MS012358 (gene) Bitter gourd (TR) v1

Overview
NameMS012358
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC103494847
Locationscaffold63: 178000 .. 178485 (+)
RNA-Seq ExpressionMS012358
SyntenyMS012358
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTCGCGATTAATCTTTTTCGTCTCCCTCACGGCCGCAGTGAGATCCACAGTTTTCGATTTCAATCTCCACCGTCGCCGGCCCTTTCTCGGAACCGGCTCCCGTGCCAAATCTCCTACTGCATAAAGAAACTCAGCGACGCGGAGCTCGCCTCCGATCTCGCAACGGAAGTTGCGAAAATGAGCACCAATTTGATTCAGAGGGAGGAGGCGATGAAGAAGAGCAAAGAGTTTTTGTTCACGGAGCTCTGCGGATTTCTAGGTCTGAAATCGGAGGAGACGAAGAAGAGCTGGAAAAAGATGGACGAAGAGGCGAAATTGGCATTGGTTAAAGAGTTCGTTACGGAGTGGGGGTTCAATTTTCAGCCATTGTCGCCGAGGTCTGTGAAGGAATTGGTGGAGGAATACGTTAATGGAGAAAATATTTCTGCGATTTCTTCTGCTCCATCGTTGATTCCTTCATTGAAGAGAATTATGGGATTG

mRNA sequence

ATGATTTTCGCGATTAATCTTTTTCGTCTCCCTCACGGCCGCAGTGAGATCCACAGTTTTCGATTTCAATCTCCACCGTCGCCGGCCCTTTCTCGGAACCGGCTCCCGTGCCAAATCTCCTACTGCATAAAGAAACTCAGCGACGCGGAGCTCGCCTCCGATCTCGCAACGGAAGTTGCGAAAATGAGCACCAATTTGATTCAGAGGGAGGAGGCGATGAAGAAGAGCAAAGAGTTTTTGTTCACGGAGCTCTGCGGATTTCTAGGTCTGAAATCGGAGGAGACGAAGAAGAGCTGGAAAAAGATGGACGAAGAGGCGAAATTGGCATTGGTTAAAGAGTTCGTTACGGAGTGGGGGTTCAATTTTCAGCCATTGTCGCCGAGGTCTGTGAAGGAATTGGTGGAGGAATACGTTAATGGAGAAAATATTTCTGCGATTTCTTCTGCTCCATCGTTGATTCCTTCATTGAAGAGAATTATGGGATTG

Coding sequence (CDS)

ATGATTTTCGCGATTAATCTTTTTCGTCTCCCTCACGGCCGCAGTGAGATCCACAGTTTTCGATTTCAATCTCCACCGTCGCCGGCCCTTTCTCGGAACCGGCTCCCGTGCCAAATCTCCTACTGCATAAAGAAACTCAGCGACGCGGAGCTCGCCTCCGATCTCGCAACGGAAGTTGCGAAAATGAGCACCAATTTGATTCAGAGGGAGGAGGCGATGAAGAAGAGCAAAGAGTTTTTGTTCACGGAGCTCTGCGGATTTCTAGGTCTGAAATCGGAGGAGACGAAGAAGAGCTGGAAAAAGATGGACGAAGAGGCGAAATTGGCATTGGTTAAAGAGTTCGTTACGGAGTGGGGGTTCAATTTTCAGCCATTGTCGCCGAGGTCTGTGAAGGAATTGGTGGAGGAATACGTTAATGGAGAAAATATTTCTGCGATTTCTTCTGCTCCATCGTTGATTCCTTCATTGAAGAGAATTATGGGATTG

Protein sequence

MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVAKMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGFNFQPLSPRSVKELVEEYVNGENISAISSAPSLIPSLKRIMGL
Homology
[Close]
BLAST of MS012358 vs. NCBI nr
Match: XP_022149245.1 (uncharacterized protein LOC111017712 [Momordica charantia])

HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60
           MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA
Sbjct: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60

Query: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120
           KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF
Sbjct: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120

Query: 121 NFQPLSPRSVKELVEEYVNGENISAISSAPSLIPSLKRIMGL 163
           NFQPLSPRSVKELVEEYVNGENISAISSAPSLIPSLKRIMGL
Sbjct: 121 NFQPLSPRSVKELVEEYVNGENISAISSAPSLIPSLKRIMGL 162

[Close]
BLAST of MS012358 vs. NCBI nr
Match: XP_023551996.1 (uncharacterized protein LOC111809798 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 127/163 (77.91%), Postives = 141/163 (86.50%), Query Frame = 0 

Query: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60
           M+FAINL R P    +IH+F+FQS PSPALSR+RLPCQI+YC KK SDA+LASDLA EVA
Sbjct: 1   MMFAINL-RFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVA 60

Query: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120
           K++TNLIQ EEAM KS+E LFTELCGFLGLKSEETK+ WKKMDEEAKL LVKEFV+EWGF
Sbjct: 61  KINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLVKEFVSEWGF 120

Query: 121 NFQPLSPRSVKELVEEYV-NGENISAISSAPSLIPSLKRIMGL 163
           NFQPLSPRS KE+VEEYV NGEN  AISSA SLI SLK+ MGL
Sbjct: 121 NFQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKTMGL 162

[Close]
BLAST of MS012358 vs. NCBI nr
Match: KAG7014917.1 (hypothetical protein SDJN02_22548, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 240.7 bits (613), Expect = 8.6e-60
Identity = 125/163 (76.69%), Postives = 141/163 (86.50%), Query Frame = 0 

Query: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60
           M+FAINL R P    +IH+F+FQS PSPALSR+RLPCQI+YC KK SDA+LASDLA EVA
Sbjct: 1   MMFAINL-RFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVA 60

Query: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120
           K++TNLIQ EEAM KS+E LFTELCGFLGLKSEETK+ WKKMDEEAKL L+KEFV+EWGF
Sbjct: 61  KINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGF 120

Query: 121 NFQPLSPRSVKELVEEYV-NGENISAISSAPSLIPSLKRIMGL 163
           NFQPLSPRS KE+VEEYV NGEN  AISSA SLI SLK+ +GL
Sbjct: 121 NFQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 162

[Close]
BLAST of MS012358 vs. NCBI nr
Match: XP_022922671.1 (uncharacterized protein LOC111430603 [Cucurbita moschata])

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59
Identity = 125/163 (76.69%), Postives = 141/163 (86.50%), Query Frame = 0 

Query: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60
           M+FAINL R P    +IH+F+FQS PSPALSR+RLPCQI+YC KK SDA+LASDLA EVA
Sbjct: 1   MMFAINL-RFPSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVA 60

Query: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120
           K++TNLIQ EEAM KS+E LFTELCGFLGLKSEETK+ WKKMDEEAKL L+KEFV+EWGF
Sbjct: 61  KINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGF 120

Query: 121 NFQPLSPRSVKELVEEYV-NGENISAISSAPSLIPSLKRIMGL 163
           NFQPLSPRS KE+VEEYV NGEN  AISSA SLI SLK+ +GL
Sbjct: 121 NFQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 162

[Close]
BLAST of MS012358 vs. NCBI nr
Match: KAG6576890.1 (hypothetical protein SDJN03_24464, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 124/162 (76.54%), Postives = 140/162 (86.42%), Query Frame = 0 

Query: 2   IFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVAK 61
           +FAINL R P    +IH+F+FQS PSPALSR+RLPCQI+YC KK SDA+LASDLA EVAK
Sbjct: 1   MFAINL-RFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60

Query: 62  MSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGFN 121
           ++TNLIQ EEAM KS+E LFTELCGFLGLKSEETK+ WKKMDEEAKL L+KEFV+EWGFN
Sbjct: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120

Query: 122 FQPLSPRSVKELVEEYV-NGENISAISSAPSLIPSLKRIMGL 163
           FQPLSPRS KE+VEEYV NGEN  AISSA SLI SLK+ +GL
Sbjct: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 161

[Close]
BLAST of MS012358 vs. ExPASy TrEMBL
Match: A0A6J1D577 (uncharacterized protein LOC111017712 OS=Momordica charantia OX=3673 GN=LOC111017712 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.2e-84
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60
           MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA
Sbjct: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60

Query: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120
           KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF
Sbjct: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120

Query: 121 NFQPLSPRSVKELVEEYVNGENISAISSAPSLIPSLKRIMGL 163
           NFQPLSPRSVKELVEEYVNGENISAISSAPSLIPSLKRIMGL
Sbjct: 121 NFQPLSPRSVKELVEEYVNGENISAISSAPSLIPSLKRIMGL 162

[Close]
BLAST of MS012358 vs. ExPASy TrEMBL
Match: A0A6J1E4R4 (uncharacterized protein LOC111430603 OS=Cucurbita moschata OX=3662 GN=LOC111430603 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 5.4e-60
Identity = 125/163 (76.69%), Postives = 141/163 (86.50%), Query Frame = 0 

Query: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60
           M+FAINL R P    +IH+F+FQS PSPALSR+RLPCQI+YC KK SDA+LASDLA EVA
Sbjct: 1   MMFAINL-RFPSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVA 60

Query: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120
           K++TNLIQ EEAM KS+E LFTELCGFLGLKSEETK+ WKKMDEEAKL L+KEFV+EWGF
Sbjct: 61  KINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGF 120

Query: 121 NFQPLSPRSVKELVEEYV-NGENISAISSAPSLIPSLKRIMGL 163
           NFQPLSPRS KE+VEEYV NGEN  AISSA SLI SLK+ +GL
Sbjct: 121 NFQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 162

[Close]
BLAST of MS012358 vs. ExPASy TrEMBL
Match: A0A6J1J388 (uncharacterized protein LOC111482994 OS=Cucurbita maxima OX=3661 GN=LOC111482994 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.8e-59
Identity = 125/163 (76.69%), Postives = 140/163 (85.89%), Query Frame = 0 

Query: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60
           MIFAINL R P    +IH+F+FQS PS ALSR+RLPCQI+YC KK SDA+LASDLA EVA
Sbjct: 1   MIFAINL-RFPRVHGQIHNFQFQSWPSSALSRSRLPCQITYCRKKFSDADLASDLAMEVA 60

Query: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120
           K++TNLIQ EEAM KS+E LFT+LCGFL LKSEETK+ WKKMDEEAKL LVKEFV+EWGF
Sbjct: 61  KINTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWGF 120

Query: 121 NFQPLSPRSVKELVEEYV-NGENISAISSAPSLIPSLKRIMGL 163
           NFQPLSPRSVKE+VEEYV NGEN  AISSA SLI SLK+ +GL
Sbjct: 121 NFQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIGL 162

[Close]
BLAST of MS012358 vs. ExPASy TrEMBL
Match: A0A0A0KYF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179140 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.8e-59
Identity = 126/162 (77.78%), Postives = 138/162 (85.19%), Query Frame = 0 

Query: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60
           MI AINL RLP     IHSFRFQ  PSP LSRNR+P QI+YC KKLSDA+LASDLATEVA
Sbjct: 1   MISAINL-RLP-----IHSFRFQPSPSPTLSRNRMPRQITYCRKKLSDADLASDLATEVA 60

Query: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120
           K++TNLIQREEAMKKS+EFLFTELC FLGLKSEETK+ W KM+EEAKL LVKEFV+EWGF
Sbjct: 61  KINTNLIQREEAMKKSREFLFTELCEFLGLKSEETKRKWMKMEEEAKLRLVKEFVSEWGF 120

Query: 121 NFQPLSPRSVKELVEEYVNGENISAISSAPSLIPSLKRIMGL 163
           NFQPLS R VKE+VEEYVNGEN+  ISSA S I SLK+ MGL
Sbjct: 121 NFQPLSGRCVKEMVEEYVNGENLYGISSASSFISSLKKTMGL 156

[Close]
BLAST of MS012358 vs. ExPASy TrEMBL
Match: A0A1S3BZE3 (LOW QUALITY PROTEIN: uncharacterized protein LOC103494847 OS=Cucumis melo OX=3656 GN=LOC103494847 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 119/162 (73.46%), Postives = 135/162 (83.33%), Query Frame = 0 

Query: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60
           MI AINL R P G  EIH+FRFQ  PSP L RNR+P QI+YC KKLSDA+LA DLATEVA
Sbjct: 1   MISAINL-RPPRG--EIHNFRFQPSPSPTLFRNRMPRQITYCRKKLSDADLAFDLATEVA 60

Query: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120
           K++TNLIQREEAMKKS+ F++  +  FLGLKSEETK+ WKKM+EEAKL LVKEFV+EWGF
Sbjct: 61  KINTNLIQREEAMKKSRAFVYRAV-EFLGLKSEETKRKWKKMEEEAKLRLVKEFVSEWGF 120

Query: 121 NFQPLSPRSVKELVEEYVNGENISAISSAPSLIPSLKRIMGL 163
           NFQPLS R VKE+VEEYVNGEN+  ISSA SLI SLK+ MGL
Sbjct: 121 NFQPLSGRCVKEMVEEYVNGENLYGISSASSLISSLKKTMGL 158

[Close]
BLAST of MS012358 vs. TAIR 10
Match: AT5G64480.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-24
Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = 0 

Query: 44  KKLSDAELASDLATEVAKMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMD 103
           K ++D+ELA+DLA E+ K +T   QR EAMKKS E L+ E C  + LK +E K  W K+ 
Sbjct: 58  KIMTDSELATDLAREIGKANTVAEQRREAMKKSGEILWAEFCRHMDLKEDEMKIKWNKIG 117

Query: 104 EEAKLALVKEFVTEWGFNFQPLSPRSVKELVEE-------YVNGENISAISSAPSLIPSL 162
           EE KL LV+EFV EW  +FQPLS  SVKE+V++        +   + S++SS   L P L
Sbjct: 118 EEEKLVLVREFVDEWAGDFQPLSITSVKEMVDQECLDSDKTIESSSSSSMSSFSGLFPGL 177

The following BLAST results are available for this feature:
BLAST of MS012358 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149245.11.9e-83100.00uncharacterized protein LOC111017712 [Momordica charantia][more]
XP_023551996.11.7e-6077.91uncharacterized protein LOC111809798 [Cucurbita pepo subsp. pepo][more]
KAG7014917.18.6e-6076.69hypothetical protein SDJN02_22548, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022922671.11.1e-5976.69uncharacterized protein LOC111430603 [Cucurbita moschata][more]
KAG6576890.13.3e-5976.54hypothetical protein SDJN03_24464, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MS012358 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS012358 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D5779.2e-84100.00uncharacterized protein LOC111017712 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1E4R45.4e-6076.69uncharacterized protein LOC111430603 OS=Cucurbita moschata OX=3662 GN=LOC1114306... [more]
A0A6J1J3887.8e-5976.69uncharacterized protein LOC111482994 OS=Cucurbita maxima OX=3661 GN=LOC111482994... [more]
A0A0A0KYF67.8e-5977.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179140 PE=4 SV=1[more]
A0A1S3BZE31.3e-5373.46LOW QUALITY PROTEIN: uncharacterized protein LOC103494847 OS=Cucumis melo OX=365... [more]
BLAST of MS012358 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G64480.13.6e-2448.00unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012358.1MS012358.1mRNA