MS012234 (gene) Bitter gourd (TR) v1

Overview


Name	MS012234
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Leucine-rich repeat extensin-like protein 3
Location	scaffold797: 686848 .. 687587 (-)
RNA-Seq Expression	MS012234
Synteny	MS012234

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACATATGCCATTCAGGGTCAGCCTCTTGAAGTCACCGGTATACAATTTTTCCTCTCCCTCCAAAATAATCTGTCTCTTTAGTTCTGTTTTGACATTGGTTGTGCTTCTCAAATATTTCTCCAAAAAAAAGAGGAAAAGTAAGAAGTTGATTTCGCCTCTGGATATGGTTTTTGTTGTTTTGGGTCAGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCCTACGTGTTACTTGAATATGGTAGCACAAAGTTCCGCACGACCACCTGCACAGGTTTGATTCTGGATGTTCCTTGTTCTGTTTTTGTCTTGTTGGTTTTGTAATTTGTTCAGATCTGAGAAGATGATCTTAAACTGAATGTGGATTTGATTGACAATGTATAGATGGTGGCAGAAATCCCACATTCCAAGAGAAATTTGTGTTCTCTCTGATTGAAGGGCTAAGAGAGATTAATGTTGCAGTTTGGAACAGCAATACAGTTACTTATGATGATTTCATTGGCAATGGAAAGTAAGATTCAGGTCCTCTCTTCCTCTTTGGTTTTTGATGTGTGGCTGGTCAATCTTAGCATCTGTTTAGCTAACCTTTTGTCAAGATTTTCCATATGTGGTACTGAGTTTTGAAATTTCTGTTCTGTAGAATCCAATTGGCAAAAGTTCTATCAGAAGGATATGATGACAGTGCATGGTCACTTCAAACTAAAACTGGCAGGTAT

mRNA sequence

ATGTCGACATATGCCATTCAGGGTCAGCCTCTTGAAGTCACCGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCCTACGTGTTACTTGAATATGGTAGCACAAAGTTCCGCACGACCACCTGCACAGATGGTGGCAGAAATCCCACATTCCAAGAGAAATTTGTGTTCTCTCTGATTGAAGGGCTAAGAGAGATTAATGTTGCAGTTTGGAACAGCAATACAGTTACTTATGATGATTTCATTGGCAATGGAAAAATCCAATTGGCAAAAGTTCTATCAGAAGGATATGATGACAGTGCATGGTCACTTCAAACTAAAACTGGCAGGTAT

Coding sequence (CDS)

ATGTCGACATATGCCATTCAGGGTCAGCCTCTTGAAGTCACCGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCCTACGTGTTACTTGAATATGGTAGCACAAAGTTCCGCACGACCACCTGCACAGATGGTGGCAGAAATCCCACATTCCAAGAGAAATTTGTGTTCTCTCTGATTGAAGGGCTAAGAGAGATTAATGTTGCAGTTTGGAACAGCAATACAGTTACTTATGATGATTTCATTGGCAATGGAAAAATCCAATTGGCAAAAGTTCTATCAGAAGGATATGATGACAGTGCATGGTCACTTCAAACTAAAACTGGCAGGTAT

Protein sequence

MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY

Homology

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BLAST of MS012234 vs. NCBI nr
Match: XP_022147782.1 (protein SRC2 homolog [Momordica charantia] >XP_022147784.1 protein SRC2 homolog [Momordica charantia])

HSP 1 Score: 246.5 bits (628), Expect = 1.1e-61
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60
           MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK
Sbjct: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60

Query: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGR+
Sbjct: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRH 117

[Close]

BLAST of MS012234 vs. NCBI nr
Match: XP_011658892.1 (leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >XP_031744405.1 leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN43902.1 hypothetical protein Csa_017078 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 1.4e-59
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60
           MST+AIQGQPLEVTVIGCTKLKDTEWISRQDPYV LEYGSTKFRTTTCTDGGRNPTFQEK
Sbjct: 1   MSTFAIQGQPLEVTVIGCTKLKDTEWISRQDPYVFLEYGSTKFRTTTCTDGGRNPTFQEK 60

Query: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           FVFSLIEGLREINV VWNSNTVTYDDFIGNGKIQLAKVL+EGYDDS+WSLQTKTGR+
Sbjct: 61  FVFSLIEGLREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRH 117

[Close]

BLAST of MS012234 vs. NCBI nr
Match: XP_038888782.1 (protein SRC2 homolog [Benincasa hispida] >XP_038888783.1 protein SRC2 homolog [Benincasa hispida] >XP_038888784.1 protein SRC2 homolog [Benincasa hispida])

HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59
Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60
           MSTY IQGQPLEVTVIGCTKLKDTEWISRQDPYV LEYGSTKFRTTTCTDGGRNPTFQEK
Sbjct: 1   MSTYTIQGQPLEVTVIGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQEK 60

Query: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           FVFSLIEGLREINV VWNSNTVTYDDFIGNGKIQLAKVL+EGYDDS+WSLQTKTGR+
Sbjct: 61  FVFSLIEGLREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRH 117

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BLAST of MS012234 vs. NCBI nr
Match: XP_008454977.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo] >XP_008454978.1 PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo] >XP_016901753.1 PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo] >KAA0031324.1 leucine-rich repeat extensin-like protein 3 [Cucumis melo var. makuwa] >TYK06775.1 leucine-rich repeat extensin-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60
           MSTY+IQGQPLEVTVIGCTKLKDTEWISRQDPYV LEYGSTKFRTTTCTDGGRNPTFQEK
Sbjct: 1   MSTYSIQGQPLEVTVIGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQEK 60

Query: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           FVFSLIEGLREI V VWNSNTVTYDDFIGNGKIQLAKVL+EGYDDS+WSLQTKTGR+
Sbjct: 61  FVFSLIEGLREIIVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRH 117

[Close]

BLAST of MS012234 vs. NCBI nr
Match: XP_022952957.1 (C2 domain-containing protein At1g63220-like [Cucurbita moschata])

HSP 1 Score: 235.3 bits (599), Expect = 2.6e-58
Identity = 108/117 (92.31%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60
           MSTY+IQGQPLE TV+GCTKLKDTEWISRQDPYV LEYGSTKFRTTTCTDGGRNPTFQ+K
Sbjct: 1   MSTYSIQGQPLEATVVGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQQK 60

Query: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           FVFSLIEGLREINV VWNSNTVTYDDFIG GKIQLAKVLSEGYDDS+WSLQTKTGR+
Sbjct: 61  FVFSLIEGLREINVTVWNSNTVTYDDFIGTGKIQLAKVLSEGYDDSSWSLQTKTGRH 117

[Close]

BLAST of MS012234 vs. ExPASy Swiss-Prot
Match: Q25AG5 (Elicitor-responsive protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=ERG3 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 30/97 (30.93%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 6   IQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEKFVFSL 65
           +QG  LEV ++G   L++T+++   DPY +L+  S + +++  +  G +P + E F+FS+
Sbjct: 2   VQG-TLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 61

Query: 66  IEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEG 103
                E+ + + +S++ T DDF+G   I L  + +EG
Sbjct: 62  THNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEG 97

[Close]

BLAST of MS012234 vs. ExPASy Swiss-Prot
Match: Q0JBH9 (Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG3 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 30/97 (30.93%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 6   IQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEKFVFSL 65
           +QG  LEV ++G   L++T+++   DPY +L+  S + +++  +  G +P + E F+FS+
Sbjct: 2   VQG-TLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 61

Query: 66  IEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEG 103
                E+ + + +S++ T DDF+G   I L  + +EG
Sbjct: 62  THNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEG 97

[Close]

BLAST of MS012234 vs. ExPASy Swiss-Prot
Match: Q9C8S6 (16 kDa phloem protein 2 OS=Arabidopsis thaliana OX=3702 GN=PP16-2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08
Identity = 27/92 (29.35%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 11  LEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLR 70
           LEV ++    L+D ++++  DPYV L   +   ++      G  P + E F+F++ EG  
Sbjct: 6   LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 65

Query: 71  EINVAVWNSNTVTYDDFIGNGKIQLAKVLSEG 103
           E+   +++ +  T DD +G   I L  V  EG
Sbjct: 66  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 97

[Close]

BLAST of MS012234 vs. ExPASy Swiss-Prot
Match: A2WWV5 (Elicitor-responsive protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=ERG1 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-08
Identity = 29/113 (25.66%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 11  LEVTVIGCTKLKDTEW---ISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEKFVFSL-- 70
           LEV ++    L   ++   I + DPYV+++Y S + +++   D G+NP++ E F F +  
Sbjct: 7   LEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQINS 66

Query: 71  --IEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGR 117
               G  ++ + + + +T + DDF+G   I +  ++S G +   W +     R
Sbjct: 67  TAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEMSESKHR 119

[Close]

BLAST of MS012234 vs. ExPASy Swiss-Prot
Match: Q0JHU5 (Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-08
Identity = 29/113 (25.66%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 11  LEVTVIGCTKLKDTEW---ISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEKFVFSL-- 70
           LEV ++    L   ++   I + DPYV+++Y S + +++   D G+NP++ E F F +  
Sbjct: 7   LEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQINS 66

Query: 71  --IEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGR 117
               G  ++ + + + +T + DDF+G   I +  ++S G +   W +     R
Sbjct: 67  TAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEMSESKHR 119

[Close]

BLAST of MS012234 vs. ExPASy TrEMBL
Match: A0A6J1D3B5 (protein SRC2 homolog OS=Momordica charantia OX=3673 GN=LOC111016635 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 5.5e-62
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60
           MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK
Sbjct: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60

Query: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGR+
Sbjct: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRH 117

[Close]

BLAST of MS012234 vs. ExPASy TrEMBL
Match: A0A0A0K6H5 (C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G073380 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 6.7e-60
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60
           MST+AIQGQPLEVTVIGCTKLKDTEWISRQDPYV LEYGSTKFRTTTCTDGGRNPTFQEK
Sbjct: 1   MSTFAIQGQPLEVTVIGCTKLKDTEWISRQDPYVFLEYGSTKFRTTTCTDGGRNPTFQEK 60

Query: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           FVFSLIEGLREINV VWNSNTVTYDDFIGNGKIQLAKVL+EGYDDS+WSLQTKTGR+
Sbjct: 61  FVFSLIEGLREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRH 117

[Close]

BLAST of MS012234 vs. ExPASy TrEMBL
Match: A0A1S4E0J9 (leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103495260 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.4e-59
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60
           MSTY+IQGQPLEVTVIGCTKLKDTEWISRQDPYV LEYGSTKFRTTTCTDGGRNPTFQEK
Sbjct: 1   MSTYSIQGQPLEVTVIGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQEK 60

Query: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           FVFSLIEGLREI V VWNSNTVTYDDFIGNGKIQLAKVL+EGYDDS+WSLQTKTGR+
Sbjct: 61  FVFSLIEGLREIIVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRH 117

[Close]

BLAST of MS012234 vs. ExPASy TrEMBL
Match: A0A5D3C5U4 (Leucine-rich repeat extensin-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00770 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.4e-59
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60
           MSTY+IQGQPLEVTVIGCTKLKDTEWISRQDPYV LEYGSTKFRTTTCTDGGRNPTFQEK
Sbjct: 1   MSTYSIQGQPLEVTVIGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQEK 60

Query: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           FVFSLIEGLREI V VWNSNTVTYDDFIGNGKIQLAKVL+EGYDDS+WSLQTKTGR+
Sbjct: 61  FVFSLIEGLREIIVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRH 117

[Close]

BLAST of MS012234 vs. ExPASy TrEMBL
Match: A0A6J1GLU4 (C2 domain-containing protein At1g63220-like OS=Cucurbita moschata OX=3662 GN=LOC111455479 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 108/117 (92.31%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MSTYAIQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEK 60
           MSTY+IQGQPLE TV+GCTKLKDTEWISRQDPYV LEYGSTKFRTTTCTDGGRNPTFQ+K
Sbjct: 1   MSTYSIQGQPLEATVVGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQQK 60

Query: 61  FVFSLIEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           FVFSLIEGLREINV VWNSNTVTYDDFIG GKIQLAKVLSEGYDDS+WSLQTKTGR+
Sbjct: 61  FVFSLIEGLREINVTVWNSNTVTYDDFIGTGKIQLAKVLSEGYDDSSWSLQTKTGRH 117

[Close]

BLAST of MS012234 vs. TAIR 10
Match: AT4G34150.1 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-46
Identity = 81/112 (72.32%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 6   IQGQPLEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEKFVFSL 65
           IQGQ LEVTV+GC KLKDTEW SRQDPYV+LEYG    RT TCTDGG+N  FQEKF+F+L
Sbjct: 7   IQGQILEVTVVGCQKLKDTEWFSRQDPYVVLEYGGRSHRTRTCTDGGKNAVFQEKFIFTL 66

Query: 66  IEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQTKTGRY 118
           IEGLR++ VAVWNSNT++ DDFIGN  IQL KVLS+ YDD  W+LQ+KTGR+
Sbjct: 67  IEGLRDLKVAVWNSNTLSTDDFIGNATIQLQKVLSQEYDDCTWTLQSKTGRF 118

[Close]

BLAST of MS012234 vs. TAIR 10
Match: AT1G63220.1 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 27/92 (29.35%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 11  LEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLR 70
           LEV ++    L+D ++++  DPYV L   +   ++      G  P + E F+F++ EG  
Sbjct: 6   LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 65

Query: 71  EINVAVWNSNTVTYDDFIGNGKIQLAKVLSEG 103
           E+   +++ +  T DD +G   I L  V  EG
Sbjct: 66  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 97

[Close]

BLAST of MS012234 vs. TAIR 10
Match: AT3G55470.2 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 58.2 bits (139), Expect = 5.3e-09
Identity = 31/105 (29.52%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 11  LEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEKF----VFSLI 70
           LEV++I    LK ++++ + DPYV ++Y     +++   DGGRNPT+ +K      F   
Sbjct: 6   LEVSLISGKGLKRSDFLGKIDPYVEIQYKGQTRKSSVAKDGGRNPTWNDKLKWRAEFPGS 65

Query: 71  EGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQ 112
               ++ V V + +T + DDFIG   + + ++L  G +     L+
Sbjct: 66  GADYKLIVKVMDHDTFSSDDFIGEATVHVKELLEMGVEKGTAELR 110

[Close]

BLAST of MS012234 vs. TAIR 10
Match: AT3G55470.1 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 57.4 bits (137), Expect = 9.0e-09
Identity = 33/106 (31.13%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 11  LEVTVIGCTKLKDTEWISRQDPYVLLEY-GSTKFRTTTCTDGGRNPTFQEKF----VFSL 70
           LEV++I    LK ++++ + DPYV ++Y G T+  +    DGGRNPT+ +K      F  
Sbjct: 6   LEVSLISGKGLKRSDFLGKIDPYVEIQYKGQTRKSSVAKEDGGRNPTWNDKLKWRAEFPG 65

Query: 71  IEGLREINVAVWNSNTVTYDDFIGNGKIQLAKVLSEGYDDSAWSLQ 112
                ++ V V + +T + DDFIG   + + ++L  G +     L+
Sbjct: 66  SGADYKLIVKVMDHDTFSSDDFIGEATVHVKELLEMGVEKGTAELR 111

[Close]

BLAST of MS012234 vs. TAIR 10
Match: AT3G07940.1 (Calcium-dependent ARF-type GTPase activating protein family )

HSP 1 Score: 48.5 bits (114), Expect = 4.2e-06
Identity = 27/99 (27.27%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 11  LEVTVIGCTKLKDTEWISRQDPYVLLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLR 70
           ++V V+  T L   + +   DPYV+L  G    +T    +   NP + E  + S+ E + 
Sbjct: 231 IKVNVVKGTNLAVRD-VMTSDPYVILALGQQSVKTRVIKN-NLNPVWNETLMLSIPEPMP 290

Query: 71  EINVAVWNSNTVTYDDFIGNGKIQLAKVLS--EGYDDSA 108
            + V V++ +T + DDF+G  +I +  ++S  + Y+ S+
Sbjct: 291 PLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSS 327

The following BLAST results are available for this feature:

BLAST of MS012234 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147782.1	1.1e-61	99.15	protein SRC2 homolog [Momordica charantia] >XP_022147784.1 protein SRC2 homolog ...	[more]
XP_011658892.1	1.4e-59	94.87	leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >XP_031744405.1 le...	[more]
XP_038888782.1	1.8e-59	94.87	protein SRC2 homolog [Benincasa hispida] >XP_038888783.1 protein SRC2 homolog [B...	[more]
XP_008454977.1	1.5e-58	94.02	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo] >XP_008454...	[more]
XP_022952957.1	2.6e-58	92.31	C2 domain-containing protein At1g63220-like [Cucurbita moschata]	[more]

BLAST of MS012234 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q25AG5	1.2e-10	30.93	Elicitor-responsive protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=ERG3 PE=...	[more]
Q0JBH9	1.2e-10	30.93	Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG3 P...	[more]
Q9C8S6	1.5e-08	29.35	16 kDa phloem protein 2 OS=Arabidopsis thaliana OX=3702 GN=PP16-2 PE=1 SV=1	[more]
A2WWV5	7.5e-08	25.66	Elicitor-responsive protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=ERG1 PE=...	[more]
Q0JHU5	7.5e-08	25.66	Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG1 P...	[more]

BLAST of MS012234 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3B5	5.5e-62	99.15	protein SRC2 homolog OS=Momordica charantia OX=3673 GN=LOC111016635 PE=4 SV=1	[more]
A0A0A0K6H5	6.7e-60	94.87	C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G073380 PE=4 SV=...	[more]
A0A1S4E0J9	7.4e-59	94.02	leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A5D3C5U4	7.4e-59	94.02	Leucine-rich repeat extensin-like protein 3 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1GLU4	1.3e-58	92.31	C2 domain-containing protein At1g63220-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of MS012234 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34150.1	2.4e-46	72.32	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT1G63220.1	1.1e-09	29.35	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT3G55470.2	5.3e-09	29.52	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT3G55470.1	9.0e-09	31.13	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT3G07940.1	4.2e-06	27.27	Calcium-dependent ARF-type GTPase activating protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000008	C2 domain	SMART	SM00239	C2_3c	coord: 10..107 e-value: 1.9E-11 score: 54.1
IPR000008	C2 domain	PFAM	PF00168	C2	coord: 11..102 e-value: 1.5E-15 score: 57.3
IPR000008	C2 domain	PROSITE	PS50004	C2	coord: 1..109 score: 15.151424
IPR035892	C2 domain superfamily	GENE3D	2.60.40.150	C2 domain	coord: 9..117 e-value: 4.0E-22 score: 80.9
IPR035892	C2 domain superfamily	SUPERFAMILY	49562	C2 domain (Calcium/lipid-binding domain, CaLB)	coord: 6..115
None	No IPR available	PANTHER	PTHR47052	CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790)	coord: 3..117
None	No IPR available	CDD	cd00030	C2	coord: 11..108 e-value: 5.86852E-20 score: 75.9515

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012234.1	MS012234.1	mRNA