MS012237 (gene) Bitter gourd (TR) v1

Overview


Name	MS012237
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold797: 707793 .. 707928 (-)
RNA-Seq Expression	MS012237
Synteny	MS012237

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCGCCCTTGGGGCTTTCTATTTAATTGTATCGAAAGACCCAATGAATTGGAATTTCCCTATTGAGCTAGGTATTTATGATGAAGATGATGAGTTTCAAGAGAATGATTCAGAGTTCTTGCAGAGTAAAACAGTG

mRNA sequence

TGGCGCCCTTGGGGCTTTCTATTTAATTGTATCGAAAGACCCAATGAATTGGAATTTCCCTATGAGCTAGGTATTTATGATGAAGATGATGAGTTTCAAGAGAATGATTCAGAGTTCTTGCAGAGTAAAACAGTG

Coding sequence (CDS)

TGGCGCCCTTGGGGCTTTCTATTTAATTGTATCGAAAGACCCAATGAATTGGAATTTCCCTATGAGCTAGGTATTTATGATGAAGATGATGAGTTTCAAGAGAATGATTCAGAGTTCTTGCAGAGTAAAACAGTG

Protein sequence

WRPWGFLFNCIERPNELEFPYELGIYDEDDEFQENDSEFLQSKTV

Homology

[Close]

BLAST of MS012237 vs. NCBI nr
Match: YP_010143466.1 (Ycf2 [Peganum harmala] >YP_010143486.1 Ycf2 [Peganum harmala] >QQL04673.1 Ycf2 [Peganum harmala] >QQL04693.1 Ycf2 [Peganum harmala])

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 2095 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 2146

[Close]

BLAST of MS012237 vs. NCBI nr
Match: QXU76199.1 (Ycf2 [Biebersteinia heterostemon] >QXU76221.1 Ycf2 [Biebersteinia heterostemon])

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 1398 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 1449

[Close]

BLAST of MS012237 vs. NCBI nr
Match: YP_009262354.1 (hypothetical chloroplast RF2 [Spondias tuberosa] >ANI86805.1 hypothetical chloroplast RF2 [Spondias tuberosa])

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 2101 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 2152

[Close]

BLAST of MS012237 vs. NCBI nr
Match: QJX65551.1 (hypothetical protein RF2 [Cipadessa cinerascens] >QJX65552.1 hypothetical protein RF2 [Cipadessa cinerascens])

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 2092 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 2143

[Close]

BLAST of MS012237 vs. NCBI nr
Match: QZH43672.1 (Ycf2 [Clausena anisum-olens] >QZH43690.1 Ycf2 [Clausena anisum-olens])

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 2093 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 2144

[Close]

BLAST of MS012237 vs. ExPASy Swiss-Prot
Match: Q09MB4 (Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-14
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 2083 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 2134

[Close]

BLAST of MS012237 vs. ExPASy Swiss-Prot
Match: B2LMN7 (Protein Ycf2 OS=Guizotia abyssinica OX=4230 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-13
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPY-------ELGIYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY       +  IYDE+DE QENDSEFLQS TV
Sbjct: 2061 WRPWGFLFDCIERPNELGFPYWSRSFRGKRIIYDEEDELQENDSEFLQSGTV 2112

[Close]

BLAST of MS012237 vs. ExPASy Swiss-Prot
Match: Q3C1N4 (Protein Ycf2 OS=Nicotiana sylvestris OX=4096 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.0e-13
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPY-------ELGIYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY       +  IYDE+DE QENDSEFLQS T+
Sbjct: 2081 WRPWGFLFDCIERPNELGFPYWSRSFRGKRIIYDEEDELQENDSEFLQSGTM 2132

[Close]

BLAST of MS012237 vs. ExPASy Swiss-Prot
Match: Q33BV3 (Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.0e-13
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPY-------ELGIYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY       +  IYDE+DE QENDSEFLQS T+
Sbjct: 2081 WRPWGFLFDCIERPNELGFPYWSRSFRGKRIIYDEEDELQENDSEFLQSGTM 2132

[Close]

BLAST of MS012237 vs. ExPASy Swiss-Prot
Match: P09976 (Protein Ycf2 OS=Nicotiana tabacum OX=4097 GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 3.0e-13
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPY-------ELGIYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY       +  IYDE+DE QENDSEFLQS T+
Sbjct: 2081 WRPWGFLFDCIERPNELGFPYWSRSFRGKRIIYDEEDELQENDSEFLQSGTM 2132

[Close]

BLAST of MS012237 vs. ExPASy TrEMBL
Match: A0A7L9CVW6 (Protein Ycf2 OS=Citrus hongheensis OX=496653 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 2083 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 2134

[Close]

BLAST of MS012237 vs. ExPASy TrEMBL
Match: A0A159BNP4 (Protein Ycf2 OS=Citrus platymamma OX=237571 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 2083 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 2134

[Close]

BLAST of MS012237 vs. ExPASy TrEMBL
Match: A0A7G9IWI4 (Protein Ycf2 OS=Citrus sunki OX=237574 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 2087 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 2138

[Close]

BLAST of MS012237 vs. ExPASy TrEMBL
Match: A0A1L2JIZ1 (Protein Ycf2 OS=Murraya koenigii OX=159030 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 2089 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 2140

[Close]

BLAST of MS012237 vs. ExPASy TrEMBL
Match: A0A6M8AWG8 (Protein Ycf2 OS=Aglaia odorata OX=210347 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 37/52 (71.15%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRPWGFLF+CIERPNEL FPY  G       IYDE DE QENDSEFLQS+T+
Sbjct: 2092 WRPWGFLFDCIERPNELGFPYRAGSFRGKRIIYDEKDELQENDSEFLQSRTM 2143

[Close]

BLAST of MS012237 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-12
Identity = 35/52 (67.31%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRP GFLF+CIERPNEL FPY  G       IYDE  E QENDSEFLQS T+
Sbjct: 2095 WRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTM 2146

[Close]

BLAST of MS012237 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-12
Identity = 35/52 (67.31%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 1    WRPWGFLFNCIERPNELEFPYELG-------IYDEDDEFQENDSEFLQSKTV 46
            WRP GFLF+CIERPNEL FPY  G       IYDE  E QENDSEFLQS T+
Sbjct: 2095 WRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDEKYELQENDSEFLQSGTM 2146

The following BLAST results are available for this feature:

BLAST of MS012237 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010143466.1	1.2e-11	71.15	Ycf2 [Peganum harmala] >YP_010143486.1 Ycf2 [Peganum harmala] >QQL04673.1 Ycf2 [...	[more]
QXU76199.1	1.2e-11	71.15	Ycf2 [Biebersteinia heterostemon] >QXU76221.1 Ycf2 [Biebersteinia heterostemon]	[more]
YP_009262354.1	1.2e-11	71.15	hypothetical chloroplast RF2 [Spondias tuberosa] >ANI86805.1 hypothetical chloro...	[more]
QJX65551.1	1.2e-11	71.15	hypothetical protein RF2 [Cipadessa cinerascens] >QJX65552.1 hypothetical protei...	[more]
QZH43672.1	1.2e-11	71.15	Ycf2 [Clausena anisum-olens] >QZH43690.1 Ycf2 [Clausena anisum-olens]	[more]

BLAST of MS012237 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09MB4	1.6e-14	71.15	Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1	[more]
B2LMN7	1.3e-13	71.15	Protein Ycf2 OS=Guizotia abyssinica OX=4230 GN=ycf2-A PE=3 SV=1	[more]
Q3C1N4	3.0e-13	69.23	Protein Ycf2 OS=Nicotiana sylvestris OX=4096 GN=ycf2-A PE=3 SV=1	[more]
Q33BV3	3.0e-13	69.23	Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1	[more]
P09976	3.0e-13	69.23	Protein Ycf2 OS=Nicotiana tabacum OX=4097 GN=ycf2-A PE=3 SV=2	[more]

BLAST of MS012237 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7L9CVW6	5.8e-12	71.15	Protein Ycf2 OS=Citrus hongheensis OX=496653 GN=ycf2 PE=3 SV=1	[more]
A0A159BNP4	5.8e-12	71.15	Protein Ycf2 OS=Citrus platymamma OX=237571 GN=ycf2 PE=3 SV=1	[more]
A0A7G9IWI4	5.8e-12	71.15	Protein Ycf2 OS=Citrus sunki OX=237574 GN=ycf2 PE=3 SV=1	[more]
A0A1L2JIZ1	5.8e-12	71.15	Protein Ycf2 OS=Murraya koenigii OX=159030 GN=ycf2 PE=3 SV=1	[more]
A0A6M8AWG8	5.8e-12	71.15	Protein Ycf2 OS=Aglaia odorata OX=210347 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS012237 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.5e-12	67.31	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.5e-12	67.31	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078:SF55	PROTEIN YCF2	coord: 1..44
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012237.1	MS012237.1	mRNA