MS012260 (gene) Bitter gourd (TR) v1

Overview
NameMS012260
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLAG1 longevity assurance homolog 2
Locationscaffold797: 939926 .. 940138 (+)
RNA-Seq ExpressionMS012260
SyntenyMS012260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCCGATATGGAGCCACAGTAGCGCGCCAGACGCTTTGCATTTCGTCATCGCCGTCCAGTTCGCCTTCGGCTTCTATGCCGCGCGGTTCTTACTCGACAGATTCATTTTTCGTGTGAGTTTTCTTTTCTTTCTTCTATCTGAAATTACATTTGCGTTCTGCTTTTCCGACGCTTCTTTACTGCAAATTTGTTCCTCTCTTGCTTCTCTTTGG

mRNA sequence

GACCCGATATGGAGCCACAGTAGCGCGCCAGACGCTTTGCATTTCGTCATCGCCGTCCAGTTCGCCTTCGGCTTCTATGCCGCGCGGTTCTTACTCGACAGATTCATTTTTCGTGTGAGTTTTCTTTTCTTTCTTCTATCTGAAATTACATTTGCGTTCTGCTTTTCCGACGCTTCTTTACTGCAAATTTGTTCCTCTCTTGCTTCTCTTTGG

Coding sequence (CDS)

GACCCGATATGGAGCCACAGTAGCGCGCCAGACGCTTTGCATTTCGTCATCGCCGTCCAGTTCGCCTTCGGCTTCTATGCCGCGCGGTTCTTACTCGACAGATTCATTTTTCGTGTGAGTTTTCTTTTCTTTCTTCTATCTGAAATTACATTTGCGTTCTGCTTTTCCGACGCTTCTTTACTGCAAATTTGTTCCTCTCTTGCTTCTCTTTGG

Protein sequence

DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASLLQICSSLASLW
Homology
BLAST of MS012260 vs. NCBI nr
Match: XP_022136346.1 (LAG1 longevity assurance homolog 2 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 5.5e-11
Identity = 45/71 (63.38%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 1  DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASL 60
          DPIWSHSS PDALHFVIAVQFAFGFYAARFLLDRFIFR  F  +LLS+        +A+ 
Sbjct: 2  DPIWSHSSVPDALHFVIAVQFAFGFYAARFLLDRFIFR-RFAIWLLSKGAAPLKLDEATQ 61

Query: 61 LQICSSLASLW 72
           +I     S+W
Sbjct: 62 SKIVKCSESMW 71

BLAST of MS012260 vs. NCBI nr
Match: KAG6588659.1 (LAG1 longevity assurance-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASL 60
          D IWSH+ APDALHFVIAVQFAFGFYAARFLLDRFIFR  F  +LLS+        +A+ 
Sbjct: 2  DSIWSHTGAPDALHFVIAVQFAFGFYAARFLLDRFIFR-RFAIWLLSKGAAPLKLDEATQ 61

Query: 61 LQICSSLASLW 72
           ++     S+W
Sbjct: 62 SKVVKCSESMW 71

BLAST of MS012260 vs. NCBI nr
Match: XP_022927943.1 (LAG1 longevity assurance homolog 2-like [Cucurbita moschata] >XP_023530121.1 LAG1 longevity assurance homolog 2-like [Cucurbita pepo subsp. pepo] >KAG7022446.1 LAG1 longevity assurance-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASL 60
          D IWSH+ APDALHFVIAVQFAFGFYAARFLLDRFIFR  F  +LLS+        +A+ 
Sbjct: 2  DSIWSHTGAPDALHFVIAVQFAFGFYAARFLLDRFIFR-RFAIWLLSKGAAPLKLDEATQ 61

Query: 61 LQICSSLASLW 72
           ++     S+W
Sbjct: 62 SKVVKCSESMW 71

BLAST of MS012260 vs. NCBI nr
Match: XP_023553869.1 (LAG1 longevity assurance homolog 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 6.7e-09
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASL 60
          D IWSH SAP+ALHFVIA+QFAFGF+AARFLLDRFIFR  F  +LLS+        +A+ 
Sbjct: 2  DSIWSHRSAPEALHFVIAIQFAFGFFAARFLLDRFIFR-RFAIWLLSKGAAPLKLDEATQ 61

Query: 61 LQICSSLASLW 72
           +I     S+W
Sbjct: 62 SKIVKCSESMW 71

BLAST of MS012260 vs. NCBI nr
Match: XP_022988873.1 (LAG1 longevity assurance homolog 2-like [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 6.7e-09
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1  DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASL 60
          D IWSH+ APDA HFVIAVQFAFGFYAARFLLDRFIFR  F  +LLS+        +A+ 
Sbjct: 2  DSIWSHTGAPDASHFVIAVQFAFGFYAARFLLDRFIFR-RFAIWLLSKGAAPLKLDEATQ 61

Query: 61 LQICSSLASLW 72
           ++     S+W
Sbjct: 62 SKVVKCSESMW 71

BLAST of MS012260 vs. ExPASy TrEMBL
Match: A0A6J1C397 (LAG1 longevity assurance homolog 2 OS=Momordica charantia OX=3673 GN=LOC111008054 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 45/71 (63.38%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 1  DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASL 60
          DPIWSHSS PDALHFVIAVQFAFGFYAARFLLDRFIFR  F  +LLS+        +A+ 
Sbjct: 2  DPIWSHSSVPDALHFVIAVQFAFGFYAARFLLDRFIFR-RFAIWLLSKGAAPLKLDEATQ 61

Query: 61 LQICSSLASLW 72
           +I     S+W
Sbjct: 62 SKIVKCSESMW 71

BLAST of MS012260 vs. ExPASy TrEMBL
Match: A0A6J1EMG2 (LAG1 longevity assurance homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111434695 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-10
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0

Query: 1  DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASL 60
          D IWSH+ APDALHFVIAVQFAFGFYAARFLLDRFIFR  F  +LLS+        +A+ 
Sbjct: 2  DSIWSHTGAPDALHFVIAVQFAFGFYAARFLLDRFIFR-RFAIWLLSKGAAPLKLDEATQ 61

Query: 61 LQICSSLASLW 72
           ++     S+W
Sbjct: 62 SKVVKCSESMW 71

BLAST of MS012260 vs. ExPASy TrEMBL
Match: A0A6J1JNK6 (LAG1 longevity assurance homolog 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486095 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.3e-09
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1  DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASL 60
          D IWSH+ APDA HFVIAVQFAFGFYAARFLLDRFIFR  F  +LLS+        +A+ 
Sbjct: 2  DSIWSHTGAPDASHFVIAVQFAFGFYAARFLLDRFIFR-RFAIWLLSKGAAPLKLDEATQ 61

Query: 61 LQICSSLASLW 72
           ++     S+W
Sbjct: 62 SKVVKCSESMW 71

BLAST of MS012260 vs. ExPASy TrEMBL
Match: A0A6J1GMN8 (LAG1 longevity assurance homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455365 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1  DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASL 60
          D IWSH SAP+ALHFVIA+QFAF F+AARFLLDRFIFR  F  +LLS+        +A+ 
Sbjct: 2  DSIWSHRSAPEALHFVIAIQFAFSFFAARFLLDRFIFR-RFAIWLLSKGAAPLKLDEATQ 61

Query: 61 LQICSSLASLW 72
           +I     S+W
Sbjct: 62 SKIVKCSESMW 71

BLAST of MS012260 vs. ExPASy TrEMBL
Match: A0A6J1I601 (LAG1 longevity assurance homolog 2-like OS=Cucurbita maxima OX=3661 GN=LOC111471005 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 1  DPIWSHSSAPDALHFVIAVQFAFGFYAARFLLDRFIFRVSFLFFLLSEITFAFCFSDASL 60
          D IWSH SAP+ALHFVIA+QFAF F+AARFLLDRFIFR  F  +LL++        +A+ 
Sbjct: 2  DSIWSHRSAPEALHFVIAIQFAFSFFAARFLLDRFIFR-RFAIWLLNKGAAPLKLDEATQ 61

Query: 61 LQICSSLASLW 72
           +I     S+W
Sbjct: 62 SKIVKCSESMW 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022136346.15.5e-1163.38LAG1 longevity assurance homolog 2 [Momordica charantia][more]
KAG6588659.11.4e-0959.15LAG1 longevity assurance-like 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022927943.11.4e-0959.15LAG1 longevity assurance homolog 2-like [Cucurbita moschata] >XP_023530121.1 LAG... [more]
XP_023553869.16.7e-0957.75LAG1 longevity assurance homolog 2-like [Cucurbita pepo subsp. pepo][more]
XP_022988873.16.7e-0957.75LAG1 longevity assurance homolog 2-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C3972.7e-1163.38LAG1 longevity assurance homolog 2 OS=Momordica charantia OX=3673 GN=LOC11100805... [more]
A0A6J1EMG26.6e-1059.15LAG1 longevity assurance homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1JNK63.3e-0957.75LAG1 longevity assurance homolog 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486... [more]
A0A6J1GMN81.6e-0856.34LAG1 longevity assurance homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1I6013.6e-0854.93LAG1 longevity assurance homolog 2-like OS=Cucurbita maxima OX=3661 GN=LOC111471... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012260.1MS012260.1mRNA