MS012240 (gene) Bitter gourd (TR) v1

Overview
NameMS012240
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein ACCELERATED CELL DEATH 6-like
Locationscaffold797: 748718 .. 748888 (-)
RNA-Seq ExpressionMS012240
SyntenyMS012240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCCAACTTATGCTCCATCGTCGTCGTGGTCCTAATCTCCACCATCGTGTTCGTCGCCGCCTACACCGTCCCTGGCGGCTTCAAGAGCAAGATTGGCTCCTCACAATCGATCTACATGGTGTTCACGGTGATGGACATTGTGCCGGTGGCCACGCCAATGGAGTCGGTG

mRNA sequence

TCCTCCAACTTATGCTCCATCGTCGTCGTGGTCCTAATCTCCACCATCGTGTTCGTCGCCGCCTACACCGTCCCTGGCGGCTTCAAGAGCAAGATTGGCTCCTCACAATCGATCTACATGGTGTTCACGGTGATGGACATTGTGCCGGTGGCCACGCCAATGGAGTCGGTG

Coding sequence (CDS)

TCCTCCAACTTATGCTCCATCGTCGTCGTGGTCCTAATCTCCACCATCGTGTTCGTCGCCGCCTACACCGTCCCTGGCGGCTTCAAGAGCAAGATTGGCTCCTCACAATCGATCTACATGGTGTTCACGGTGATGGACATTGTGCCGGTGGCCACGCCAATGGAGTCGGTG

Protein sequence

SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGSSQSIYMVFTVMDIVPVATPMESV
Homology
BLAST of MS012240 vs. NCBI nr
Match: XP_008459132.1 (PREDICTED: protein ACCELERATED CELL DEATH 6-like [Cucumis melo] >KAA0043147.1 protein ACCELERATED CELL DEATH 6-like [Cucumis melo var. makuwa] >TYK12318.1 protein ACCELERATED CELL DEATH 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1   SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGS----SQSIYMVFTVMDIVPVATPMES 58
           +S  CS VV VL++T+VF AAYTVPGG  +K GS    ++ IY+VFTVMDI+ +AT + S
Sbjct: 153 TSESCS-VVAVLVATVVFAAAYTVPGGLNTKTGSPVLLTEPIYIVFTVMDIIALATALTS 212

BLAST of MS012240 vs. NCBI nr
Match: KAE8653649.1 (hypothetical protein Csa_006883 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 4.7e-05
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1   SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGS----SQSIYMVFTVMDIVPVATPMES 58
           +S  CS  V VL++T+VF AAYTVPGG  SK GS    ++ IY+VFTVMDI+ +AT + S
Sbjct: 208 TSESCS-AVAVLVATVVFAAAYTVPGGLNSKTGSPILLTEPIYVVFTVMDILALATALSS 267

BLAST of MS012240 vs. NCBI nr
Match: XP_022974704.1 (uncharacterized protein LOC111473443 [Cucurbita maxima])

HSP 1 Score: 57.4 bits (137), Expect = 4.7e-05
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1   SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGS----SQSIYMVFTVMDIVPVATPMES 58
           +S  CS  V VLIST+VF AAYTVPGG  SK GS    ++ IY+VFT+MDI+ +AT + S
Sbjct: 505 TSESCS-AVAVLISTVVFAAAYTVPGGLNSKTGSPVLLTEPIYIVFTIMDIIGLATALTS 564

BLAST of MS012240 vs. NCBI nr
Match: XP_031739511.1 (uncharacterized protein LOC101203890 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 4.7e-05
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1   SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGS----SQSIYMVFTVMDIVPVATPMES 58
           +S  CS  V VL++T+VF AAYTVPGG  SK GS    ++ IY+VFTVMDI+ +AT + S
Sbjct: 517 TSESCS-AVAVLVATVVFAAAYTVPGGLNSKTGSPILLTEPIYVVFTVMDILALATALSS 576

BLAST of MS012240 vs. NCBI nr
Match: XP_022975228.1 (uncharacterized protein LOC111474320 [Cucurbita maxima])

HSP 1 Score: 57.4 bits (137), Expect = 4.7e-05
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1   SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGS----SQSIYMVFTVMDIVPVATPMES 58
           +S  CS  V VLIST+VF AAYTVPGG  SK GS    ++ IY+VFT+MDI+ +AT + S
Sbjct: 505 TSESCS-AVAVLISTVVFAAAYTVPGGLNSKTGSPVLLTEPIYIVFTIMDIIGLATALTS 564

BLAST of MS012240 vs. ExPASy TrEMBL
Match: A0A5A7TMX3 (Protein ACCELERATED CELL DEATH 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00880 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-05
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1   SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGS----SQSIYMVFTVMDIVPVATPMES 58
           +S  CS VV VL++T+VF AAYTVPGG  +K GS    ++ IY+VFTVMDI+ +AT + S
Sbjct: 153 TSESCS-VVAVLVATVVFAAAYTVPGGLNTKTGSPVLLTEPIYIVFTVMDIIALATALTS 212

BLAST of MS012240 vs. ExPASy TrEMBL
Match: A0A1S3C9K3 (protein ACCELERATED CELL DEATH 6-like OS=Cucumis melo OX=3656 GN=LOC103498332 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-05
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1   SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGS----SQSIYMVFTVMDIVPVATPMES 58
           +S  CS VV VL++T+VF AAYTVPGG  +K GS    ++ IY+VFTVMDI+ +AT + S
Sbjct: 153 TSESCS-VVAVLVATVVFAAAYTVPGGLNTKTGSPVLLTEPIYIVFTVMDIIALATALTS 212

BLAST of MS012240 vs. ExPASy TrEMBL
Match: A0A6J1IIM4 (uncharacterized protein LOC111474320 OS=Cucurbita maxima OX=3661 GN=LOC111474320 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1   SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGS----SQSIYMVFTVMDIVPVATPMES 58
           +S  CS  V VLIST+VF AAYTVPGG  SK GS    ++ IY+VFT+MDI+ +AT + S
Sbjct: 505 TSESCS-AVAVLISTVVFAAAYTVPGGLNSKTGSPVLLTEPIYIVFTIMDIIGLATALTS 564

BLAST of MS012240 vs. ExPASy TrEMBL
Match: A0A6J1IIE1 (uncharacterized protein LOC111473443 OS=Cucurbita maxima OX=3661 GN=LOC111473443 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1   SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGS----SQSIYMVFTVMDIVPVATPMES 58
           +S  CS  V VLIST+VF AAYTVPGG  SK GS    ++ IY+VFT+MDI+ +AT + S
Sbjct: 505 TSESCS-AVAVLISTVVFAAAYTVPGGLNSKTGSPVLLTEPIYIVFTIMDIIGLATALTS 564

BLAST of MS012240 vs. ExPASy TrEMBL
Match: A0A6J1FII8 (uncharacterized protein LOC111446049 OS=Cucurbita moschata OX=3662 GN=LOC111446049 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.7e-05
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1   SSNLCSIVVVVLISTIVFVAAYTVPGGFKSKIGS----SQSIYMVFTVMDIVPVATPMES 58
           +S  CS  V VLIST+VF AAYTVPGG  S  GS    ++ IY+VFT+MDI+ +AT + S
Sbjct: 505 TSESCS-AVAVLISTVVFAAAYTVPGGLNSNTGSPVLLTEPIYIVFTIMDIIGLATALTS 564

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008459132.12.8e-0555.74PREDICTED: protein ACCELERATED CELL DEATH 6-like [Cucumis melo] >KAA0043147.1 pr... [more]
KAE8653649.14.7e-0555.74hypothetical protein Csa_006883 [Cucumis sativus][more]
XP_022974704.14.7e-0555.74uncharacterized protein LOC111473443 [Cucurbita maxima][more]
XP_031739511.14.7e-0555.74uncharacterized protein LOC101203890 [Cucumis sativus][more]
XP_022975228.14.7e-0555.74uncharacterized protein LOC111474320 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TMX31.3e-0555.74Protein ACCELERATED CELL DEATH 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3C9K31.3e-0555.74protein ACCELERATED CELL DEATH 6-like OS=Cucumis melo OX=3656 GN=LOC103498332 PE... [more]
A0A6J1IIM42.3e-0555.74uncharacterized protein LOC111474320 OS=Cucurbita maxima OX=3661 GN=LOC111474320... [more]
A0A6J1IIE12.3e-0555.74uncharacterized protein LOC111473443 OS=Cucurbita maxima OX=3661 GN=LOC111473443... [more]
A0A6J1FII88.7e-0554.10uncharacterized protein LOC111446049 OS=Cucurbita moschata OX=3662 GN=LOC1114460... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 7..48
e-value: 1.2E-6
score: 28.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012240.1MS012240.1mRNA