MS012245 (gene) Bitter gourd (TR) v1

Overview


Name	MS012245
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CBS domain-containing protein CBSX1, chloroplastic-like
Location	scaffold797: 781696 .. 783060 (-)
RNA-Seq Expression	MS012245
Synteny	MS012245

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCGATTTCCACGCCCTATGTTCCTCCCGCGCTTCTTCCTAATTCACGGCCGTTGCAGAGGCGTTTCCGATCCTCCGCCGCCTTTTCACCGTCATCGAATCGGTCTCCGTCCGTCGTTTCGGCACTTTCCGGCCACCGCATCGCCAATTCTGCGCCGGTACGCTACGCTGTCGATTAGAATCATATATCTATTTCCAATTTCATAAGTTTCGGGAAAACGCAAATTCTCTCTGTTTGTTTTGTTGTAATTTTGCAGCGATTTGATATTTGAGATTTGAAATGATTGGTTTGATATTGTTTTCAGTCAAGAAGTGGATCGTATACGGTTGGGGATTTCATGACGAAGAAGGGGAATCTGCAGGTCGTGAAGCCTTCTACGACCATCGACGAAGGTATCTAGGATTATGATTTAATTTATTGTATTTTCTGCTAGAATTTGGTCTTTTTTCTTGATTATAAGTCTGTGTTTAAACGAAACAGCATTGGAGGTTCTTGTAGAGAACAAATTATCTGGGTTCCCTGTAGTTGACGGCGACTGGAAACTGGTAATTTTACCCCTATTTCATTTTCTTTTAAATATAAGTTATTTCGAGAGTACAAGTTTTTTTTTTGTTTTTTTTGTTTTTTTGATAAAATACACTTTTAGTCCGATTTCTATTTGGTCTGTAAGTTTAAAAACTGGACAATTTGATCTCTAACCTTTAAAAAATGGTTCTAAAAGATCCATGAGTCCAACTTCTATTAGTATATTTAACATAAAATGACGTGGCAGTTAAATTGATGAGTGAACTTCATAATGCTTCAAACTACAACATTTGTTTTTTAAAGGTCGGGGACTAAACTGTTAGTTGTGAGCGATCGAACTCACAATTAAATATATGTCAATTACAACTAAACTATGCTCTATTTGACTATTAATTGATTATATTTGATGATACAGGTGGGTGTTGTTTCAGATTACGACTTGTTAGCTGTGGACTCCATTTCAGGTACATAAATATTTAATATTTCAATAAACTATAGTAGTGATTAATGAAAATGAAATAAATACAGAAATTAAAAAACTGAAATAATTATAGTTTAATATATATATTTTTTAGGTGTAGGTGGTGGGGACTGGGAGACTAATATATTTCCAGATGTCAACATTAGCTGGAAAGTAAGTCAGATTTTTTTTACTCTGATTTAACTTATATATTGTTAATAATTAGAATGATTTTTAAATTTGATTGAATATTGGCAGAGCTTCAAGGAGATACAGAAATTGGTAAGCAAGACCAACGGGGAAGTTATTGGAGATTTGATGACGCCTGCTCCATTGGTTGTTCGTGAAACCACAGACTTGGAAAATGCTGCCAGG

mRNA sequence

ATGGCCTCGATTTCCACGCCCTATGTTCCTCCCGCGCTTCTTCCTAATTCACGGCCGTTGCAGAGGCGTTTCCGATCCTCCGCCGCCTTTTCACCGTCATCGAATCGGTCTCCGTCCGTCGTTTCGGCACTTTCCGGCCACCGCATCGCCAATTCTGCGCCGTCAAGAAGTGGATCGTATACGGTTGGGGATTTCATGACGAAGAAGGGGAATCTGCAGGTCGTGAAGCCTTCTACGACCATCGACGAAGCATTGGAGGTTCTTGTAGAGAACAAATTATCTGGGTTCCCTGTAGTTGACGGCGACTGGAAACTGGTGGGTGTTGTTTCAGATTACGACTTGTTAGCTGTGGACTCCATTTCAGGTGTAGGTGGTGGGGACTGGGAGACTAATATATTTCCAGATGTCAACATTAGCTGGAAAAGCTTCAAGGAGATACAGAAATTGGTAAGCAAGACCAACGGGGAAGTTATTGGAGATTTGATGACGCCTGCTCCATTGGTTGTTCGTGAAACCACAGACTTGGAAAATGCTGCCAGG

Coding sequence (CDS)

ATGGCCTCGATTTCCACGCCCTATGTTCCTCCCGCGCTTCTTCCTAATTCACGGCCGTTGCAGAGGCGTTTCCGATCCTCCGCCGCCTTTTCACCGTCATCGAATCGGTCTCCGTCCGTCGTTTCGGCACTTTCCGGCCACCGCATCGCCAATTCTGCGCCGTCAAGAAGTGGATCGTATACGGTTGGGGATTTCATGACGAAGAAGGGGAATCTGCAGGTCGTGAAGCCTTCTACGACCATCGACGAAGCATTGGAGGTTCTTGTAGAGAACAAATTATCTGGGTTCCCTGTAGTTGACGGCGACTGGAAACTGGTGGGTGTTGTTTCAGATTACGACTTGTTAGCTGTGGACTCCATTTCAGGTGTAGGTGGTGGGGACTGGGAGACTAATATATTTCCAGATGTCAACATTAGCTGGAAAAGCTTCAAGGAGATACAGAAATTGGTAAGCAAGACCAACGGGGAAGTTATTGGAGATTTGATGACGCCTGCTCCATTGGTTGTTCGTGAAACCACAGACTTGGAAAATGCTGCCAGG

Protein sequence

MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR

Homology

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BLAST of MS012245 vs. NCBI nr
Match: XP_022155650.1 (CBS domain-containing protein CBSX1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 352.1 bits (902), Expect = 2.9e-93
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSY 60
           MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSY
Sbjct: 1   MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSY 60

Query: 61  TVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSI 120
           TVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSI
Sbjct: 61  TVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSI 120

Query: 121 SGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 180
           SGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
Sbjct: 121 SGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 180

[Close]

BLAST of MS012245 vs. NCBI nr
Match: XP_038888405.1 (CBS domain-containing protein CBSX1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 250.8 bits (639), Expect = 9.2e-63
Identity = 140/186 (75.27%), Postives = 156/186 (83.87%), Query Frame = 0


Query: 1   MASISTPYVPPALLPNSRPLQRRFRSSAA-----FSPSS-NRSPSVVSALSGHRIANSAP 60
           MASISTPYV P++LPNSR LQ +FR + A      SPSS  RSP+V  A SGHR+A+S+ 
Sbjct: 1   MASISTPYV-PSVLPNSRLLQTQFRLTYAGAGINSSPSSLFRSPAVALAFSGHRVASSSQ 60

Query: 61  SRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDL 120
            R GSYTVGDFMTKKGNLQV+KPST++DEALEVLVE  LSGFPVVD DWKLVGVVSDYDL
Sbjct: 61  FRIGSYTVGDFMTKKGNLQVLKPSTSVDEALEVLVEKSLSGFPVVDDDWKLVGVVSDYDL 120

Query: 121 LAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTD 180
           LA+DSISGV  GD E NIFPDVN SWKSFK IQKL+SK NGEV+GDLMTPAPLVVRET +
Sbjct: 121 LALDSISGV--GDVEANIFPDVNSSWKSFKLIQKLLSKKNGEVVGDLMTPAPLVVRETMN 180

[Close]

BLAST of MS012245 vs. NCBI nr
Match: XP_004136971.1 (CBS domain-containing protein CBSX2, chloroplastic [Cucumis sativus] >KGN43916.1 hypothetical protein Csa_017254 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-58
Identity = 128/180 (71.11%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSY 60
           MASISTPYV P++ PNSR    + R       +  RSP V  A SGHR+++S P R+GSY
Sbjct: 1   MASISTPYV-PSVFPNSRLPTTQLRH------AGYRSPVVALAFSGHRVSSSIPFRNGSY 60

Query: 61  TVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSI 120
            VGDFMTKKGNLQV+KPST+++EALEVLVE  LSGFPVVD DWKLVGVVSDYDLLA+DSI
Sbjct: 61  AVGDFMTKKGNLQVLKPSTSVEEALEVLVEKSLSGFPVVDDDWKLVGVVSDYDLLALDSI 120

Query: 121 SGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 180
           SGVGGGD   NIFPDVN SW+SFK IQKL+SK NGEV+GDLMTPAPLVV ET + ENAAR
Sbjct: 121 SGVGGGD-IINIFPDVNCSWESFKLIQKLLSKKNGEVVGDLMTPAPLVVSETMNFENAAR 172

[Close]

BLAST of MS012245 vs. NCBI nr
Match: TYK06762.1 (CBS domain-containing protein CBSX2 [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 4.0e-58
Identity = 132/184 (71.74%), Postives = 149/184 (80.98%), Query Frame = 0


Query: 1   MASISTPYVPPALLPNSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR- 60
           MASISTPYV P+   NSR    +FR +  F  SPSS  RSP +  A SGHR+A+S P R 
Sbjct: 1   MASISTPYV-PSFFSNSRLPTTQFRHAGTFDSSPSSLFRSPVLALAFSGHRVASSIPFRN 60

Query: 61  SGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLA 120
           +GSYTVGDFMTKKGNL V+KPST+I+EALEVLVE  +SGFPVVD DWKLVGVVSDYDLLA
Sbjct: 61  NGSYTVGDFMTKKGNLLVLKPSTSIEEALEVLVEKSVSGFPVVDDDWKLVGVVSDYDLLA 120

Query: 121 VDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLE 180
           +DSISGVGGGD   NIFPDVN SW+SFK IQKL+SK NGE++GDLMTPAPLVV ET + E
Sbjct: 121 LDSISGVGGGD-IINIFPDVNCSWESFKLIQKLLSKKNGEIVGDLMTPAPLVVSETMNFE 180

[Close]

BLAST of MS012245 vs. NCBI nr
Match: XP_008455519.1 (PREDICTED: CBS domain-containing protein CBSX2, chloroplastic [Cucumis melo])

HSP 1 Score: 220.7 bits (561), Expect = 1.0e-53
Identity = 122/169 (72.19%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 16  NSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR-SGSYTVGDFMTKKGN 75
           NSR    +FR +  F  SPSS  RSP +  A SGHR+A+S P R +GSYTVGDFMTKKGN
Sbjct: 23  NSRLPTTQFRHAGTFDSSPSSLFRSPVLALAFSGHRVASSIPFRNNGSYTVGDFMTKKGN 82

Query: 76  LQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETN 135
           L V+KPST+I+EALEVLVE  +SGFPVVD DWKLVGVVSDYDLLA+DSISGVGGGD   N
Sbjct: 83  LLVLKPSTSIEEALEVLVEKSVSGFPVVDDDWKLVGVVSDYDLLALDSISGVGGGD-IIN 142

Query: 136 IFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 181
           IFPDVN SW+SFK IQKL+SK NGE++GDLMTPAPLVV ET + ENAAR
Sbjct: 143 IFPDVNCSWESFKLIQKLLSKKNGEIVGDLMTPAPLVVSETMNFENAAR 190

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BLAST of MS012245 vs. ExPASy Swiss-Prot
Match: O23193 (CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSX1 PE=1 SV=2)

HSP 1 Score: 195.7 bits (496), Expect = 4.6e-49
Identity = 104/178 (58.43%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 5   STPYVPPALLPNSRPLQ--RRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTV 64
           S+P  P  LLP    +Q   +F  S +F PS +R PS  SA     + NS+  RSG YTV
Sbjct: 19  SSPSSPYLLLPRFLSVQPCHKFTFSRSF-PSKSRIPSASSAAGSTLMTNSSSPRSGVYTV 78

Query: 65  GDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSISG 124
           G+FMTKK +L VVKP+TT+DEALE+LVEN+++GFPV+D DWKLVG+VSDYDLLA+DSIS 
Sbjct: 79  GEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSIS- 138

Query: 125 VGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 181
            G G  E ++FP+V+ +WK+F  +QKL+SKTNG+++GDLMTPAPLVV E T+LE+AA+
Sbjct: 139 -GSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAK 193

[Close]

BLAST of MS012245 vs. ExPASy Swiss-Prot
Match: Q9C5D0 (CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSX2 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.1e-46
Identity = 98/162 (60.49%), Postives = 126/162 (77.78%), Query Frame = 0


Query: 19  PLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPS 78
           PL  R RSS  FSPS   S    +  S +   NS P+++G YTVGDFMT + NL VVKPS
Sbjct: 38  PLSNRRRSS-TFSPSITVSAFFAAPASVNN-NNSVPAKNGGYTVGDFMTPRQNLHVVKPS 97

Query: 79  TTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNI 138
           T++D+ALE+LVE K++G PV+D +W LVGVVSDYDLLA+DSISG    D  TN+FPDV+ 
Sbjct: 98  TSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQND--TNLFPDVDS 157

Query: 139 SWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 181
           +WK+F E+QKL+SKT G+V+GDLMTP+PLVVR++T+LE+AAR
Sbjct: 158 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAAR 195

[Close]

BLAST of MS012245 vs. ExPASy Swiss-Prot
Match: O67820 (Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=guaB PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.5e-04
Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 71  NLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDL 115
           N   VKP T + EAL+++ + K+SG PVVD + KL+G++++ DL
Sbjct: 99  NPVTVKPDTRVKEALDIMAKYKISGVPVVDEERKLIGILTNRDL 142

[Close]

BLAST of MS012245 vs. ExPASy TrEMBL
Match: A0A6J1DN09 (CBS domain-containing protein CBSX1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111022731 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSY 60
           MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSY
Sbjct: 1   MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSY 60

Query: 61  TVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSI 120
           TVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSI
Sbjct: 61  TVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSI 120

Query: 121 SGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 180
           SGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR
Sbjct: 121 SGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 180

[Close]

BLAST of MS012245 vs. ExPASy TrEMBL
Match: A0A0A0K7X9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073520 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 5.1e-59
Identity = 128/180 (71.11%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 1   MASISTPYVPPALLPNSRPLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSY 60
           MASISTPYV P++ PNSR    + R       +  RSP V  A SGHR+++S P R+GSY
Sbjct: 1   MASISTPYV-PSVFPNSRLPTTQLRH------AGYRSPVVALAFSGHRVSSSIPFRNGSY 60

Query: 61  TVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSI 120
            VGDFMTKKGNLQV+KPST+++EALEVLVE  LSGFPVVD DWKLVGVVSDYDLLA+DSI
Sbjct: 61  AVGDFMTKKGNLQVLKPSTSVEEALEVLVEKSLSGFPVVDDDWKLVGVVSDYDLLALDSI 120

Query: 121 SGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 180
           SGVGGGD   NIFPDVN SW+SFK IQKL+SK NGEV+GDLMTPAPLVV ET + ENAAR
Sbjct: 121 SGVGGGD-IINIFPDVNCSWESFKLIQKLLSKKNGEVVGDLMTPAPLVVSETMNFENAAR 172

[Close]

BLAST of MS012245 vs. ExPASy TrEMBL
Match: A0A5D3C646 (CBS domain-containing protein CBSX2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00630 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.9e-58
Identity = 132/184 (71.74%), Postives = 149/184 (80.98%), Query Frame = 0


Query: 1   MASISTPYVPPALLPNSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR- 60
           MASISTPYV P+   NSR    +FR +  F  SPSS  RSP +  A SGHR+A+S P R 
Sbjct: 1   MASISTPYV-PSFFSNSRLPTTQFRHAGTFDSSPSSLFRSPVLALAFSGHRVASSIPFRN 60

Query: 61  SGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLA 120
           +GSYTVGDFMTKKGNL V+KPST+I+EALEVLVE  +SGFPVVD DWKLVGVVSDYDLLA
Sbjct: 61  NGSYTVGDFMTKKGNLLVLKPSTSIEEALEVLVEKSVSGFPVVDDDWKLVGVVSDYDLLA 120

Query: 121 VDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLE 180
           +DSISGVGGGD   NIFPDVN SW+SFK IQKL+SK NGE++GDLMTPAPLVV ET + E
Sbjct: 121 LDSISGVGGGD-IINIFPDVNCSWESFKLIQKLLSKKNGEIVGDLMTPAPLVVSETMNFE 180

[Close]

BLAST of MS012245 vs. ExPASy TrEMBL
Match: A0A1S3C189 (CBS domain-containing protein CBSX2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495670 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.9e-54
Identity = 122/169 (72.19%), Postives = 138/169 (81.66%), Query Frame = 0


Query: 16  NSRPLQRRFRSSAAF--SPSS-NRSPSVVSALSGHRIANSAPSR-SGSYTVGDFMTKKGN 75
           NSR    +FR +  F  SPSS  RSP +  A SGHR+A+S P R +GSYTVGDFMTKKGN
Sbjct: 23  NSRLPTTQFRHAGTFDSSPSSLFRSPVLALAFSGHRVASSIPFRNNGSYTVGDFMTKKGN 82

Query: 76  LQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETN 135
           L V+KPST+I+EALEVLVE  +SGFPVVD DWKLVGVVSDYDLLA+DSISGVGGGD   N
Sbjct: 83  LLVLKPSTSIEEALEVLVEKSVSGFPVVDDDWKLVGVVSDYDLLALDSISGVGGGD-IIN 142

Query: 136 IFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 181
           IFPDVN SW+SFK IQKL+SK NGE++GDLMTPAPLVV ET + ENAAR
Sbjct: 143 IFPDVNCSWESFKLIQKLLSKKNGEIVGDLMTPAPLVVSETMNFENAAR 190

[Close]

BLAST of MS012245 vs. ExPASy TrEMBL
Match: A0A6J1EM78 (CBS domain-containing protein CBSX2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111434627 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.9e-53
Identity = 124/187 (66.31%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MASISTPYVPPALLPNSRPLQRRFRSSAAF-------SPSSNRSPSVVSALSGHRIANSA 60
           MASIST   P ++LPNSR   R+ +S A         SPSS   P  V      R   S 
Sbjct: 1   MASIST---PSSVLPNSRSF-RQTQSRAGLTGGGYISSPSSRFGPRTVGMAVSRRDVGS- 60

Query: 61  PSRSGSYTVGDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYD 120
              S +Y VGDFMTKKGNLQV+KPSTT+D+ALEVLVE  LSGFPV+D DWKLVGVVSDYD
Sbjct: 61  ---SAAYRVGDFMTKKGNLQVLKPSTTVDQALEVLVEKSLSGFPVIDDDWKLVGVVSDYD 120

Query: 121 LLAVDSISGVGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETT 180
           LLA+ +ISGVGGG  ETNIFPDVN SWK FKEIQKL+SKTNGEV+ DLMTPAPLVVRE T
Sbjct: 121 LLALHAISGVGGGGGETNIFPDVNSSWKRFKEIQKLLSKTNGEVVADLMTPAPLVVREAT 179

[Close]

BLAST of MS012245 vs. TAIR 10
Match: AT4G36910.1 (Cystathionine beta-synthase (CBS) family protein )

HSP 1 Score: 195.7 bits (496), Expect = 3.3e-50
Identity = 104/178 (58.43%), Postives = 136/178 (76.40%), Query Frame = 0


Query: 5   STPYVPPALLPNSRPLQ--RRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTV 64
           S+P  P  LLP    +Q   +F  S +F PS +R PS  SA     + NS+  RSG YTV
Sbjct: 19  SSPSSPYLLLPRFLSVQPCHKFTFSRSF-PSKSRIPSASSAAGSTLMTNSSSPRSGVYTV 78

Query: 65  GDFMTKKGNLQVVKPSTTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSISG 124
           G+FMTKK +L VVKP+TT+DEALE+LVEN+++GFPV+D DWKLVG+VSDYDLLA+DSIS 
Sbjct: 79  GEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSIS- 138

Query: 125 VGGGDWETNIFPDVNISWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 181
            G G  E ++FP+V+ +WK+F  +QKL+SKTNG+++GDLMTPAPLVV E T+LE+AA+
Sbjct: 139 -GSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAK 193

[Close]

BLAST of MS012245 vs. TAIR 10
Match: AT4G34120.1 (Cystathionine beta-synthase (CBS) family protein )

HSP 1 Score: 184.9 bits (468), Expect = 5.8e-47
Identity = 98/162 (60.49%), Postives = 126/162 (77.78%), Query Frame = 0


Query: 19  PLQRRFRSSAAFSPSSNRSPSVVSALSGHRIANSAPSRSGSYTVGDFMTKKGNLQVVKPS 78
           PL  R RSS  FSPS   S    +  S +   NS P+++G YTVGDFMT + NL VVKPS
Sbjct: 38  PLSNRRRSS-TFSPSITVSAFFAAPASVNN-NNSVPAKNGGYTVGDFMTPRQNLHVVKPS 97

Query: 79  TTIDEALEVLVENKLSGFPVVDGDWKLVGVVSDYDLLAVDSISGVGGGDWETNIFPDVNI 138
           T++D+ALE+LVE K++G PV+D +W LVGVVSDYDLLA+DSISG    D  TN+FPDV+ 
Sbjct: 98  TSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQND--TNLFPDVDS 157

Query: 139 SWKSFKEIQKLVSKTNGEVIGDLMTPAPLVVRETTDLENAAR 181
           +WK+F E+QKL+SKT G+V+GDLMTP+PLVVR++T+LE+AAR
Sbjct: 158 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAAR 195

The following BLAST results are available for this feature:

BLAST of MS012245 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155650.1	2.9e-93	100.00	CBS domain-containing protein CBSX1, chloroplastic-like [Momordica charantia]	[more]
XP_038888405.1	9.2e-63	75.27	CBS domain-containing protein CBSX1, chloroplastic-like [Benincasa hispida]	[more]
XP_004136971.1	1.1e-58	71.11	CBS domain-containing protein CBSX2, chloroplastic [Cucumis sativus] >KGN43916.1...	[more]
TYK06762.1	4.0e-58	71.74	CBS domain-containing protein CBSX2 [Cucumis melo var. makuwa]	[more]
XP_008455519.1	1.0e-53	72.19	PREDICTED: CBS domain-containing protein CBSX2, chloroplastic [Cucumis melo]	[more]

BLAST of MS012245 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23193	4.6e-49	58.43	CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
Q9C5D0	8.1e-46	60.49	CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
O67820	4.5e-04	45.45	Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) OX=22432...	[more]

BLAST of MS012245 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN09	1.4e-93	100.00	CBS domain-containing protein CBSX1, chloroplastic-like OS=Momordica charantia O...	[more]
A0A0A0K7X9	5.1e-59	71.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073520 PE=4 SV=1	[more]
A0A5D3C646	1.9e-58	71.74	CBS domain-containing protein CBSX2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3C189	4.9e-54	72.19	CBS domain-containing protein CBSX2, chloroplastic OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1EM78	1.9e-53	66.31	CBS domain-containing protein CBSX2, chloroplastic OS=Cucurbita moschata OX=3662...	[more]

BLAST of MS012245 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36910.1	3.3e-50	58.43	Cystathionine beta-synthase (CBS) family protein	[more]
AT4G34120.1	5.8e-47	60.49	Cystathionine beta-synthase (CBS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000644	CBS domain	SMART	SM00116	cbs_1	coord: 71..119 e-value: 9.8E-9 score: 45.0
IPR000644	CBS domain	PFAM	PF00571	CBS	coord: 62..117 e-value: 5.1E-13 score: 49.2
IPR000644	CBS domain	PROSITE	PS51371	CBS	coord: 66..125 score: 13.070426
None	No IPR available	GENE3D	3.10.580.10		coord: 57..180 e-value: 1.5E-42 score: 146.9
None	No IPR available	PANTHER	PTHR48108	CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC	coord: 6..180
None	No IPR available	PANTHER	PTHR48108:SF15	BNAA03G50880D PROTEIN	coord: 6..180
None	No IPR available	SUPERFAMILY	54631	CBS-domain pair	coord: 55..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012245.1	MS012245.1	mRNA