_022149343.1 (phytosulfokines-like [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 4.6e-39
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60
          MASKLLTTFFTFLSL FFFFFFSSLAI VAARPVPDFPNAFPATTRHGLKVVDDVLEEES
Sbjct: 1  MASKLLTTFFTFLSL-FFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60

Query: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 90
          CGGIGEEYCLMRKTLAAHLDYIYTDNQEP
Sbjct: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 88

[Close]

BLAST of MS012381 vs. NCBI nr
Match: XP_022941982.1 (phytosulfokines-like [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 6.6e-22
Identity = 62/89 (69.66%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60
          MASKL+T+ FTFL LFFF F   S   +V ARP+P   N  P TTR G KVVDDVLEEES
Sbjct: 1  MASKLVTSIFTFLFLFFFLF---SSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEES 60

Query: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 90
          C GIGEE+CLMRKTLAAH DYIYTD Q P
Sbjct: 61 C-GIGEEHCLMRKTLAAHADYIYTDKQRP 85

[Close]

BLAST of MS012381 vs. NCBI nr
Match: XP_004150263.1 (phytosulfokines 3 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 60/89 (67.42%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60
          MASKL T+ + F  LF F FF SS    +AARPVP F NAF  T+R G+ V DDVLEEES
Sbjct: 1  MASKLFTSIYPF--LFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEES 60

Query: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 90
          C  IGEEYCLMRKTLAAH+DYIYTD Q+P
Sbjct: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]

BLAST of MS012381 vs. NCBI nr
Match: KAG6600274.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-21
Identity = 61/89 (68.54%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60
          MASKL+T+ FTFL LFFF F   S   +V A+P+P   N  P TTR G KVVDDVLEEES
Sbjct: 1  MASKLVTSIFTFLFLFFFLF---SSTTSVFAQPIPGSTNTSPRTTRDGFKVVDDVLEEES 60

Query: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 90
          C GIGEE+CLMRKTLAAH DYIYTD Q P
Sbjct: 61 C-GIGEEHCLMRKTLAAHADYIYTDKQRP 85

[Close]

BLAST of MS012381 vs. NCBI nr
Match: XP_038905348.1 (pre-mRNA-processing protein 40A-like isoform X4 [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-21
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 29   VAARPVPDFPNAFPATTRHGLKVVDDVLEEESCGGIGEEYCLMRKTLAAHLDYIYTDNQE 88
            VAARPVP F NAFP T+R GLKVVDDVLEEESC  IGEEYCLMRKTLAAH+DYIYTD+Q+
Sbjct: 1073 VAARPVPGFSNAFPETSRDGLKVVDDVLEEESCDEIGEEYCLMRKTLAAHVDYIYTDDQK 1132

Query: 89   P 90
            P
Sbjct: 1133 P 1133

[Close]

BLAST of MS012381 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-10
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60
          M+SK +T     ++L F      SL++A AARP+       PA +   + V+ + + +E+
Sbjct: 1  MSSKAIT--LLLIALLF------SLSLAQAARPLQ------PADSTKSVHVIPEKVHDEA 60

Query: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 90
          C G+GEE CLMR+TL AH+DYIYT +  P
Sbjct: 61 CEGVGEEECLMRRTLTAHVDYIYTQDHNP 75

[Close]

BLAST of MS012381 vs. ExPASy Swiss-Prot
Match: Q9M2Y0 (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-07
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 12 FLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVD-DVLEEESCGGIGEEYCL 71
          F ++F       S  +  AAR  P    A   +  + +K ++ D +EEESC GIGEE CL
Sbjct: 4  FTTIFIMALLLCS-TLTYAARLTPTTTTAL--SRENSVKEIEGDKVEEESCNGIGEEECL 63

Query: 72 MRKTLAAHLDYIYTDNQEP 90
          +R++L  H DYIYT N +P
Sbjct: 64 IRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of MS012381 vs. ExPASy Swiss-Prot
Match: Q9FEB4 (Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-04
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 0


Query: 58 EESCGGIGEEYC-LMRKTLAAHLDYIYTDNQEP 90
          E  C G+GEE C L+R+TL AH DYIYT N  P
Sbjct: 45 EVICEGVGEEECFLIRRTLVAHTDYIYTQNHNP 77

[Close]

BLAST of MS012381 vs. ExPASy Swiss-Prot
Match: Q9AR88 (Phytosulfokines 4 OS=Oryza sativa subsp. japonica OX=39947 GN=PSK4 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.5e-04
Identity = 28/69 (40.58%), Postives = 33/69 (47.83%), Query Frame = 0


Query: 20 FFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEESCGGI----GEEYCLMRKTL 79
          F  SS  +A+A RP P        TT    +      + E  GG     GEE CL R+TL
Sbjct: 18 FAASSATVAMAGRPTP--------TTSLDEEAAQAAAQSEIGGGCKEGEGEEECLARRTL 77

Query: 80 AAHLDYIYT 85
           AH DYIYT
Sbjct: 78 TAHTDYIYT 78

[Close]

BLAST of MS012381 vs. ExPASy TrEMBL
Match: A0A6J1D6J2 (Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111017778 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60
          MASKLLTTFFTFLSL FFFFFFSSLAI VAARPVPDFPNAFPATTRHGLKVVDDVLEEES
Sbjct: 1  MASKLLTTFFTFLSL-FFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60

Query: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 90
          CGGIGEEYCLMRKTLAAHLDYIYTDNQEP
Sbjct: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 88

[Close]

BLAST of MS012381 vs. ExPASy TrEMBL
Match: A0A6J1FNZ6 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447189 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.2e-22
Identity = 62/89 (69.66%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60
          MASKL+T+ FTFL LFFF F   S   +V ARP+P   N  P TTR G KVVDDVLEEES
Sbjct: 1  MASKLVTSIFTFLFLFFFLF---SSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEES 60

Query: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 90
          C GIGEE+CLMRKTLAAH DYIYTD Q P
Sbjct: 61 C-GIGEEHCLMRKTLAAHADYIYTDKQRP 85

[Close]

BLAST of MS012381 vs. ExPASy TrEMBL
Match: A0A0A0KY18 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 60/89 (67.42%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60
          MASKL T+ + F  LF F FF SS    +AARPVP F NAF  T+R G+ V DDVLEEES
Sbjct: 1  MASKLFTSIYPF--LFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEES 60

Query: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 90
          C  IGEEYCLMRKTLAAH+DYIYTD Q+P
Sbjct: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]

BLAST of MS012381 vs. ExPASy TrEMBL
Match: A0A6J1E4U5 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111430788 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 62/89 (69.66%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFFSSLAIAVAAR--PVPDFPNAFPATTRHGLKVVDDVLEE 60
          MASKLLT+ FTFL   F FF F S A  + AR  PVP F NAFP T+R GLK  DD LEE
Sbjct: 1  MASKLLTSIFTFL---FLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEE 60

Query: 61 ESCGGIGEEYCLMRKTLAAHLDYIYTDNQ 88
          ESC  IGEEYCLMRKTLAAH DYIYTD+Q
Sbjct: 61 ESCEEIGEEYCLMRKTLAAHADYIYTDSQ 86

[Close]

BLAST of MS012381 vs. ExPASy TrEMBL
Match: A0A5A7TSX1 (Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00410 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 60/89 (67.42%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVDDVLEEES 60
          MASKL T+ + F  LF F FF SS    VAARPVP F NAF  T+R G  VVDDVLEEES
Sbjct: 1  MASKLFTSIYPF--LFLFLFFSSSSTTPVAARPVPGFSNAFLGTSRDG--VVDDVLEEES 60

Query: 61 CGGIGEEYCLMRKTLAAHLDYIYTDNQEP 90
          C  IGE+YCLMRKT+AAH+DYIYTD+Q+P
Sbjct: 61 CDEIGEDYCLMRKTVAAHVDYIYTDSQKP 85

[Close]

BLAST of MS012381 vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-08
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 12 FLSLFFFFFFFSSLAIAVAARPVPDFPNAFPATTRHGLKVVD-DVLEEESCGGIGEEYCL 71
          F ++F       S  +  AAR  P    A   +  + +K ++ D +EEESC GIGEE CL
Sbjct: 4  FTTIFIMALLLCS-TLTYAARLTPTTTTAL--SRENSVKEIEGDKVEEESCNGIGEEECL 63

Query: 72 MRKTLAAHLDYIYTDNQEP 90
          +R++L  H DYIYT N +P
Sbjct: 64 IRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of MS012381 vs. TAIR 10
Match: AT4G37720.1 (phytosulfokine 6 precursor )

HSP 1 Score: 48.1 bits (113), Expect = 4.2e-06
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 27 IAVAARPVPDFPNAF---PATTRHGLKVVDDVLEE---ESCGGIGEEYCLMRKTLAAHLD 85
          +  +ARP P +  +F   PA T   L++++  L E   ESC    +E CL+R+TL AHLD
Sbjct: 19 LTCSARPEPAYFASFTTSPADTL-SLEMIESKLHEVAGESCDKEDDEDCLVRRTLTAHLD 78

[Close]

BLAST of MS012381 vs. TAIR 10
Match: AT5G65870.1 (phytosulfokine 5 precursor )

HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 0


Query: 58 EESCGGIGEEYC-LMRKTLAAHLDYIYTDNQEP 90
          E  C G+GEE C L+R+TL AH DYIYT N  P
Sbjct: 45 EVICEGVGEEECFLIRRTLVAHTDYIYTQNHNP 77

[Close]

BLAST of MS012381 vs. TAIR 10
Match: AT2G22860.1 (phytosulfokine 2 precursor )

HSP 1 Score: 42.7 bits (99), Expect = 1.8e-04
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 50 KVVDDVLEEESCGGIGEEYCLMRKTLAAHLDYIYTDNQE 89
          K+ D  + +E+CG   +E CLMR+TL AH DYIYT  ++
Sbjct: 48 KLDDMHMVDENCGA-DDEDCLMRRTLVAHTDYIYTQKKK 85

The following BLAST results are available for this feature:

BLAST of MS012381 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149343.1	4.6e-39	97.75	phytosulfokines-like [Momordica charantia]	[more]
XP_022941982.1	6.6e-22	69.66	phytosulfokines-like [Cucurbita moschata]	[more]
XP_004150263.1	1.1e-21	67.42	phytosulfokines 3 [Cucumis sativus]	[more]
KAG6600274.1	1.9e-21	68.54	Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038905348.1	3.3e-21	83.61	pre-mRNA-processing protein 40A-like isoform X4 [Benincasa hispida]	[more]

BLAST of MS012381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FS10	7.9e-10	40.45	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]
Q9M2Y0	4.8e-07	40.51	Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2	[more]
Q9FEB4	2.9e-04	60.61	Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1	[more]
Q9AR88	8.5e-04	40.58	Phytosulfokines 4 OS=Oryza sativa subsp. japonica OX=39947 GN=PSK4 PE=1 SV=1	[more]

BLAST of MS012381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6J2	2.2e-39	97.75	Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111017778 PE=3 SV=1	[more]
A0A6J1FNZ6	3.2e-22	69.66	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447189 PE=3 SV=1	[more]
A0A0A0KY18	5.5e-22	67.42	Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=3 SV=1	[more]
A0A6J1E4U5	1.6e-21	69.66	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111430788 PE=3 SV=1	[more]
A0A5A7TSX1	1.0e-20	67.42	Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G0...	[more]

BLAST of MS012381 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49780.1	3.4e-08	40.51	phytosulfokine 4 precursor	[more]
AT4G37720.1	4.2e-06	43.75	phytosulfokine 6 precursor	[more]
AT5G65870.1	2.1e-05	60.61	phytosulfokine 5 precursor	[more]
AT2G22860.1	1.8e-04	48.72	phytosulfokine 2 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 54..88 e-value: 2.0E-10 score: 41.6
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 1..89
None	No IPR available	PANTHER	PTHR33285:SF1	PHYTOSULFOKINES 3	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012381.1	MS012381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell population proliferation
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity