MS012339 (gene) Bitter gourd (TR) v1

Overview


Name	MS012339
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	MADS-box transcription factor 22
Location	scaffold63: 52874 .. 57114 (+)
RNA-Seq Expression	MS012339
Synteny	MS012339

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCGGCAGAAAATAGAGATAAAGAAGATAGACAATATTGCTGCAAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGGCTATTCAAAAAGGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGACTACTCAACCTCAAGGTTTTTTTCTTCTTTTTTTTTTTTCTCTAGAAATATTACTCATTTTGAGCTCTACTTTCCATATTTAGATATGTTTTTTTGTTGGGTTTTTTTTATCTTCTGAGAGGAAAAAAAGGGTCTTAAAAAGATTGGATTTTTTTTAGATTTTTTATGGAAATGGAGCATTTTGTAGATTATTGTTCATGATCTTTAATTGTTTTAATTAAGAGTGTGAGCTTCTGGCTACTTTGGTATTGTAAATATTATGATTATCAAGTGGGAATGTTTAAATTATTGGTAATTTTATAGATGTGAAGAGCTTTAATTTGGTTTATTTTGAAATTATCTGCTAACTATGACATCAAAAGTGATTATTGATCTACACCTCACAACTCCATAAAATATCAAACTTTGTTGTTGCAAGAATCTCTCTCTTTAATTATGTCATGTTGATTGTTGCCTATGCTTGCATTTTATTATATTGATGTCTAATTTCAAATTACCATGTTCAAATTTTGCATCATTATTATCCTGCATTTAAGGATTAAATTTCAATATCCATAGAAATTTTGGGGTCTTGGTTTTTTTTTTTTTTTGATTTATTTATTTGATTTATTTACTATTATTATTATTTTTTTTTTGGTAGAAATGTGGATAAAAATATCAATTTTGTAGAAGCCCTTTTTTAGGGCTTTTGAGATCTTGGTAAAACTTTTCTAAAGACTTCTGTAATATTGTGAAATCTTTTCTTTAACTGTTGGATTTTTAGGGGATTGCTTTTCCCTTTTATATATATATATAATATGTTAATATCATCTGTATTACACTTTTAAAAGAAACTATACATTTTATTATTAGTATTTTTTTGTGTTTCATCAATATTTTTATGATATATAGAAAATATCGATTTACATTAATTTTGATGTCTAATTAACCTTCTGATTTACAAAAACCTAGACATGCCAATTGATTTATTATTATTTTTCTTACGATAAAACGTTTATTATATGCCTAGTGATATTATATTATTATTATTATTATTATTTCCTTCTCATTTTTGCAGTGTTTTTGTACCTTTTTCTGTGTAAACAATGTATATTATATACATTCACGAACATTATATTATACACAATCACACATACCCCAATAGATTGTATAGCTCACTTGCATCATTATGTTGTTGGTTTTAAAAAAATTTCCAATGCCTCCTTGGAATTTGAGCATTTAGCTTATTAATTTTTATCCCCTAATTGTTGTTATATTAATTATTATTCTTCTTTCACTACAAACTGTAATTTTAGATGTGTTTGAATTGAACACATATTATAGGATTGGACGAATTGCAATTAATAAAATGCATATAAATTGAATTTAGTTAAATGTCATGAAAATAATGAAGAAAGTATATATATGCTACATGTATATCATATAATTATGGAAGTGTGGTTCCATTTATTGATTTTTATGGTAAAACTAACACATATTGACGTAATTGTTGCATATTTACACGTGAAGGTAATGTGTATTAAATATTTGTGAATATTTATATATTGTTTTTTCGGTTGGGGTCGGACCATCGATCTTAGAGATAGCAATAGATGTTTTATCTACTTAACTATGCTGGGACTGGGACGTATAGGATTCTCACCTTTTTTGCCCAAACTTGAGCAATAATCTTGTTTTCAAAATTCTAGTGTTAGAGGCTGCTGTTCTATGGGGTTTATGGGACTAAGCGAGAAATAACAGAATCTTTAGAGGGCTGGAATTGAGAGACGATCGTGGCAGGAGGGGTGGGCTCTTGCTCGGTTTCATGTTTCCCTTCTTTGTATTCACTTCTTAGGTCGTTTAATCTTGCTAGATTGGATCGGAGCCCATTATTTTAATTTAGTTTCTTTTTGTTGGGTTATTTTATGTCGTATGTCCTTTTATATTCTTTCATTCTTCTTAATGATAGCTCGGTTTTCATCCAAAGAAAATATATATATATATAGAGGAACTGAGAGACATGTTTTTTTTCTTCTTAATTTGCATGAAGCATGCAGGAGTTACTGAGAAGACAAAACATGGTACCAGAGAATAATAACTTTACCCAACCAGTTGCAGTTGCATCATCTCAGGTGAAGATTCACTTTATTCATTACTTTTTTTCTTTTTCTTTTTCCTTTTTTGTTTTCCCCAAATAACTCTCTCTCTCTCTTTTGATCATGCGATCGAAATTAGCTTGAAATATTGTTTTAGCCCCTTCCTAAATTAAAGTTTTAGAAGTTTTATTTTATGGTCTCTGTTTACAACTCTTTGAATTTTAGGGATCACAACAATTTTTTATTTTATTTTTACTACAACAATCATGGGAAATGAGGGATCGAACCTCCAACCTCGAAAGAAAGAGTTAGGTGTCTTAATCGATGAACTAAACTCATGTCCGCGATCACAACAATATTTTAACTGTAAAAATACATAGACTATTTTGAGTTCAAATAGCCAAGTATGAGGATGATTTTGAATTATTTGAACTTGTTCTTGATTTACTATAGCTTCACAGAGTTGATCCTCGGTAAGTTAAATTGATCGTTTGCAATTTCACAAAACTGGTAATTACAAAAAGTGCTTTGATTCAGGAACTTGCTCATTTTCGGCGGAGTTGTTAGTTTGTCCAGTTTATTTCGAGTCGATTCCTGGCGGTCTTGGGGTTTTCTTGGTTCGTAATAGGAGGGTAAGGCGATGATGGAGAGAAGGTGTTGTTTCCCGTTTTCGAGATATAGGGATCGTGTTAAGGTAGGCTTGTTTTGGTTTTAGTTTTGCTATTTTGTGAGGTATTTGGATCGAGAGGAATAGTAAATATTTTTAGGATTGAGAGATCTTGGAAGGAAATTGGAGAGCTTGTTTAGATTTAATATCTCTATCGGTGTTGATTTCTAAGATTTTTTATATTATAATTAGGTGTCATTCTAGGACGATGTGATTCTCCCTTTTTTTTTTCTCTTGGCTATAGCTTAATTAAACTTGATTATCTTTCACATTACCCGTTTTAAGACACTTTCTTGTAGTGAAAAACACACAATTTTGACAAAGCTCGGCCCTTATAATGTTTGTTAAAATCACCCTCTCCACCAAGATATACTTGTAGCTGTCAAAGCGAGTATAGCTCAACGGTAATTGACATGCATAAATATCCAACTAATAGGTTGTGAGTTCAATTTCTCATTCCCACATGTTGCACTCTAAAAAAAGAAGCGACGACACACTTGTAGCTCTTTGCTTAATTATTTTAGGGTTTCTTTGCACAGCTTGAAAACAGTGTCCATGCCGAATTGGCTGAGGAATTTGCAACCAAGACCAATGAACTTAGGTAACATTTCTCACCATTATTATCAACTGCTAAAATCATATTATATAAGTATAGGAATAATTATGAATTGGAGCTTGTTTTATTGCCTAGTTACTTTTGTATAACATATCCCTATATATTTGTGAACTTGCAAATGACATCTTTTTTCGGTTATCTTTATAGAACTGATACACGAAGTTTATTCTATCACCTGTCTTCATATATATATATAACGAGATTCATATCGAAGTCCATATTCGATAACGCATAAGCTTCCAATAAAAAGTTAAAAAACCAAAATAAATATTTCATAATCGAAGTCCATTTGGGTAAAGGTAAATCCTTTTCAAGATTAATGGGATGAAAGAAACAATAAGAGTCGTGCCCAAGCGTAGGGATTGATAGGGAAGATTAATTAGAAATAGATCAATTCAATTGTTGACAGGCGTTTTTTAAACTCATTCATATTTGAATGCTCCGATCCCCGAATGTAATTAACTCGGGTTGTAAGTTTAGGGACCAAATTAAACTTCAATACGACACATTTCAACCAAAAGGGCTTTGACATGAATTGGAAATTAAGTTTTGGACAATAATTAATACTCATTTGTGTTAAACTATGAACAAGGCATATGAGGGGAGAGGAGCTTCAAGGATTGGGGATAGAAGAATTAAAGCAGCTGGAGAAATTGCTTGAGATTGGTTTGAGTCGTGTTGTAGAAACCAAGGTTTGTGCAATAAATGCTAAGATA

mRNA sequence

ATGACTCGGCAGAAAATAGAGATAAAGAAGATAGACAATATTGCTGCAAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGGCTATTCAAAAAGGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGACTACTCAACCTCAAGGTTTTTTTCTTCTTTTTTTTTTTTCTCTAGAAATATTACTCATTTTGAGCTCTACTTTCCATATTTAGATATGTTTTTTTGTTGGCTTGAAAACAGTGTCCATGCCGAATTGGCTGAGGAATTTGCAACCAAGACCAATGAACTTAGGCATATGAGGGGAGAGGAGCTTCAAGGATTGGGGATAGAAGAATTAAAGCAGCTGGAGAAATTGCTTGAGATTGGTTTGAGTCGTGTTGTAGAAACCAAGGTTTGTGCAATAAATGCTAAGATA

Coding sequence (CDS)

ATGACTCGGCAGAAAATAGAGATAAAGAAGATAGACAATATTGCTGCAAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGGCTATTCAAAAAGGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGACTACTCAACCTCAAGGTTTTTTTCTTCTTTTTTTTTTTTCTCTAGAAATATTACTCATTTTGAGCTCTACTTTCCATATTTAGATATGTTTTTTTGTTGGCTTGAAAACAGTGTCCATGCCGAATTGGCTGAGGAATTTGCAACCAAGACCAATGAACTTAGGCATATGAGGGGAGAGGAGCTTCAAGGATTGGGGATAGAAGAATTAAAGCAGCTGGAGAAATTGCTTGAGATTGGTTTGAGTCGTGTTGTAGAAACCAAGGTTTGTGCAATAAATGCTAAGATA

Protein sequence

MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTSRFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEELQGLGIEELKQLEKLLEIGLSRVVETKVCAINAKI

Homology

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BLAST of MS012339 vs. NCBI nr
Match: XP_022149232.1 (MADS-box protein JOINTLESS-like [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 1.9e-45
Identity = 113/143 (79.02%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS
Sbjct: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEELQGL 120
                       +     +   + +    L NSVHAELAEEFATKTNELRHMRGEELQGL
Sbjct: 61  S-TQELLRRQNMVPENNNFTQPVAVASSQLGNSVHAELAEEFATKTNELRHMRGEELQGL 120

Query: 121 GIEELKQLEKLLEIGLSRVVETK 144
           GIEELKQLEKLLEIGLSRVVETK
Sbjct: 121 GIEELKQLEKLLEIGLSRVVETK 142

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BLAST of MS012339 vs. NCBI nr
Match: XP_038905494.1 (MADS-box protein SVP-like isoform X2 [Benincasa hispida])

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-41
Identity = 104/146 (71.23%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           MTRQKI+IKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYS+S
Sbjct: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFF---CWLENSVHAELAEEFATKTNELRHMRGEEL 120
                       +       P L+ F      LE S + +L EEFA KT ELRHM+GEEL
Sbjct: 61  SML--------ELLRRHNMLPELNNFSQPPSQLEKSAYVKLTEEFAAKTKELRHMKGEEL 120

Query: 121 QGLGIEELKQLEKLLEIGLSRVVETK 144
           QGLGIEELKQLEKLLEIGL+RV+ETK
Sbjct: 121 QGLGIEELKQLEKLLEIGLNRVIETK 138

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BLAST of MS012339 vs. NCBI nr
Match: XP_038905492.1 (MADS-box protein SVP-like isoform X1 [Benincasa hispida])

HSP 1 Score: 179.5 bits (454), Expect = 2.2e-41
Identity = 104/146 (71.23%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           MTRQKI+IKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYS+S
Sbjct: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFF---CWLENSVHAELAEEFATKTNELRHMRGEEL 120
                       +       P L+ F      LE S + +L EEFA KT ELRHM+GEEL
Sbjct: 61  SML--------ELLRRHNMLPELNNFSQPPSQLEKSAYVKLTEEFAAKTKELRHMKGEEL 120

Query: 121 QGLGIEELKQLEKLLEIGLSRVVETK 144
           QGLGIEELKQLEKLLEIGL+RV+ETK
Sbjct: 121 QGLGIEELKQLEKLLEIGLNRVIETK 138

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BLAST of MS012339 vs. NCBI nr
Match: XP_011653451.1 (MADS-box protein JOINTLESS [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-40
Identity = 104/146 (71.23%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYS+S
Sbjct: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFF---CWLENSVHAELAEEFATKTNELRHMRGEEL 120
                      ++       P L+        LE S HA+L EEFA KT ELRHM+GEEL
Sbjct: 61  SML--------DLLRRHNMLPELNSISQPPSQLEKSAHAKLTEEFAAKTKELRHMKGEEL 120

Query: 121 QGLGIEELKQLEKLLEIGLSRVVETK 144
           Q LGIEELKQLEKLLE GL+RV+ETK
Sbjct: 121 QELGIEELKQLEKLLENGLNRVIETK 138

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BLAST of MS012339 vs. NCBI nr
Match: KAE8649388.1 (hypothetical protein Csa_011848 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-40
Identity = 104/146 (71.23%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYS+S
Sbjct: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFF---CWLENSVHAELAEEFATKTNELRHMRGEEL 120
                      ++       P L+        LE S HA+L EEFA KT ELRHM+GEEL
Sbjct: 61  SML--------DLLRRHNMLPELNSISQPPSQLEKSAHAKLTEEFAAKTKELRHMKGEEL 120

Query: 121 QGLGIEELKQLEKLLEIGLSRVVETK 144
           Q LGIEELKQLEKLLE GL+RV+ETK
Sbjct: 121 QELGIEELKQLEKLLENGLNRVIETK 138

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BLAST of MS012339 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-33
Identity = 85/146 (58.22%), Postives = 110/146 (75.34%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           M R+KI+IKKIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLFDYS+S
Sbjct: 1   MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

Query: 61  ---RFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEEL 120
              +        S+N+   +L  P L++    +ENS ++ L++E + K++ LR MRGEEL
Sbjct: 61  SMKQILERRDLHSKNLE--KLDQPSLELQL--VENSNYSRLSKEISEKSHRLRQMRGEEL 120

Query: 121 QGLGIEELKQLEKLLEIGLSRVVETK 144
           QGL IEEL+QLE+ LE GLSRV+E K
Sbjct: 121 QGLNIEELQQLERSLETGLSRVIERK 142

[Close]

BLAST of MS012339 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-33
Identity = 86/154 (55.84%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           M R+KI+I+KIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLF++ +S
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  ---RFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEEL 120
                       S+N+   +L  P L++    +ENS HA +++E A K++ LR MRGEEL
Sbjct: 61  SMKEVLERHNLQSKNLE--KLDQPSLELQL--VENSDHARMSKEIADKSHRLRQMRGEEL 120

Query: 121 QGLGIEELKQLEKLLEIGLSRVVETKVCAINAKI 152
           QGL IEEL+QLEK LE GL+RV+ETK   I ++I
Sbjct: 121 QGLDIEELQQLEKALETGLTRVIETKSDKIMSEI 150

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BLAST of MS012339 vs. ExPASy Swiss-Prot
Match: O82794 (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-30
Identity = 81/144 (56.25%), Postives = 104/144 (72.22%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           M R+KI IKKIDNI ARQVTFSKRRRG+FKKA EL+ LCDAD+ALI+FSA+GKLF++S+S
Sbjct: 1   MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61  RFFSSFFFFSRNITHF-ELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEELQG 120
           R       +S + ++  +L  P        LEN   + L++E   KT +LR +RGE+L G
Sbjct: 61  RMRDILGRYSLHASNINKLMDP--PSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDG 120

Query: 121 LGIEELKQLEKLLEIGLSRVVETK 144
           L +EEL++LEKLLE GLSRV E K
Sbjct: 121 LNLEELQRLEKLLESGLSRVSEKK 142

[Close]

BLAST of MS012339 vs. ExPASy Swiss-Prot
Match: Q9XJ66 (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS22 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.4e-28
Identity = 79/146 (54.11%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           M R++ EIK+I++ AARQVTFSKRRRGLFKKA EL+ LCDAD+ALIVFS++GKL  +++S
Sbjct: 1   MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS 60

Query: 61  ---RFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEEL 120
                   +   S N+   E   P LD+    LE+S +A L E+ A  +  LR MRGEEL
Sbjct: 61  SMNEIIDKYNTHSNNLGKAEQ--PSLDLN---LEHSKYAHLNEQLAEASLRLRQMRGEEL 120

Query: 121 QGLGIEELKQLEKLLEIGLSRVVETK 144
           +GL I+EL+QLEK LE GL RV+ TK
Sbjct: 121 EGLSIDELQQLEKNLEAGLHRVMLTK 141

[Close]

BLAST of MS012339 vs. ExPASy Swiss-Prot
Match: Q69TG5 (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS55 PE=2 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-25
Identity = 75/165 (45.45%), Postives = 104/165 (63.03%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           M R++ EI++I++ AARQVTFSKRRRGLFKKA ELA LCDAD+AL+VFS++GKL  +++S
Sbjct: 1   MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASS 60

Query: 61  ---RFFSSFFFFSRNITHFELYFPYLDMFF-------------------CWLENSVHAEL 120
                   +   S+N+   +   P +D+ F                     LE+S  + L
Sbjct: 61  NMNEIIDKYTTHSKNLGKTDKQ-PSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSL 120

Query: 121 AEEFATKTNELRHMRGEELQGLGIEELKQLEKLLEIGLSRVVETK 144
            E+ A  + +LR MRGEEL+GL +EEL+Q+EK LE GL RV+ TK
Sbjct: 121 NEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTK 164

[Close]

BLAST of MS012339 vs. ExPASy TrEMBL
Match: A0A6J1D7D5 (MADS-box protein JOINTLESS-like OS=Momordica charantia OX=3673 GN=LOC111017703 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 9.2e-46
Identity = 113/143 (79.02%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS
Sbjct: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEELQGL 120
                       +     +   + +    L NSVHAELAEEFATKTNELRHMRGEELQGL
Sbjct: 61  S-TQELLRRQNMVPENNNFTQPVAVASSQLGNSVHAELAEEFATKTNELRHMRGEELQGL 120

Query: 121 GIEELKQLEKLLEIGLSRVVETK 144
           GIEELKQLEKLLEIGLSRVVETK
Sbjct: 121 GIEELKQLEKLLEIGLSRVVETK 142

[Close]

BLAST of MS012339 vs. ExPASy TrEMBL
Match: A0A6J1HRP2 (MADS-box protein SVP-like OS=Cucurbita maxima OX=3661 GN=LOC111466104 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.5e-40
Identity = 101/147 (68.71%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           MTRQKI+IKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYS+S
Sbjct: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFF----CWLENSVHAELAEEFATKTNELRHMRGEE 120
                     + +       P ++ F       LE   +A+L+EEFA KT EL+HMRGE+
Sbjct: 61  SM--------QELLRRHNMIPEVNNFGQQPPSQLEKDAYAKLSEEFAAKTKELKHMRGED 120

Query: 121 LQGLGIEELKQLEKLLEIGLSRVVETK 144
           LQ LGIEELKQLEKLLEIGL+RV+ETK
Sbjct: 121 LQDLGIEELKQLEKLLEIGLNRVIETK 139

[Close]

BLAST of MS012339 vs. ExPASy TrEMBL
Match: A0A1S3BYS5 (MADS-box protein JOINTLESS-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494862 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.0e-40
Identity = 103/147 (70.07%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYS+S
Sbjct: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFF----CWLENSVHAELAEEFATKTNELRHMRGEE 120
                      ++       P L+         LE S HA+L EEFA KT ELRHM+GEE
Sbjct: 61  SML--------DLLRRHNMLPELNNISQLPPSQLEKSAHAKLTEEFAAKTKELRHMKGEE 120

Query: 121 LQGLGIEELKQLEKLLEIGLSRVVETK 144
           LQ LGIEELK+LEKLLE GL+RV+ETK
Sbjct: 121 LQELGIEELKELEKLLENGLNRVIETK 139

[Close]

BLAST of MS012339 vs. ExPASy TrEMBL
Match: A0A6J1E3I4 (MADS-box protein SVP-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430497 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.6e-40
Identity = 104/143 (72.73%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           MTRQKI+IKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYS+S
Sbjct: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEELQGL 120
              S      R+    E+   +    F  +E SV A L EEFA KT ELRHM+GEEL+ L
Sbjct: 61  ---SMHELLGRHNKLPEVN-NFCQPLFQQMEKSVCANLREEFAAKTKELRHMKGEELEEL 120

Query: 121 GIEELKQLEKLLEIGLSRVVETK 144
           GIEELKQLEKLLEIGL+RV+ETK
Sbjct: 121 GIEELKQLEKLLEIGLNRVIETK 139

[Close]

BLAST of MS012339 vs. ExPASy TrEMBL
Match: A0A6J1EDZ0 (MADS-box protein SVP-like OS=Cucurbita moschata OX=3662 GN=LOC111432358 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.6e-40
Identity = 100/147 (68.03%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           MTRQKI+IKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYS+S
Sbjct: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFF----CWLENSVHAELAEEFATKTNELRHMRGEE 120
                     + +       P ++ F       +E   +A+L+EEFA KT EL+HMRGE+
Sbjct: 61  SM--------QELLRRHNMIPEVNSFGQQPPSQVEKDAYAKLSEEFAAKTKELKHMRGED 120

Query: 121 LQGLGIEELKQLEKLLEIGLSRVVETK 144
           LQ LGIEELKQLEKLLEIGL+RV+ETK
Sbjct: 121 LQDLGIEELKQLEKLLEIGLNRVIETK 139

[Close]

BLAST of MS012339 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-34
Identity = 86/154 (55.84%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           M R+KI+I+KIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLF++ +S
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  ---RFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEEL 120
                       S+N+   +L  P L++    +ENS HA +++E A K++ LR MRGEEL
Sbjct: 61  SMKEVLERHNLQSKNLE--KLDQPSLELQL--VENSDHARMSKEIADKSHRLRQMRGEEL 120

Query: 121 QGLGIEELKQLEKLLEIGLSRVVETKVCAINAKI 152
           QGL IEEL+QLEK LE GL+RV+ETK   I ++I
Sbjct: 121 QGLDIEELQQLEKALETGLTRVIETKSDKIMSEI 150

[Close]

BLAST of MS012339 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-34
Identity = 86/151 (56.95%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           M R+KI+I+KIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLFD    
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFD--MK 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEELQGL 120
                    S+N+   +L  P L++    +ENS HA +++E A K++ LR MRGEELQGL
Sbjct: 61  EVLERHNLQSKNLE--KLDQPSLELQL--VENSDHARMSKEIADKSHRLRQMRGEELQGL 120

Query: 121 GIEELKQLEKLLEIGLSRVVETKVCAINAKI 152
            IEEL+QLEK LE GL+RV+ETK   I ++I
Sbjct: 121 DIEELQQLEKALETGLTRVIETKSDKIMSEI 145

[Close]

BLAST of MS012339 vs. TAIR 10
Match: AT4G24540.1 (AGAMOUS-like 24 )

HSP 1 Score: 134.0 bits (336), Expect = 9.8e-32
Identity = 81/144 (56.25%), Postives = 104/144 (72.22%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           M R+KI IKKIDNI ARQVTFSKRRRG+FKKA EL+ LCDAD+ALI+FSA+GKLF++S+S
Sbjct: 1   MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61  RFFSSFFFFSRNITHF-ELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEELQG 120
           R       +S + ++  +L  P        LEN   + L++E   KT +LR +RGE+L G
Sbjct: 61  RMRDILGRYSLHASNINKLMDP--PSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDG 120

Query: 121 LGIEELKQLEKLLEIGLSRVVETK 144
           L +EEL++LEKLLE GLSRV E K
Sbjct: 121 LNLEELQRLEKLLESGLSRVSEKK 142

[Close]

BLAST of MS012339 vs. TAIR 10
Match: AT4G09960.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 9.5e-19
Identity = 56/143 (39.16%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           M R KIEIK+I+N   RQVTF KRR GL KKA+EL+ LCDA++ALIVFS  G+L++Y+ +
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEELQGL 120
              S+   + +  +         ++   + +    A+L ++  T  N  R++ G+ L  L
Sbjct: 61  NIRSTIERYKKACSDSTNTSTVQEINAAYYQQE-SAKLRQQIQTIQNSNRNLMGDSLSSL 120

Query: 121 GIEELKQLEKLLEIGLSRVVETK 144
            ++ELKQ+E  LE  +SR+   K
Sbjct: 121 SVKELKQVENRLEKAISRIRSKK 142

[Close]

BLAST of MS012339 vs. TAIR 10
Match: AT4G09960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 90.9 bits (224), Expect = 9.5e-19
Identity = 56/143 (39.16%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60
           M R KIEIK+I+N   RQVTF KRR GL KKA+EL+ LCDA++ALIVFS  G+L++Y+ +
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61  RFFSSFFFFSRNITHFELYFPYLDMFFCWLENSVHAELAEEFATKTNELRHMRGEELQGL 120
              S+   + +  +         ++   + +    A+L ++  T  N  R++ G+ L  L
Sbjct: 61  NIRSTIERYKKACSDSTNTSTVQEINAAYYQQE-SAKLRQQIQTIQNSNRNLMGDSLSSL 120

Query: 121 GIEELKQLEKLLEIGLSRVVETK 144
            ++ELKQ+E  LE  +SR+   K
Sbjct: 121 SVKELKQVENRLEKAISRIRSKK 142

The following BLAST results are available for this feature:

BLAST of MS012339 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149232.1	1.9e-45	79.02	MADS-box protein JOINTLESS-like [Momordica charantia]	[more]
XP_038905494.1	2.2e-41	71.23	MADS-box protein SVP-like isoform X2 [Benincasa hispida]	[more]
XP_038905492.1	2.2e-41	71.23	MADS-box protein SVP-like isoform X1 [Benincasa hispida]	[more]
XP_011653451.1	1.1e-40	71.23	MADS-box protein JOINTLESS [Cucumis sativus]	[more]
KAE8649388.1	1.1e-40	71.23	hypothetical protein Csa_011848 [Cucumis sativus]	[more]

BLAST of MS012339 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FUY6	2.3e-33	58.22	MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1	[more]
Q9FVC1	2.3e-33	55.84	MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1	[more]
O82794	1.4e-30	56.25	MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1	[more]
Q9XJ66	8.4e-28	54.11	MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q69TG5	3.9e-25	45.45	MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of MS012339 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7D5	9.2e-46	79.02	MADS-box protein JOINTLESS-like OS=Momordica charantia OX=3673 GN=LOC111017703 P...	[more]
A0A6J1HRP2	1.5e-40	68.71	MADS-box protein SVP-like OS=Cucurbita maxima OX=3661 GN=LOC111466104 PE=4 SV=1	[more]
A0A1S3BYS5	2.0e-40	70.07	MADS-box protein JOINTLESS-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034948...	[more]
A0A6J1E3I4	2.6e-40	72.73	MADS-box protein SVP-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114304...	[more]
A0A6J1EDZ0	2.6e-40	68.03	MADS-box protein SVP-like OS=Cucurbita moschata OX=3662 GN=LOC111432358 PE=4 SV=...	[more]

BLAST of MS012339 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22540.1	1.6e-34	55.84	K-box region and MADS-box transcription factor family protein	[more]
AT2G22540.2	2.8e-34	56.95	K-box region and MADS-box transcription factor family protein	[more]
AT4G24540.1	9.8e-32	56.25	AGAMOUS-like 24	[more]
AT4G09960.2	9.5e-19	39.16	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.1	9.5e-19	39.16	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 67.72 coord: 38..59 score: 54.71 coord: 3..23 score: 58.33
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 9.9E-38 score: 141.3
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 2.4E-24 score: 84.6
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 28.651051
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 96..149 e-value: 7.3E-9 score: 35.7
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..67 e-value: 7.5E-23 score: 82.1
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..86
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..145
None	No IPR available	PANTHER	PTHR48019:SF6	MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1	coord: 1..145
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 3..59 e-value: 2.05113E-34 score: 113.416

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012339.1	MS012339.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding